Peter Clote - Publications, H-index & Citations

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Peter Clote

University of Washington

30H-index

177Paper Count

3.3KCitation Count

Published Papers 19

Publication Date

Designing synthetic RNAs to determine the relevance of structural motifs in picornavirus IRES elements

SCIENTIFIC REPORTS

IF3.9

2016-04-07

OAAI

Fernandez-Chamorro, Javier; Lozano, Gloria; Garcia-Martin, Juan Antonio; Ramajo, Jorge; Dotu, Ivan; Clote, Peter; Martinez-Salas, Encarnacion

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Expected Degree for RNA Secondary Structure Networks

JOURNAL OF COMPUTATIONAL CHEMISTRY

IF4.8

2014-11-07

OAAI

Clote, Peter

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Using RNA inverse folding to identify IRES-like structural subdomains

RNA BIOLOGY

IF3.4

2014-10-27

OAAI

Dotu, Ivan; Lozano, Gloria; Clote, Peter; Martinez-Salas, Encarnacion

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RNAiFold: a web server for RNA inverse folding and molecular design

NUCLEIC ACIDS RESEARCH

IF13.1

2013-05-21

OAAI

Garcia-Martin, Juan Antonio; Clote, Peter; Dotu, Ivan

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On Lattice Protein Structure Prediction Revisited

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2011-11-01

PREAI

Dotu, Ivan; Cebrian, Manuel; Van Hentenryck, Pascal; Clote, Peter

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Fragmentation-free LC-MS can identify hundreds of proteins

PROTEOMICS

IF3.9

2010-12-06

PREAI

Bochet, Pascal; Ruegheimer, Frank; Guina, Tina; Brooks, Peter; Goodlett, David; Clote, Peter; Schwikowski, Benno

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Computing folding pathways between RNA secondary structures

NUCLEIC ACIDS RESEARCH

IF13.1

2009-12-30

OAAI

Dotu, Ivan; Lorenz, William A.; Van Hentenryck, Pascal; Clote, Peter

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RNAmutants: a web server to explore the mutational landscape of RNA secondary structures

NUCLEIC ACIDS RESEARCH

IF13.1

2009-06-16

OAAI

Waldispuhl, Jerome; Devadas, Srinivas; Berger, Bonnie; Clote, Peter

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LocalMove: computing on-lattice fits for biopolymers

NUCLEIC ACIDS RESEARCH

IF13.1

2008-05-19

OAAI

Ponty, Y.; Istrate, R.; Porcelli, E.; Clote, P.

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Modeling ensembles of transmembrane β-barrel proteins

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2007-11-14

PREAI

Waldispuehl, Jerome; O'Donnell, Charles W.; Devadas, Srinivas; Clote, Peter; Berger, Bonnie

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RNAbor: a web server for RNA structural neighbors

NUCLEIC ACIDS RESEARCH

IF13.1

2007-05-08

OAAI

Freyhult, Eva; Moulton, Vincent; Clote, Peter

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DIAL:: a web server for the pairwise alignment of two RNA three-dimensional structures using nucleotide, dihedral angle and base-pairing similarities

NUCLEIC ACIDS RESEARCH

IF13.1

2007-05-08

OAAI

Ferre, F.; Ponty, Y.; Lorenz, W. A.; Clote, Peter

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Predicting transmembrane β-barrels and interstrand residue interactions from sequence

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2006-07-20

OAAI

Waldispuhl, J.; Berger, Bonnie; Clote, Peter; Steyaert, Jean-Marc

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transFold:: a web server for predicting the structure and residue contacts of transmembrane beta-barrels

NUCLEIC ACIDS RESEARCH

IF13.1

2006-07-01

OAAI

Waldispuhl, J.; Berger, Bonnie; Clote, Peter; Steyaert, Jean-Marc

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BTW:: a web server for Boltzmann time warping of gene expression time series

NUCLEIC ACIDS RESEARCH

IF13.1

2006-07-01

OAAI

Ferre, F.; Clote, P.

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DiANNA 1.1:: an extension of the DiANNA web server for ternary cysteine classification

NUCLEIC ACIDS RESEARCH

IF13.1

2006-07-01

181

OAAI

Ferre, F.; Clote, P.

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DiANNA:: a web server for disulfide connectivity prediction

NUCLEIC ACIDS RESEARCH

IF13.1

2005-07-01

294

OAAI

Ferrè, F; Clote, P

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RNALOSS: a web server for RNA locally optimal secondary structures

NUCLEIC ACIDS RESEARCH

IF13.1

2005-07-01

OAAI

Clote, P

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Structural RNA has lower folding energy than random RNA of the same dinucleotide frequency

RNA

IF5

2005-04-19

177

OAAI

Clote, P; Ferré, F; Kranakis, E; Krizanc, D

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Research Directions