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Ryan N. Gutenkunst

University of Arizona

40H-index
132Paper Count
1.1WCitation Count
Published Papers 40
Publication Date
GHIST 2024: The First Genomic History Inference Strategies Tournament
err2025-11-01
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PREAI
errStruck, Travis J.; Vaughn, Andrew H.; Daigle, Austin; Ray, Dylan D.; Noskova, Ekaterina; Sequeira, Jaison J.; Antonets, Svetlana; Alekseevskaya, Elizaveta; Grigoreva, Elizaveta; Raines, Evgenii; Mcmaster, Eilish S.; Kovacs, Toby G. L.; Ragsdale, Aaron P.; Moreno-Estrada, Andres; Lotterhos, Katie E.; Siepel, Adam; Gutenkunst, Ryan N.
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Accessible, Realistic Genome Simulation with Selection Using stdpopsim
err2025-11-01
err0
errOAAI
errGower, Graham; Pope, Nathaniel S.; Rodrigues, Murillo F.; Tittes, Silas; Tran, Linh N.; Alam, Ornob; Cavassim, Maria Izabel A.; Fields, Peter D.; Haller, Benjamin C.; Huang, Xin; Jeffrey, Ben; Korfmann, Kevin; Kyriazis, Christopher C.; Min, Jiseon; Rebollo, Ines; Rehmann, Clara T.; Small, Scott T.; Smith, Chris C. R.; Tsambos, Georgia; Wong, Yan; Zhang, Yu; Huber, Christian D.; Gorjanc, Gregor; Ragsdale, Aaron P.; Gronau, Ilan; Gutenkunst, Ryan N.; Kelleher, Jerome; Lohmueller, Kirk E.; Schrider, Daniel R.; Ralph, Peter L.; Kern, Andrew D.
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Immunoediting restricts clonal neoantigens in primary human tumors
err2025-11-01
err0
PREAI
errBorden, Elizabeth S.; Castellano, David; Hughes, Alysia; Ma, Tao; Li, Xing; Mangold, Aaron R.; Gutenkunst, Ryan N.; LaFleur, Bonnie J.; Buetow, Kenneth H.; Wilson, Melissa A.; Hastings, Karen Taraszka
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Nonhypermutator Cancers Access Driver Mutations Through Reversals in Germline Mutational Bias
err2025-05-26
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errOAAI
errTuffaha, Marwa Z.; Castellano, David; Colome, Claudia Serrano; Gutenkunst, Ryan N.; Wahl, Lindi M.
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Modeling Biases from Low-Pass Genome Sequencing to Enable Accurate Population Genetic Inferences
err2025-01-23
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errOAAI
errFonseca, Emanuel M.; Tran, Linh N.; Mendoza, Hannah; Gutenkunst, Ryan N.
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Computationally Efficient Demographic History Inference from Allele Frequencies with Supervised Machine Learning
err2024-04-18
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errOAAI
errTran, Linh N.; Sun, Connie K.; Struck, Travis J.; Sajan, Mathews; Gutenkunst, Ryan N.
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Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations
err2023-06-21
err17
errOAAI
errLauterbur, M. Elise; Cavassim, Maria Izabel A.; Gladstein, Ariella L.; Gower, Graham; Pope, Nathaniel S.; Tsambos, Georgia; Adrion, Jeffrey; Belsare, Saurabh; Biddanda, Arjun; Caudill, Victoria; Cury, Jean; Echevarria, Ignacio; Haller, Benjamin C.; Hasan, Ahmed R.; Huang, Xin; Iasi, Leonardo Nicola Martin; Noskova, Ekaterina; Obsteter, Jana; Pavinato, Vitor Antonio Correa; Pearson, Alice; Peede, David; Perez, Manolo F.; Rodrigues, Murillo F.; Smith, Chris C. R.; Spence, Jeffrey P.; Teterina, Anastasia; Tittes, Silas; Unneberg, Per; Vazquez, Juan Manuel; Waples, Ryan K.; Wohns, Anthony Wilder; Wong, Yan; Baumdicker, Franz; Cartwright, Reed A.; Gorjanc, Gregor; Gutenkunst, Ryan N.; Kelleher, Jerome; Kern, Andrew D.; Ragsdale, Aaron P.; Ralph, Peter L.; Schrider, Daniel R.; Gronau, Ilan
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Demographic history inference and the polyploid continuum
err2023-06-05
err12
errOAAI
errBlischak, Paul D.; Sajan, Mathews; Barker, Michael S.; Gutenkunst, Ryan N.
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Demes: a standard format for demographic models
err2022-09-29
err14
errOAAI
errGower, Graham; Ragsdale, Aaron P.; Bisschop, Gertjan; Gutenkunst, Ryan N.; Hartfield, Matthew; Noskova, Ekaterina; Schiffels, Stephan; Struck, Travis J.; Kelleher, Jerome; Thornton, Kevin R.
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Genomic landscape of lymphatic malformations: a case series and response to the PI3Kα inhibitor alpelisib in an N-of-1 clinical trial
err2022-07-05
err8
errOAAI
errShaheen, Montaser F.; Tse, Julie Y.; Sokol, Ethan S.; Masterson, Margaret; Bansal, Pranshu; Rabinowitz, Ian; Tarleton, Christy A.; Dobroff, Andrey S.; Smith, Tracey L.; Bocklage, Therese J.; Mannakee, Brian K.; Gutenkunst, Ryan N.; Bischoff, Joyce; Ness, Scott A.; Riedlinger, Gregory M.; Groisberg, Roman; Pasqualini, Renata; Ganesan, Shridar; Arap, Wadih
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On the prospect of achieving accurate joint estimation of selection with population history
err2022-06-08
err29
errOAAI
errJohri, Parul; Eyre-Walker, Adam; Gutenkunst, Ryan N.; Lohmueller, Kirk E.; Jensen, Jeffrey D.
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Inferring Genome-Wide Correlations of Mutation Fitness Effects between Populations
err2021-05-27
err19
errOAAI
errHuang, Xin; Fortier, Alyssa Lyn; Coffman, Alec J.; Struck, Travis J.; Irby, Megan N.; James, Jennifer E.; Leon-Burguete, Jose E.; Ragsdale, Aaron P.; Gutenkunst, Ryan N.
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A community-maintained standard library of population genetic models
err2020-06-23
err82
errOAAI
errAdrion, Jeffrey R.; Cole, Christopher B.; Dukler, Noah; Galloway, Jared G.; Gladstein, Ariella L.; Gower, Graham; Kyriazis, Christopher C.; Ragsdale, Aaron P.; Tsambos, Georgia; Baumdicker, Franz; Carlson, Jedidiah; Cartwright, Reed A.; Durvasula, Arun; Gronau, Ilan; Kim, Bernard Y.; McKenzie, Patrick; Messer, Philipp W.; Noskova, Ekaterina; Ortega-Del Vecchyo, Diego; Racimo, Fernando; Struck, Travis J.; Gravel, Simon; Gutenkunst, Ryan N.; Lohmueller, Kirk E.; Ralph, Peter L.; Schrider, Daniel R.; Siepel, Adam; Kelleher, Jerome; Kern, Andrew D.
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Inferring the Demographic History of Inbred Species from Genome-Wide SNP Frequency Data
err2020-02-18
err24
errOAAI
errBlischak, Paul D.; Barker, Michael S.; Gutenkunst, Ryan N.
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The impact of genome-wide association studies on biomedical research publications
err2018-08-13
err11
errOAAI
errStruck, Travis J.; Mannakee, Brian K.; Gutenkunst, Ryan N.
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Exome Sequencing Provides Evidence of Polygenic Adaptation to a Fat-Rich Animal Diet in Indigenous Siberian Populations
err2017-09-12
err32
errOAAI
errHsieh, PingHsun; Hallmark, Brian; Watkins, Joseph; Karafet, Tatiana M.; Osipova, Ludmila P.; Gutenkunst, Ryan N.; Hammer, Michael F.
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