Not logged in Automating Data Extraction From Scientific Literature and General PDF Files Using Large Language Models and KNIME: An Application in Toxicology Moreira-Filho, Jose Teofilo; Ranganath, Dhruv; Tieghi, Ricardo S.; Patton, Robert; Sutherland, Vicki; Schmitt, Charles; Rooney, Andrew A.; Fostel, Jennifer; Walker, Vickie R.; Saddler, Trey; Reif, David; Mansouri, Kamel; Kleinstreuer, Nicole Share Save
ToxicR: A computational platform in R for computational toxicology and dose-response analyses Wheeler, Matthew W.; Lim, Sooyeong; House, John S.; Shockley, Keith R.; Bailer, A. John; Fostel, Jennifer; Yang, Longlong; Talley, Dawan; Raghuraman, Ashwin; Gift, Jeffery S.; Davis, J. Allen; Auerbach, Scott S.; Motsinger-Reif, Alison A. Share Save
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Mining the Archives: A Cross-Platform Analysis of Gene Expression Profiles in Archival Formalin-Fixed Paraffin-Embedded Tissues Webster, A. Francina; Zumbo, Paul; Fostel, Jennifer; Gandara, Jorge; Hester, Susan D.; Recio, Leslie; Williams, Andrew; Wood, Charles E.; Yauk, Carole L.; Mason, Christopher E. Share Save
Profiling of the Tox21 10K compound library for agonists and antagonists of the estrogen receptor alpha signaling pathway Huang, Ruili; Sakamuru, Srilatha; Martin, Matt T.; Reif, David M.; Judson, Richard S.; Houck, Keith A.; Casey, Warren; Hsieh, Jui-Hua; Shockley, Keith R.; Ceger, Patricia; Fostel, Jennifer; Witt, Kristine L.; Tong, Weida; Rotroff, Daniel M.; Zhao, Tongan; Shinn, Paul; Simeonov, Anton; Dix, David J.; Austin, Christopher P.; Kavlock, Robert J.; Tice, Raymond R.; Xia, Menghang Share Save
Targeted Deletion of Nrf2 Impairs Lung Development and Oxidant Injury in Neonatal Mice Cho, Hye-Youn; van Houten, Bennett; Wang, Xuting; Miller-DeGraff, Laura; Fostel, Jennifer; Gladwell, Wesley; Perrow, Ligon; Panduri, Vijayalakshmi; Kobzik, Lester; Yamamoto, Masayuki; Bell, Douglas A.; Kleeberger, Steven R. Share Save
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Maximizing biomarker discovery by minimizing gene signatures Chang, Chang; Wang, Junwei; Zhao, Chen; Fostel, Jennifer; Tong, Weida; Bushel, Pierre R.; Deng, Youping; Pusztai, Lajos; Symmans, W. Fraser; Shi, Tieliu Share Save
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The MicroArray Quality Control (MAQC)-IIII study of common practices for the development and validation of microarray-based predictive models Shi, Leming; Campbell, Gregory; Jones, Wendell D.; Campagne, Fabien; Wen, Zhining; Walker, Stephen J.; Su, Zhenqiang; Chu, Tzu-Ming; Goodsaid, Federico M.; Pusztai, Lajos; Shaughnessy, John D., Jr.; Oberthuer, Andre; Thomas, Russell S.; Paules, Richard S.; Fielden, Mark; Barlogie, Bart; Chen, Weijie; Du, Pan; Fischer, Matthias; Furlanello, Cesare; Gallas, Brandon D.; Ge, Xijin; Megherbi, Dalila B.; Symmans, W. Fraser; Wang, May D.; Zhang, John; Bitter, Hans; Brors, Benedikt; Bushel, Pierre R.; Bylesjo, Max; Chen, Minjun; Cheng, Jie; Cheng, Jing; Chou, Jeff; Davison, Timothy S.; Delorenzi, Mauro; Deng, Youping; Devanarayan, Viswanath; Dix, David J.; Dopazo, Joaquin; Dorff, Kevin C.; Elloumi, Fathi; Fan, Jianqing; Fan, Shicai; Fan, Xiaohui; Fang, Hong; Gonzaludo, Nina; Hess, Kenneth R.; Hong, Huixiao; Huan, Jun; Irizarry, Rafael A.; Judson, Richard; Juraeva, Dilafruz; Lababidi, Samir; Lambert, Christophe G.; Li, Li; Li, Yanen; Li, Zhen; Lin, Simon M.; Liu, Guozhen; Lobenhofer, Edward K.; Luo, Jun; Luo, Wen; McCall, Matthew N.; Nikolsky, Yuri; Pennello, Gene A.; Perkins, Roger G.; Philip, Reena; Popovici, Vlad; Price, Nathan D.; Qian, Feng; Scherer, Andreas; Shi, Tieliu; Shi, Weiwei; Sung, Jaeyun; Thierry-Mieg, Danielle; Thierry-Mieg, Jean; Thodima, Venkata; Trygg, Johan; Vishnuvajjala, Lakshmi; Wang, Sue Jane; Wu, Jianping; Wu, Yichao; Xie, Qian; Yousef, Waleed A.; Zhang, Liang; Zhang, Xuegong; Zhong, Sheng; Zhou, Yiming; Zhu, Sheng; Arasappan, Dhivya; Bao, Wenjun; Lucas, Anne Bergstrom; Berthold, Frank; Brennan, Richard J.; Buness, Andreas; Catalano, Jennifer G.; Chang, Chang; Chen, Rong; Cheng, Yiyu; Cui, Jian; Czika, Wendy; Demichelis, Francesca; Deng, Xutao; Dosymbekov, Damir; Eils, Roland; Feng, Yang; Fostel, Jennifer; Fulmer-Smentek, Stephanie; Fuscoe, James C.; Gatto, Laurent; Ge, Weigong; Goldstein, Darlene R.; Guo, Li; Halbert, Donald N.; Han, Jing; Harris, Stephen C.; Hatzis, Christos; Herman, Damir; Huang, Jianping; Jensen, Roderick V.; Jiang, Rui; Johnson, Charles D.; Jurman, Giuseppe; Kahlert, Yvonne; Khuder, Sadik A.; Kohl, Matthias; Li, Jianying; Li, Li; Li, Menglong; Li, Quan-Zhen; Li, Shao; Li, Zhiguang; Liu, Jie; Liu, Ying; Liu, Zhichao; Meng, Lu; Madera, Manuel; Martinez-Murillo, Francisco; Medina, Ignacio; Meehan, Joseph; Miclaus, Kelci; Moffitt, Richard A.; Montaner, David; Mukherjee, Piali; Mulligan, George J.; Neville, Padraic; Nikolskaya, Tatiana; Ning, Baitang; Page, Grier P.; Parker, Joel; Parry, R. Mitchell; Peng, Xuejun; Peterson, Ron L.; Phan, John H.; Quanz, Brian; Ren, Yi; Riccadonna, Samantha; Roter, Alan H.; Samuelson, Frank W.; Schumacher, Martin M.; Shambaugh, Joseph D.; Shi, Qiang; Shippy, Richard; Si, Shengzhu; Smalter, Aaron; Sotiriou, Christos; Soukup, Mat; Staedtler, Frank; Steiner, Guido; Stokes, Todd H.; Sun, Qinglan; Tan, Pei-Yi; Tang, Rong; Tezak, Zivana; Thorn, Brett; Tsyganova, Marina; Turpaz, Yaron; Vega, Silvia C.; Visintainer, Roberto; von Frese, Juergen; Wang, Charles; Wang, Eric; Wang, Junwei; Wang, Wei; Westermann, Frank; Willey, James C.; Woods, Matthew; Wu, Shujian; Xiao, Nianqing; Xu, Joshua; Xu, Lei; Yang, Lun; Zeng, Xiao; Zhang, Jialu; Zhang, Li; Zhang, Min; Zhao, Chen; Puri, Raj K.; Scherf, Uwe; Tong, Weida; Wolfinger, Russell D. Share Save
Current and Future Applications of Toxicogenomics: Results Summary of a Survey from the HESI Genomics State of Science Subcommittee Pettit, Syril; des Etages, Shelley Ann; Mylecraine, Louis; Snyder, Ronald; Fostel, Jennifer; Dunn, Robert T., II; Haymes, Kenneth; Duval, Manuel; Stevens, James; Afshari, Cynthia; Vickers, Alison Share Save
Characterization and Interlaboratory Comparison of a Gene Expression Signature for Differentiating Genotoxic Mechanisms Ellinger-Ziegelbauer, Heidrun; Fostel, Jennifer M.; Aruga, Chinami; Bauer, Daniel; Boitier, Eric; Deng, Shibing; Dickinson, Donna; Le Fevre, Anne-Celine; Fornace, Albert J., Jr.; Grenet, Olivier; Gu, Yizhong; Hoflack, Jean-Christophe; Shiiyama, Masako; Smith, Roger; Snyder, Ronald D.; Spire, Catherine; Tanaka, Gotaro; Aubrechtk, Jiri Share Save
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Promoting coherent minimum reporting guidelines for biological and biomedical investigations:: the MIBBI project Taylor, Chris F.; Field, Dawn; Sansone, Susanna-Assunta; Aerts, Jan; Apweiler, Rolf; Ashburner, Michael; Ball, Catherine A.; Binz, Pierre-Alain; Bogue, Molly; Booth, Tim; Brazma, Alvis; Brinkman, Ryan R.; Clark, Adam Michael; Deutsch, Eric W.; Fiehn, Oliver; Fostel, Jennifer; Ghazal, Peter; Gibson, Frank; Gray, Tanya; Grimes, Graeme; Hancock, John M.; Hardy, Nigel W.; Hermjakob, Henning; Julian, Randall K., Jr.; Kane, Matthew; Kettner, Carsten; Kinsinger, Christopher; Kolker, Eugene; Kuiper, Martin; Le Novere, Nicolas; Leebens-Mack, Jim; Lewis, Suzanna E.; Lord, Phillip; Mallon, Ann-Marie; Marthandan, Nishanth; Masuya, Hiroshi; McNally, Ruth; Mehrle, Alexander; Morrison, Norman; Orchard, Sandra; Quackenbush, John; Reecy, James M.; Robertson, Donald G.; Rocca-Serra, Philippe; Rodriguez, Henry; Rosenfelder, Heiko; Santoyo-Lopez, Javier; Scheuermann, Richard H.; Schober, Daniel; Smith, Barry; Snape, Jason; Stoeckert, Christian J., Jr.; Tipton, Keith; Sterk, Peter; Untergasser, Andreas; Vandesompele, Jo; Wiemann, Stefan Share Save
Gene expression response in target organ and whole blood varies as a function of target organ injury phenotype Lobenhofer, Edward K.; Auman, J. Todd; Blackshear, Pamela E.; Boorman, Gary A.; Bushel, Pierre R.; Cunningham, Michael L.; Fostel, Jennifer M.; Gerrish, Kevin; Heinloth, Alexandra N.; Irwin, Richard D.; Malarkey, David E.; Merrick, B. Alex; Sieber, Stella O.; Tucker, Charles J.; Ward, Sandra M.; Wilson, Ralph E.; Hurban, Patrick; Tennant, Raymond W.; Paules, Richard S. Share Save
Sources of variation in baseline gene expression levels from toxicogenomics study control animals across multiple laboratories Boedigheimer, Michael J.; Wolfinger, Russell D.; Bass, Michael B.; Bushel, Pierre R.; Chou, Jeff W.; Cooper, Matthew; Corton, J. Christopher; Fostel, Jennifer; Hester, Susan; Lee, Janice S.; Liu, Fenglong; Liu, Jie; Qian, Hui-Rong; Quackenbush, John; Pettit, Syril; Thompson, Karol L. Share Save
Single-step doxorubicin-selected cancer cells overexpress the ABCG2 drug transporter through epigenetic changes Calcagno, A. M.; Fostel, J. M.; To, K. K. W.; Salcido, C. D.; Martin, S. E.; Chewning, K. J.; Wu, C-P; Varticovski, L.; Bates, S. E.; Caplen, N. J.; Ambudkar, S. V. Share Save
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