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Toward standardization and a concerted vision for platelet proteomics research: communication from the SSC of the ISTH Martinez-Botia, Patricia; Yunga, Samuel Tassi; Szklanna, Paulina; Babur, Ozgun; Emili, Andrew; Wilmarth, Phillip A.; Heemskerk, Johan W. M.; Maguire, Patricia B.; Iding, Aaron F. J.; Aslan, Joseph E.; Gutierrez, Laura Share Save
Aging-related alterations in mechanistic target of rapamycin signaling promote platelet hyperreactivity and thrombosis Portier, Irina; Manne, Bhanu Kanth; Kosaka, Yasuhiro; Tolley, Neal D.; Denorme, Frederik; Babur, Ozgun; Reddy, Ashok P.; Wilmarth, Phillip A.; Aslan, Joseph E.; Weyrich, Andrew S.; Rondina, Matthew T.; Campbell, Robert A. Share Save
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Exploring Protein Kinase C Theta (PKC.) Signaling In The Generation Of Procoagulant Platelet: Insights From Phosphoproteomics And Systems Analysis Zheng, Yiheng; Reitsma, Stephanie; Jordan, Sandler; Babur, Ozgun; Melrose, Alexander; Pang, Jiaqing; Hodapp, Stefanie; Newton, Alexandra; Wilmarth, Phillip; Reddy, Ashok; McCarty, Owen J.; Aslan, Joseph E. Share Save
A framework for considering prior information in network-based approaches to omics data analysis Somers, Julia; Fenner, Madeleine; Kong, Garth; Thirumalaisamy, Dharani; Yashar, William M.; Thapa, Kisan; Kinali, Meric; Nikolova, Olga; Babur, Ozgun; Demir, Emek Share Save
Protein Kinase Signaling Networks Driven by Oncogenic Gq/11 in Uveal Melanoma Identified by Phosphoproteomic and Bioinformatic Analyses Onken, Michael D.; Erdmann-Gilmore, Petra; Zhang, Qiang; Thapa, Kisan; King, Emily; Kaltenbronn, Kevin M.; Noda, Sarah E.; Makepeace, Carol M.; Goldfarb, Dennis; Babur, Ozgun; Townsend, R. Reid; Blumer, Kendall J. Share Save
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Protein Kinase C Theta (PKC.) Signaling Associated With The Generation Of Procoagulant Platelets Revealed By Phosphoproteomics And Systems Analysis Zheng, Yiheng; Reitsma, Stephanie; Babur, Ozgun; Melrose, Alexander; Pang, Jiaqing; Hodapp, Stefanie; Newton, Alexandra; Wilmarth, Phillip; Reddy, Ashok; McCarty, Owen J.; Aslan, Joseph E. Share Save
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BET inhibition induces vulnerability to MCL1 targeting through upregulation of fatty acid synthesis pathway in breast cancer Yan, Gonghong; Luna, Augustin; Wang, Heping; Bozorgui, Behnaz; Li, Xubin; Sanchez, Maga; Dereli, Zeynep; Kahraman, Nermin; Kara, Goknur; Chen, Xiaohua; Zheng, Caishang; McGrail, Daniel; Sahni, Nidhi; Lu, Yiling; Babur, Ozgun; Cokol, Murat; Lim, Bora; Ozpolat, Bulent; Sander, Chris; Mills, Gordon B.; Korkut, Anil Share Save
PPM1D mutations are oncogenic drivers of de novo diffuse midline glioma formation Khadka, Prasidda; Reitman, Zachary J.; Lu, Sophie; Buchan, Graham; Gionet, Gabrielle; Dubois, Frank; Carvalho, Diana M.; Shih, Juliann; Zhang, Shu; Greenwald, Noah F.; Zack, Travis; Shapira, Ofer; Pelton, Kristine; Hartley, Rachel; Bear, Heather; Georgis, Yohanna; Jarmale, Spandana; Melanson, Randy; Bonanno, Kevin; Schoolcraft, Kathleen; Miller, Peter G.; Condurat, Alexandra L.; Gonzalez, Elizabeth M.; Qian, Kenin; Morin, Eric; Langhnoja, Jaldeep; Lupien, Leslie E.; Rendo, Veronica; Digiacomo, Jeromy; Wang, Dayle; Zhou, Kevin; Kumbhani, Rushil; Garcia, Maria E. Guerra; Sinai, Claire E.; Becker, Sarah; Schneider, Rachel; Vogelzang, Jayne; Krug, Karsten; Goodale, Amy; Abid, Tanaz; Kalani, Zohra; Piccioni, Federica; Beroukhim, Rameen; Persky, Nicole S.; Root, David E.; Carcaboso, Angel M.; Ebert, Benjamin L.; Fuller, Christine; Babur, Ozgun; Kieran, Mark W.; Jones, Chris; Keshishian, Hasmik; Ligon, Keith L.; Carr, Steven A.; Phoenix, Timothy N.; Bandopadhayay, Pratiti Share Save
COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021) Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Monraz Gomez, Luis Cristobal; Somers, Julia; Hoch, Matti; Kumar Gupta, Shailendra; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; Ponce de Leon, Miguel; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Drager, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Bornigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, D. A. B.; Slenter, Denise; Martens, Marvin; Pham, Nhung; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Senff-Ribeiro, Andrea; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Willighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard Share Save
Science Forum: Author-sourced capture of pathway knowledge in computable form using Biofactoid Wong, Jeffrey, V; Franz, Max; Siper, Metin Can; Fong, Dylan; Durupinar, Funda; Dallago, Christian; Luna, Augustin; Giorgi, John; Rodchenkov, Igor; Babur, Ozgun; Bachman, John A.; Gyori, Benjamin M.; Demir, Emek; Bader, Gary D.; Sander, Chris Share Save
COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms Ostaszewski, Marek; Niarakis, Anna; Mazein, Alexander; Kuperstein, Inna; Phair, Robert; Orta-Resendiz, Aurelio; Singh, Vidisha; Aghamiri, Sara Sadat; Acencio, Marcio Luis; Glaab, Enrico; Ruepp, Andreas; Fobo, Gisela; Montrone, Corinna; Brauner, Barbara; Frishman, Goar; Gomez, Luis Cristobal Monraz; Somers, Julia; Hoch, Matti; Gupta, Shailendra Kumar; Scheel, Julia; Borlinghaus, Hanna; Czauderna, Tobias; Schreiber, Falk; Montagud, Arnau; de Leon, Miguel Ponce; Funahashi, Akira; Hiki, Yusuke; Hiroi, Noriko; Yamada, Takahiro G.; Draeger, Andreas; Renz, Alina; Naveez, Muhammad; Bocskei, Zsolt; Messina, Francesco; Boernigen, Daniela; Fergusson, Liam; Conti, Marta; Rameil, Marius; Nakonecnij, Vanessa; Vanhoefer, Jakob; Schmiester, Leonard; Wang, Muying; Ackerman, Emily E.; Shoemaker, Jason E.; Zucker, Jeremy; Oxford, Kristie; Teuton, Jeremy; Kocakaya, Ebru; Summak, Gokce Yagmur; Hanspers, Kristina; Kutmon, Martina; Coort, Susan; Eijssen, Lars; Ehrhart, Friederike; Rex, Devasahayam Arokia Balaya; Slenter, Denise; Martens, Marvin; Nhung Pham; Haw, Robin; Jassal, Bijay; Matthews, Lisa; Orlic-Milacic, Marija; Ribeiro, Andrea Senff; Rothfels, Karen; Shamovsky, Veronica; Stephan, Ralf; Sevilla, Cristoffer; Varusai, Thawfeek; Ravel, Jean-Marie; Fraser, Rupsha; Ortseifen, Vera; Marchesi, Silvia; Gawron, Piotr; Smula, Ewa; Heirendt, Laurent; Satagopam, Venkata; Wu, Guanming; Riutta, Anders; Golebiewski, Martin; Owen, Stuart; Goble, Carole; Hu, Xiaoming; Overall, Rupert W.; Maier, Dieter; Bauch, Angela; Gyori, Benjamin M.; Bachman, John A.; Vega, Carlos; Groues, Valentin; Vazquez, Miguel; Porras, Pablo; Licata, Luana; Iannuccelli, Marta; Sacco, Francesca; Nesterova, Anastasia; Yuryev, Anton; de Waard, Anita; Turei, Denes; Luna, Augustin; Babur, Ozgun; Soliman, Sylvain; Valdeolivas, Alberto; Esteban-Medina, Marina; Pena-Chilet, Maria; Rian, Kinza; Helikar, Tomas; Puniya, Bhanwar Lal; Modos, Dezso; Treveil, Agatha; Olbei, Marton; De Meulder, Bertrand; Ballereau, Stephane; Dugourd, Aurelien; Naldi, Aurelien; Noel, Vincent; Calzone, Laurence; Sander, Chris; Demir, Emek; Korcsmaros, Tamas; Freeman, Tom C.; Auge, Franck; Beckmann, Jacques S.; Hasenauer, Jan; Wolkenhauer, Olaf; Wilighagen, Egon L.; Pico, Alexander R.; Evelo, Chris T.; Gillespie, Marc E.; Stein, Lincoln D.; Hermjakob, Henning; D'Eustachio, Peter; Saez-Rodriguez, Julio; Dopazo, Joaquin; Valencia, Alfonso; Kitano, Hiroaki; Barillot, Emmanuel; Auffray, Charles; Balling, Rudi; Schneider, Reinhard Share Save
A highly multiplexed quantitative phosphosite assay for biology and preclinical studies Keshishian, Hasmik; McDonald, E. Robert; Mundt, Filip; Melanson, Randy; Krug, Karsten; Porter, Dale A.; Wallace, Luke; Forestier, Dominique; Rabasha, Bokang; Marlow, Sara E.; Jane-Valbuena, Judit; Todres, Ellen; Specht, Harrison; Robinson, Margaret Lea; Beltran, Pierre M. Jean; Babur, Ozgun; Olive, Meagan E.; Golji, Javad; Kuhn, Eric; Burgess, Michael; MacMullan, Melanie A.; Rejtar, Tomas; Wang, Karen; Mani, D. R.; Satpathy, Shankha; Gillette, Michael A.; Sellers, William R.; Carr, Steven A. Share Save
Quantitative Phosphoproteomics And Causal Analysis Reveal Distinct And Combinatorial Signaling Mechanisms In Protease-Activated Receptor PAR1 And PAR4 Platelet Activation Programs Reitsma, Stephanie; Klimek, John; Parra-Izquierdo, Ivan; Babur, Ozgun; Melrose, Alexander; Zheng, Tony; Pang, Jiaqing; McCarty, Owen J.; Minnier, Jessica; Wilmarth, Phillip; Demir, Emek; Reddy, Ashok; David, Larry; Aslan, Joseph Share Save
Causal interactions from proteomic profiles: Molecular data meet pathway knowledge Babur, Ozgun; Luna, Augustin; Korkut, Anil; Durupinar, Funda; Siper, Metin Can; Dogrusoz, Ugur; Jacome, Alvaro Sebastian Vaca; Peckner, Ryan; Christianson, Karen E.; Jaffe, Jacob D.; Spellman, Paul T.; Aslan, Joseph E.; Sander, Chris; Demir, Emek Share Save
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