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Philipp C. Münch

department for computational biology of infection research

17H-index
57Paper Count
4.6KCitation Count
Published Papers 15
Publication Date
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Comparative assessment of large language models for microbial phenotype assignment
errGenome Biology
IF9.4
err2026-07-23
err0
errOAAI
errPhilipp C. Münch; Nasim Safaei; René Mreches; Martin Binder; Yichen Han; Gary Robertson; Eric A. Franzosa; Curtis Huttenhower; Alice Carolyn McHardy
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Comparison of different AI systems for diagnosing sepsis, septic shock, and cardiogenic shock: a retrospective study
errSCIENTIFIC REPORTS
IF3.9
err2025-05-06
err0
errOAAI
errObmann, Dirk; Muench, Philipp; Graf, Bernhard; von Jouanne-Diedrich, Holger; Zausig, York A.
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errSave
Optimized model architectures for deep learning on genomic data (vol 7, 516, 2024)
errCOMMUNICATIONS BIOLOGY
IF5.1
err2024-05-23
err0
errOAAI
errGuenduez, Hueseyin Anil; Mreches, Rene; Moosbauer, Julia; Robertson, Gary; To, Xiao-Yin; Franzosa, Eric A.; Huttenhower, Curtis; Rezaei, Mina; McHardy, Alice C.; Bischl, Bernd; Muench, Philipp C.; Binder, Martin
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Assessing computational predictions of antimicrobial resistance phenotypes from microbial genomes
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2024-05-05
err3
errOAAI
errHu, Kaixin; Meyer, Fernando; Deng, Zhi-Luo; Asgari, Ehsaneddin; Kuo, Tzu-Hao; Muench, Philipp C.; Mchardy, Alice C.
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errSave
Optimized model architectures for deep learning on genomic data
errCOMMUNICATIONS BIOLOGY
IF5.1
err2024-04-30
err1
errOAAI
errGuenduez, Hueseyin Anil; Mreches, Rene; Moosbauer, Julia; Robertson, Gary; To, Xiao-Yin; Franzosa, Eric A.; Huttenhower, Curtis; Rezaei, Mina; Mchardy, Alice C.; Bischl, Bernd; Muench, Philipp C.; Binder, Martin
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errSave
A self-supervised deep learning method for data-efficient training in genomics
errCOMMUNICATIONS BIOLOGY
IF5.1
err2023-09-11
err4
errOAAI
errGuenduez, Hueseyin Anil; Binder, Martin; To, Xiao-Yin; Mreches, Rene; Bischl, Bernd; McHardy, Alice C.; Muench, Philipp C.; Rezaei, Mina
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Rapid and accurate identification of ribosomal RNA sequences via deep learning
errNUCLEIC ACIDS RESEARCH
IF13.1
err2022-02-21
err29
errOAAI
errDeng, Zhi-Luo; Munch, Philipp C.; Mreches, Rene; McHardy, Alice C.
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errSave
In vitro interaction network of a synthetic gut bacterial community
errISME JOURNAL
IF10
err2021-12-02
err70
errOAAI
errWeiss, Anna S.; Burrichter, Anna G.; Raj, Abilash Chakravarthy Durai; von Strempel, Alexandra; Meng, Chen; Kleigrewe, Karin; Muench, Philipp C.; Roessler, Luis; Huber, Claudia; Eisenreich, Wolfgang; Jochum, Lara M.; Goeing, Stephanie; Jung, Kirsten; Lincetto, Chiara; Huebner, Johannes; Marinos, Georgios; Zimmermann, Johannes; Kaleta, Christoph; Sanchez, Alvaro; Stecher, Baerbel
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errSave
Evolutionary Stabilization of Cooperative Toxin Production through a Bacterium-Plasmid-Phage Interplay
errMBIO
IF4.7
err2020-08-25
err10
errOAAI
errSpriewald, Stefanie; Stadler, Eva; Hense, Burkhard A.; Muench, Philipp C.; McHardy, Alice C.; Weiss, Anna S.; Obeng, Nancy; Mueller, Johannes; Stecher, Barbel
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errSave
Evaluating assembly and variant calling software for strain-resolved analysis of large DNA viruses
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2020-07-07
err12
errOAAI
errDeng, Zhi-Luo; Dhingra, Akshay; Fritz, Adrian; Goetting, Jasper; Muench, Philipp C.; Steinbrueck, Lars; Schulz, Thomas F.; Ganzenmueller, Tina; McHardy, Alice C.
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errSave
Reproducible Colonization of Germ-Free Mice With the Oligo-Mouse-Microbiota in Different Animal Facilities
errFRONTIERS IN MICROBIOLOGY
IF4.5
err2020-01-10
err72
errOAAI
errEberl, Claudia; Ring, Diana; Mnch, Philipp C.; Beutler, Markus; Basic, Marijana; Slack, Emma Caroline; Schwarzer, Martin; Srutkova, Dagmar; Lange, Anna; Frick, Julia S.; Bleich, Andre; Stecher, Baerbel
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errSave
Transcriptome-wide analysis uncovers the targets of the RNA-binding protein MSI2 and effects of MSI2's RNA-binding activity on IL-6 signaling
errJOURNAL OF BIOLOGICAL CHEMISTRY
IF3.9
err2018-10-01
err35
errOAAI
errDuggimpudi, Sujitha; Kloetgen, Andreas; Maney, Sathish Kumar; Munch, Philipp C.; Hezaveh, Kebria; Shaykhalishahi, Hamed; Hoyer, Wolfgang; McHardy, Alice C.; Lang, Philipp A.; Borkhardt, Arndt; Hoell, Jessica, I
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errSave
Characterisation of a stable laboratory co-culture of acidophilic nanoorganisms
errSCIENTIFIC REPORTS
IF3.9
err2017-06-12
err39
errOAAI
errKrause, Susanne; Bremges, Andreas; Muench, Philipp C.; McHardy, Alice C.; Gescher, Johannes
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errSave
Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi (vol 7, 11362, 2016)
errNATURE COMMUNICATIONS
IF15.7
err2016-09-29
err2
errOAAI
errHacquard, Stephane; Kracher, Barbara; Hiruma, Kei; Munch, Philipp C.; Garrido-Oter, Ruben; Thon, Michael R.; Weimann, Aaron; Damm, Ulrike; Dallery, Jean-Felix; Hainaut, Matthieu; Henrissat, Bernard; Lespinet, Olivier; Sacristan, Soledad; van Themaat, Emiel Ver Loren; Kemen, Eric; McHardy, Alice C.; Schulze-Lefert, Paul; O'Connell, Richard J.
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errSave
Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi
errNATURE COMMUNICATIONS
IF15.7
err2016-05-06
err184
errOAAI
errHacquard, Stephane; Kracher, Barbara; Hiruma, Kei; Muech, Philipp C.; Garrido-Oter, Ruben; Thon, Michael R.; Weimann, Aaron; Damm, Ulrike; Dallery, Jean-Felix; Hainaut, Matthieu; Henrissat, Bernard; Lespinet, Olivier; Sacristan, Soledad; van Themaat, Emiel Ver Loren; Kemen, Eric; McHardy, Alice C.; Schulze-Lefert, Paul; O'Connell, Richard J.
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errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
B
Bernard Henrissat
H-index: 170 · Papers: 1.1K
C
Curtis Huttenhower
H-index: 142 · Papers: 638
P
Paul Schulze‐Lefert
H-index: 104 · Papers: 289
A
Arndt Borkhardt
H-index: 85 · Papers: 823
T
Thomas F. Schulz
H-index: 79 · Papers: 547
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