Not logged in From use cases to infrastructure: a cross-institutional survey of priorities in data-driven biomedical research Mazumder, Raja; Keeney, Jonathon; Johnson, Luke; Krammer, Lori; McNeely, Patrick; Sepulveda, Jorge; Hangen, Danielle; Martin, Maria; Jyothi, Dushyanth; De Almeida, Jonas; McGarvey, Peter; Alaoui, Adil; Cha, Sarah; Sedrakyan, Art; Shoelle, Evan; Matheny, Michael; LeNoue-Newton, Michele; Winter, Robert; Deppen, Stephen; Simonyan, Vahan; Horvath, Anelia Share Save
Playbook workflow builder: Interactive construction of bioinformatics workflows Clarke, Daniel J. B.; Evangelista, John Erol; Xie, Zhuorui; Marino, Giacomo B.; Byrd, Anna I.; Maurya, Mano R.; Srinivasan, Sumana; Yu, Keyang; Petrosyan, Varduhi; Roth, Matthew E.; Milinkov, Miroslav; King, Charles Hadley; Vora, Jeet Kiran; Keeney, Jonathon; Nemarich, Christopher; Khan, William; Lachmann, Alexander; Ahmed, Nasheath; Agris, Alexandra; Pan, Juncheng; Ramachandran, Srinivasan; Fahy, Eoin; Esquivel, Emmanuel; Mihajlovic, Aleksandar; Jevtic, Bosko; Milinovic, Vuk; Kim, Sean; McNeely, Patrick; Wang, Tianyi; Wenger, Eric; Brown, Miguel A.; Sickler, Alexander; Zhu, Yuankun; Jenkins, Sherry L.; Blood, Philip D.; Taylor, Deanne M.; Resnick, Adam C.; Mazumder, Raja; Milosavljevic, Aleksandar; Subramaniam, Shankar; Ma'ayan, Avi Share Save
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Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy Martinez, Karina; Agirre, Jon; Akune, Yukie; Aoki-Kinoshita, Kiyoko F.; Arighi, Cecilia; Axelsen, Kristian B.; Bolton, Evan; Bordeleau, Emily; Edwards, Nathan J.; Fadda, Elisa; Feizi, Ten; Hayes, Catherine; Ives, Callum M.; Joshi, Hiren J.; Krishna Prasad, Khakurel; Kossida, Sofia; Lisacek, Frederique; Liu, Yan; Luetteke, Thomas; Ma, Junfeng; Malik, Adnan; Martin, Maria; Mehta, Akul Y.; Neelamegham, Sriram; Panneerselvam, Kalpana; Ranzinger, Rene; Ricard-Blum, Sylvie; Sanou, Gaoussou; Shanker, Vijay; Thomas, Paul D.; Tiemeyer, Michael; Urban, James; Vita, Randi; Vora, Jeet; Yamamoto, Yasunori; Mazumder, Raja Share Save
CEACAM1 induces microbiome and metabolite driven diversion of TGF-β signaling to promote colon cancer Bhowmick, Krishanu; Ohshiro, Kazufumi; Xiang, Xiyan; John, Sahara; Yang, Xiaochun; Idicula, Kevin; Beauchemin, Nicole; Mazumder, Raja; Crandall, Keith A.; Hassan, Mohammad I.; Mohammad, Taj; Mishra, Lopa Share Save
Communicating computational workflows in a regulatory environment Keeney, Jonathon G.; Gulzar, Naila; Baker, Jack B.; Klempir, Ondrej; Hannigan, Geoffrey D.; Bitton, Danny A.; Maritz, Julia M.; King, Charles H. S.; Patel, Janisha A.; Duncan, Paul; Mazumder, Raja Share Save
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Impact of sex differences on cross- talk between the gut microbiome, CEACAMs, and TGF-β signaling in cancers Bhowmick, Krishanu; Klebanov, Addison; John, Sahara; Yang, Xiaochun; Xiang, Xiyan; Vegesna, Anil; Ohshiro, Kazufumi; Crawford, James M.; Beauchemin, Nicole; Mazumder, Raja; Crandall, Keith A.; Mishra, Lopa Share Save
The Glycan Structure Dictionary-a dictionary describing commonly used glycan structure terms Vora, Jeet; Navelkar, Rahi; Vijay-Shanker, K.; Edwards, Nathan; Martinez, Karina; Ding, Xiying; Wang, Tianyi; Su, Peng; Ross, Karen; Lisacek, Frederique; Hayes, Catherine; Kahsay, Robel; Ranzinger, Rene; Tiemeyer, Michael; Mazumder, Raja Share Save
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Modeling and integration of N-glycan biomarkers in a comprehensive biomarker data model Lyman, Daniel F.; Bell, Amanda; Black, Alyson; Dingerdissen, Hayley; Cauley, Edmund; Gogate, Nikhita; Liu, David; Joseph, Ashia; Kahsay, Robel; Crichton, Daniel J.; Mehta, Anand; Mazumder, Raja Share Save
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Communicating regulatory high- throughput sequencing data using BioCompute Objects King, Charles Hadley S.; Keeney, Jonathon; Guimera, Nuria; Das, Souvik; Weber, Michiel; Fochtman, Brian; Walderhaug, Mark O.; Talwar, Sneh; Patel, Janisha A.; Mazumder, Raja; Donaldson, Eric F. Share Save
Enhancing the interoperability of glycan data flow between ChEBI, PubChem and GlyGen Navelkar, Rahi; Owen, Gareth; Mutherkrishnan, Venkatesh; Thiessen, Paul; Cheng, Tiejun; Bolton, Evan; Edwards, Nathan; Tiemeyer, Michael; Campbell, Matthew P.; Martin, Maria; Vora, Jeet; Kahsay, Robel; Mazumder, Raja Share Save
COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model Gogate, Nikhita; Lyman, Daniel; Bell, Amanda; Cauley, Edmund; Crandall, Keith A.; Joseph, Ashia; Kahsay, Robel; Natale, Darren A.; Schriml, Lynn M.; Sen, Sabyasach; Mazumder, Raja Share Save
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Bioinformatics tools developed to support BioCompute Objects Patel, Janisha A.; Dean, Dennis A.; King, Charles Hadley; Xiao, Nan; Koc, Soner; Minina, Ekaterina; Golikov, Anton; Brooks, Phillip; Kahsay, Robel; Navelkar, Rahi; Ray, Manisha; Roberson, Dave; Armstrong, Chris; Mazumder, Raja; Keeney, Jonathon Share Save
OncoMX: A Knowledgebase for Exploring Cancer Biomarkers in the Context of Related Cancer and Healthy Data Dingerdissen, Hayley M.; Bastian, Frederic; Vijay-Shanker, K.; Robinson-Rechavi, Marc; Bell, Amanda; Gogate, Nikhita; Gupta, Samir; Holmes, Evan; Kahsay, Robel; Keeney, Jonathon; Kincaid, Heather; King, Charles Hadley; Liu, David; Crichton, Daniel J.; Mazumder, Raja Share Save
Streamlined Subpopulation, Subtype, and Recombination Analysis of HIV-1 Half-Genome Sequences Generated by High-Throughput Sequencing Hora, Bhavna; Gulzar, Naila; Chen, Yue; Karagiannis, Konstantinos; Cai, Fangping; Su, Chang; Smith, Krista; Simonyan, Vahan; Shah, Sharaf Ali; Ahmed, Manzoor; Sanchez, Ana M.; Stone, Mars; Cohen, Myron S.; Denny, Thomas N.; Mazumder, Raja; Gao, Feng Share Save
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