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Yasushi Ishihama

kyoto university

72H-index
417Paper Count
3.1WCitation Count
Published Papers 176
Publication Date
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Light-Activated Protein-Imprinted Hydrogels Capable of Translating Protein Surface Accessibility Into Missing-Peptide Footprints
errSmall Structures
IF11.3
err2026-06-17
err0
errOAAI
errEisuke Kanao; Taichi Nihei; Kankichi Kako; Asato Maeda; Damla Ulker; Hiroshi Nishida; Kosuke Ogata; Mingdi Yan; Sergey Piletsky; Yasushi Ishihama; Takuya Kubo
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Detecting protein higher-order structural changes using kinase as a phospho-labeler
errCell Reports Methods
IF4.5
err2026-05-27
err0
errOAAI
errAsato Maeda; Kosuke Ogata; Yasushi Ishihama
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errSave
Bottom-up proteomics under acidic conditions using protease type XIII from Aspergillus saitoi
errMolecular & Cellular Proteomics
IF5.5
err2025-11-15
err0
errOAAI
errRyota Tomioka; Ayana Tomioka; Kosuke Ogata; Yasushi Ishihama
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errSave
The ProteomeXchange consortium in 2026: making proteomics data FAIR
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-11-01
err1
PREAI
errDeutsch, Eric W.; Bandeira, Nuno; Perez-Riverol, Yasset; Sharma, Vagisha; Carver, Jeremy j; Mendoza, Luis; Kundu, Deepti J.; Bandla, Chakradhar; Kamatchinathan, Selvakumar; Hewapathirana, Suresh; Sun, Zhi; Kawano, Shin; Okuda, Shujiro; Connolly, Brian; Maclean, Brendan; Maccoss, Michael J.; Chen, Tao; Zhu, Yunping; Ishihama, Yasushi; Vizcaino, Juan Antonio
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errSave
The mitotic STAG3–cohesin complex shapes male germline nucleome
errNature Structural & Molecular Biology
IF10.1
err2025-08-25
err0
PREAI
errMasahiro Nagano; Bo Hu; Kosuke Ogata; Fumiya Umemura; Yukiko Ishikura; Shinnosuke Suzuki; Christos C. Katsifis; Masanori Yoshinaga; Gabriele Litos; Kota Nagasaka; Wen Tang; Yoshiaki Nosaka; Hiromichi Sasada; Hanbo Wang; Daichi Kondo; Yoshitaka Katou; Ken Mizuta; Yukihiro Yabuta; Hiroshi Ohta; Francisca Nathalia de Luna Vitorino; Hiroshi Arima; Takafumi Ichikawa; Michele Gabriele; Jacek Majewski; Benjamin A. Garcia; Osamu Takeuchi; Shosei Yoshida; Anders S. Hansen; Jan-Michael Peters; Yasushi Ishihama; Mitinori Saitou
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UniScore, a unified and universal measure for peptide identification by multiple search engines
errMolecular & Cellular Proteomics
IF5.5
err2025-07-01
err0
errOAAI
errTsuyoshi Tabata; Akiyasu C. Yoshizawa; Kosuke Ogata; Chih-Hsiang Chang; Norie Araki; Naoyuki Sugiyama; Yasushi Ishihama
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errSave
A Methanolic Urea-enhanced Protein Extraction Enabling the Largest Bacterial Phosphorylation Resource
errMolecular & Cellular Proteomics
IF5.5
err2025-06-01
err0
errOAAI
errPei-Shan Wu; Ting-An Chen; Bo-Yu Chen; Yasushi Ishihama; Miao-Hsia Lin
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errSave
Meeting Report: The Japanese-German Symposium on the Advancement and Application of Proteoform-Centric Proteomics (Kyoto, Japan, 2024)
errPROTEOMICS
IF3.9
err2025-05-20
err0
PREAI
errNobuaki Takemori; Philipp T. Kaulich; Jan Hahn; Hartmut Schlüter; Naoyuki Sugiyama; Kazuya Tsumagari; Yasushi Ishihama; Sabine Fuchs; Mio Iwasaki
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errSave
Visible light-mediated photocatalytic coupling between tetrazoles and carboxylic acids for biomolecule labelling
errCHEMICAL COMMUNICATIONS
IF4.2
err2025-03-01
err0
errOAAI
errMatsuoka, Takuro; Takasaki, Ryosuke; Akiba, Hiroki; Ogata, Kosuke; Hattori, Akira; Arichi, Norihito; Kakeya, Hideaki; Yamasaki, Sho; Ishihama, Yasushi; Ohno, Hiroaki; Inuki, Shinsuke
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errSave
Novel Separation Media with Metal Oxide Nanostructures for Capillary Electrochromatography
errACS MEASUREMENT SCIENCE AU
IF9
err2025-02-16
err0
errOAAI
errNakano, K; Kamei, R; Kanao, E; Hosomi, T; Yamada, SK; Ishihama, Y; Yanagida, T; Kubo, T
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errSave
Receptor-independent regulation of Ga13 by alpha-1-antitrypsin C-terminal peptides
errJOURNAL OF BIOLOGICAL CHEMISTRY
IF3.9
err2025-02-01
err0
errOAAI
errPark, Yonghak; Matsumoto, Shigeyuki; Ogata, Kosuke; Ma, Biao; Kanada, Ryo; Isaka, Yuta; Arichi, Norihito; Liang, Xiaowen; Maki, Ritsuko; Kozasa, Tohru; Okuno, Yasushi; Ohno, Hiroaki; Ishihama, Yasushi; Toyoshima, Fumiko
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Highly sequence-specific, timing-controllable m6A demethylation by modulating RNA-binding affinity of m6A erasers
errCHEMICAL COMMUNICATIONS
IF4.2
err2025-01-01
err0
errOAAI
errOtonari, Kenko; Asami, Yuri; Ogata, Kosuke; Ishihama, Yasushi; Futaki, Shiroh; Imanishi, Miki
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errSave
High-Recovery Desalting Tip Columns for a Wide Variety of Peptides in Mass Spectrometry-Based Proteomics
errANALYTICAL CHEMISTRY
IF6.7
err2024-12-16
err0
errOAAI
errKanao, Eisuke; Tanaka, Shunsuke; Tomioka, Ayana; Ogata, Kosuke; Tanigawa, Tetsuya; Kubo, Takuya; Ishihama, Yasushi
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errSave
jPOST environment accelerates the reuse and reanalysis of public proteome mass spectrometry data
errNUCLEIC ACIDS RESEARCH
IF13.1
err2024-11-11
err1
errOAAI
errOkuda, Shujiro; Yoshizawa, Akiyasu C.; Kobayashi, Daiki; Takahashi, Yushi; Watanabe, Yu; Moriya, Yuki; Hatano, Atsushi; Takami, Tomoyo; Matsumoto, Masaki; Araki, Norie; Tabata, Tsuyoshi; Iwasaki, Mio; Sugiyama, Naoyuki; Kodera, Yoshio; Tanaka, Satoshi; Goto, Susumu; Kawano, Shin; Ishihama, Yasushi
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errSave
A Direct Approach for Living Biomembrane Printing on a Nanoparticle
errNANO LETTERS
IF9.1
err2024-10-08
err0
PREAI
errMizuta, Ryosuke; Kanao, Eisuke; Ukyo, Keigo; Kuwada, Shusuke; Sawada, Shin-ichi; Ishihama, Yasushi; Akiyoshi, Kazunari; Sasaki, Yoshihiro
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errSave
AP-1B regulates interactions of epithelial cells and intraepithelial lymphocytes in the intestine
errCELLULAR AND MOLECULAR LIFE SCIENCES
IF6.2
err2024-10-05
err0
errOAAI
errMatsumoto, Ryohtaroh; Ogata, Kosuke; Takahashi, Daisuke; Kinashi, Yusuke; Yamada, Takahiro; Morita, Ryo; Tanaka, Keisuke; Hattori, Kouya; Endo, Mayumi; Fujimura, Yumiko; Sasaki, Nobuo; Ohno, Hiroshi; Ishihama, Yasushi; Kimura, Shunsuke; Hase, Koji
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Revisiting Protein Reversed-Phase Chromatography for Bottom-Up Proteomics
errJOURNAL OF PROTEOME RESEARCH
IF3.6
err2024-09-18
err0
PREAI
errTakagi, Shunsuke; Suzuki, Nobuyuki; Ishihama, Yasushi
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One-step N-Terminomics Based on Isolation of Protein N-Terminal Peptides From LysargiNase Digests by Tip-Based Strong Cation Exchange Chromatography
errMOLECULAR & CELLULAR PROTEOMICS
IF5.5
err2024-09-01
err0
errOAAI
errMorikawa, Kazuya; Nishida, Hiroshi; Imami, Koshi; Ishihama, Yasushi
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errSave
Thermostability-assisted limited proteolysis-coupled mass spectrometry for capturing drug target proteins and sites
errANALYTICA CHIMICA ACTA
IF6
err2024-07-01
err1
PREAI
errYang, Liu; Guo, Chen-Wan; Luo, Qi-Ming; Guo, Zi-Fan; Chen, Ling; Ishihama, Yasushi; Li, Ping; Yang, Hua; Gao, Wen
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errSave
Long-read sequencing for 29 immune cell subsets reveals disease-linked isoforms
errNATURE COMMUNICATIONS
IF15.7
err2024-05-28
err4
errOAAI
errInamo, Jun; Suzuki, Akari; Ueda, Mahoko Takahashi; Yamaguchi, Kensuke; Nishida, Hiroshi; Suzuki, Katsuya; Kaneko, Yuko; Takeuchi, Tsutomu; Hatano, Hiroaki; Ishigaki, Kazuyoshi; Ishihama, Yasushi; Yamamoto, Kazuhiko; Kochi, Yuta
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Research Directions

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Co-authors
Cooperation Journals
M
Matthias Mann
H-index: 250 · Papers: 1.4K
K
Kazuo Shinozaki
H-index: 202 · Papers: 1.3K
R
Robert G. Roeder
H-index: 162 · Papers: 679
K
Kazuko Yamaguchi‐Shinozaki
H-index: 159 · Papers: 457
H
Hideyuki Okano
H-index: 145 · Papers: 1.8K
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