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The IGVF catalog-from genetic variation to function Li, Daofeng; Liu, Shane; Assis, Pedro R.; Li, Mingjie; Dong, Shengcheng; Whaling, Ian; Jolanki, Otto; Kagda, Meenakshi; Zhang, Wenjin; Macias-Velasco, Juan F.; Liu, Tianjie; Cody, Sarah; Antonacci-Fulton, Lucinda; Huang, Yuanhao; Liu, Jie; Montgomery, Michael T.; Zeiberg, Daniel; Jain, Shantanu; Pejaver, Vikas; Bergquist, Timothy; Chen, Yile; Radivojac, Predrag; Gersbach, Charles A.; Sherpa, Rintsen N.; Castro, Christopher P.; Boyle, Alan P.; Starita, Lea M.; Fowler, Douglas M.; Ahituv, Nadav; Dey, Kushal K.; Majoros, William H.; Reddy, Timothy E.; Craven, Mark; Sinha, Riya; Sverchkov, Yuriy; Cai, Xiangmeng; Nzima, Mpathi Z.; Calderwood, Michael A.; Rozowsky, Joel; Gerstein, Mark; Ma, Jian; Yue, Feng; Cherry, J. Michael; Love, Michael, I; Engreitz, Jesse M.; Hitz, Benjamin C.; Wang, Ting Share Save
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Spatial multiomic landscape of the human placenta at molecular resolution Ounadjela, Johain R.; Zhang, Ke; Kobayashi-Kirschvink, Koseki J.; Jin, Kang; J. C. Russell, Andrew; Lackner, Andreas I.; Callahan, Claire; Viggiani, Francesca; Dey, Kushal K.; Jagadeesh, Karthik; Maxian, Theresa; Prandstetter, Anna-Maria; Nadaf, Naeem; Gong, Qiyu; Raichur, Ruth; Zvezdov, Morgan L.; Hui, Mingyang; Simpson, Mattew; Liu, Xinwen; Min, Wei; Knoefler, Martin; Chen, Fei; Haider, Sandra; Shu, Jian Share Save
CRISPR screening uncovers a long-range enhancer for ONECUT1 in pancreatic differentiation and links a diabetes risk variant Kaplan, Samuel Joseph; Wong, Wilfred; Yan, Jielin; Pulecio, Julian; Cho, Hyein S.; Li, Qianzi; Zhao, Jiahui; Leslie-Iyer, Jayanti; Kazakov, Jonathan; Murphy, Dylan; Luo, Renhe; Dey, Kushal K.; Apostolou, Effie; Leslie, Christina S.; Huangfu, Danwei Share Save
Single-cell multi-ome regression models identify functional and disease-associated enhancers and enable chromatin potential analysis (vol 56, pg 627, 2024) Mitra, Sneha; Malik, Rohan; Wong, Wilfred; Rahman, Afsana; Hartemink, Alexander J.; Pritykin, Yuri; Dey, Kushal K.; Leslie, Christina S. Share Save
Tissue-specific enhancer-gene maps from multimodal single-cell data identify causal disease alleles Sakaue, Saori; Weinand, Kathryn; Isaac, Shakson; Dey, Kushal K.; Jagadeesh, Karthik; Kanai, Masahiro; Watts, Gerald F. M.; Zhu, Zhu; Brenner, Michael B.; McDavid, Andrew; Donlin, Laura T.; Wei, Kevin; Price, Alkes L.; Raychaudhuri, Soumya Share Save
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Mapping the dynamic genetic regulatory architecture of HLA genes at single-cell resolution Kang, Joyce B.; Shen, Amber Z.; Gurajala, Saisriram; Nathan, Aparna; Rumker, Laurie; Aguiar, Vitor R. C.; Valencia, Cristian; Lagattuta, Kaitlyn A.; Zhang, Fan; Jonsson, Anna Helena; Yazar, Seyhan; Alquicira-Hernandez, Jose; Khalili, Hamed; Ananthakrishnan, Ashwin N.; Jagadeesh, Karthik; Dey, Kushal; Albrecht, Jennifer; Apruzzese, William; Banda, Nirmal; Barnas, Jennifer L.; Bathon, Joan M.; Ben-Artzi, Ami; Boyce, Brendan F.; Boyle, David L.; Bridges, S. Louis; Bykerk, Vivian P.; Campbell, Debbie; Ceponis, Arnold; Cordle, Andrew; Deane, Kevin D.; Firestein, Gary S.; James, Judith A.; Weinand, Kathryn; Xavier, Ramnik J.; Rao, Deepak A.; Brenner, Michael B.; Gutierrez-Arcelus, Maria; Luo, Yang; Sakaue, Saori; Raychaudhuri, Soumya Share Save
Scalable genetic screening for regulatory circuits using compressed Perturb-seq Yao, Douglas; Binan, Loic; Bezney, Jon; Simonton, Brooke; Freedman, Jahanara; Frangieh, Chris J.; Dey, Kushal; Geiger-Schuller, Kathryn; Eraslan, Basak; Gusev, Alexander; Regev, Aviv; Cleary, Brian Share Save
SAIGE-GENE+ improves the efficiency and accuracy of set-based rare variant association tests (vol 54, pg 1446, 2022) Zhou, Wei; Bi, Wenjian; Zhao, Zhangchen; Dey, Kushal K.; Jagadeesh, Karthik A.; Karczewski, Konrad J.; Daly, Mark J.; Neale, Benjamin M.; Lee, Seunggeun Share Save
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Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data Zhang, Martin Jinye; Hou, Kangcheng; Dey, Kushal K.; Sakaue, Saori; Jagadeesh, Karthik A.; Weinand, Kathryn; Taychameekiatchai, Aris; Rao, Poorvi; Pisco, Angela Oliveira; Zou, James; Wang, Bruce; Gandal, Michael; Raychaudhuri, Soumya; Pasaniuc, Bogdan; Price, Alkes L. Share Save
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Combining SNP-to-gene linking strategies to identify disease genes and assess disease omnigenicity Gazal, Steven; Weissbrod, Omer; Hormozdiari, Farhad; Dey, Kushal K.; Nasser, Joseph; Jagadeesh, Karthik A.; Weiner, Daniel J.; Shi, Huwenbo; Fulco, Charles P.; O'Connor, Luke J.; Pasaniuc, Bogdan; Engreitz, Jesse M.; Price, Alkes L. Share Save
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