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Stephen J. Mondo

lawrence berkeley national laboratory

34H-index
119Paper Count
4.5KCitation Count
Published Papers 54
Publication Date
Evolution, structure and function of the putative biosynthetic gene cluster of the fungal secondary metabolite myriocin, a potent inhibitory sphingolipid
err2026-07-17
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errBen Rutter; Michael A. Herrera; Gustavo Perez Ortiz; Claudio Greco; Ben Ashley; Hai Deng; Abigail Hay; Cameron Bedford; Marius Wenzel; Stephen Mondo; Zachary Konkel; Jason C. Slot; Qinxi Ma; Nicolas Helmstetter; Rhys A. Farrer; Dominic J. Campopiano; Alexandra C. Brand
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Phenogenomics reveals the ecology and evolution of Trichoderma fungi for sustainable agriculture
err2026-03-03
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errAndrei S. Steindorff; Feng M. Cai; Mingyue Ding; Siqi Jiang; Lea Atanasova; Scott E. Baker; Jomal Rodrigues Barbosa-Filho; Gunseli Bayram Akcapinar; Daren W. Brown; Priscila Chaverri; Peijie Chen; Komal Chenthamara; Chris Daum; Elodie Drula; Mukesh Dubey; Mikael Brandström Durling; Daniel Flatschacher; Thomas Ebner; Tamás Emri; Renwei Gao; Raphaela Castro Georg; Bernard Henrissat; Rosa Hermosa; Alfredo Herrera-Estrella; Wolfgang Hinterdobler; Philipp Kainz; Magnus Karlsson; László Kredics; Christian P. Kubicek; Alan Kuo; Kurt LaButti; Anna Lipzen; Matteo Lorito; Robert L. Mach; Gelsomina Manganiello; Tamás Marik; Natalia Martinez-Reyes; Michael Mayrhofer-Reinhartshuber; Márton Miskei; Marie-Claude Moisan; Stephen Mondo; Enrique Monte; Vivian Ng; Guan Pang; Jasmyn Pangilinan; Mao Peng; Edoardo Piombo; István Pócsi; Mohammad Javad Rahimi; Sumitha K. Reddy; Robert Riley; Sabrina Sarrocco; Matthias Schmal; Monika Schmoll; Attila Szűcs; Sheridan L. Woo; Oded Yarden; Susanne Zeilinger; Christian Zimmermann; Ekaterina Shelest; Adrian Tsang; Randy Berka; Ronald P. de Vries; Igor V. Grigoriev; Irina S. Druzhinina
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Comparative mitogenomics of kingdom Fungi - evolutionary insights and metagenomic applications
err2026-01-27
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PREAI
errAhrendt, Steven R.; Haridas, Sajeet; Stong, Spencer; Salamov, Asaf; Steindorff, Andrei; LaButti, Kurt; Riley, Robert; Shabalov, Igor; Lukashin, Igor; Dusheyko, Serge; Schulz, Frederik; Romero, Miguel F.; Villada, Juan C.; Grigoriev, Igor, V; Mondo, Stephen J.
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Unveiling a pervasive DNA adenine methylation regulatory network in the early-diverging fungus Rhizopus microsporus
err2025-11-21
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errCarlos Lax; Leo A. Baumgart; Ghizlane Tahiri; Natalia Nicolás-Muñoz; Yu Zhang; Ian K. Blaby; Stephen J. Mondo; Bishoy Kamel; Ronan C. O’Malley; Vivian Ng; Eusebio Navarro; Igor V. Grigoriev; Francisco E. Nicolás; Victoriano Garre
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Draft genome of the switchgrass head smut pathogen Tilletia maclaganii
err2025-11-01
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PREAI
errBenucci, Gian Maria Niccolo; Myers, Kevin L.; Wijewardana, Chathu; Bergstrom, Gary C.; Mondo, Stephen; Riley, Robert; Lipzen, Anna; Del Rosario, Jonathan; Yan, Mi; Ng, Vivian; Grigoriev, Igor V.; Vanwallendael, Acer; Lowry, David B.
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Myco-Ed: Mycological curriculum for education and discovery (vol 21, e1013303, 2025)
err2025-10-01
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errBranco, Sara; Avis, Peter G.; Barry, Kerrie; Bates, Scott; Cobian, Gerald M.; Dow, Ellen G.; Gremillion, Sara; Honan, Amy; Knight, Chinyere A.; Labutti, Kurt; Quandt, C. Alisha; Stewart, Jane E.; Talag, Jayson; Wilson, Andrew W.; Lofgren, Lotus; Mondo, Stephen James
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A genomic perspective on fungal diversity and evolution
err2025-06-30
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PREAI
errStephen J. Mondo; Igor V. Grigoriev
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A Comparison of the Biotechnological Potential of Marine and Terrestrial Species of Two Orders of Sordariomycete Fungi
err2025-06-25
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PREAI
errRaquel Ledo Doval; Astrid Müller; Daren W. Brown; Derek Johnson; C. Alisha Quandt; Kerrie Barry; Alicia Clum; Hope Hundley; Kurt LaButti; Anna Lipzen; Stephen J. Mondo; Robin A. Ohm; Jasmyn L. Pangilinan; Robert W. Riley; Andrei S. Steindorff; Mei Wang; Elodie Drula; Bernard Henrissat; Kathryn Bushley; Joseph W. Spatafora; Mao Peng; Igor V. Grigoriev; Ronald P. de Vries
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Consecutive low-frequency shifts in A/T content denote nucleosome positions across microeukaryotes
err2025-05-01
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errMondo, Stephen J.; He, Guifen; Sharma, Aditi; Ciobanu, Doina; Riley, Robert; Andreopoulos, William B.; Lipzen, Anna; Kuo, Alan; LaButti, Kurt; Pangilinan, Jasmyn; Salamov, Asaf; Salamon, Hugh; Shu, Lili; Gladden, John; Magnuson, Jon; Aime, M. Catherine; O'Malley, Ronan; Grigoriev, Igor V.
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Symmetric adenine methylation is an essential DNA modification in the early-diverging fungus Rhizopus microsporus
err2025-04-24
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errLax, Carlos; Mondo, Stephen J.; Martinez, Jose F.; Baumgart, Leo A.; Perez-Ruiz, Jose A.; Carrillo-Marin, Pablo; LaButti, Kurt; Zhang, Yu; Guo, Jie; Ng, Vivian; Navarro, Eusebio; Pawlowska, Teresa E.; Grigoriev, Igor V.; Nicolas, Francisco E.; Garre, Victoriano
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Section-level genome sequencing and comparative genomics of Aspergillus sections Cavernicolus and Usti
err2025-01-01
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PREAI
errNybo, J. L.; Vesth, T. C.; Theobald, S.; Frisvad, J. C.; Larsen, T. O.; Kjaerboelling, I.; Rothschild-Mancinelli, K.; Lyhne, E. K.; Barry, K.; Clum, A.; Yoshinaga, Y.; Ledsgaard, L.; Daum, C.; Lipzen, A.; Kuo, A.; Riley, R.; Mondo, S.; Labutti, K.; Haridas, S.; Pangalinan, J.; Salamov, A. A.; Simmons, B. A.; Magnuson, J. K.; Chen, J.; Drula, E.; Henrissat, B.; Wiebenga, A.; Lubbers, R. J. M.; Muller, A.; Gomes, A. C. dos Santos; Makela, M. R.; Stajich, J. E.; Grigorie, I., V; Mortensen, U. H.; Andersen, M. R.
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Omics-driven onboarding of the carotenoid producing red yeast Xanthophyllomyces dendrorhous CBS 6938
err2024-12-28
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errTobin, Emma E.; Collins, Joseph H.; Marsan, Celeste B.; Nadeau, Gillian T.; Mori, Kim; Lipzen, Anna; Mondo, Stephen; Grigoriev, Igor V.; Young, Eric M.
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Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses
err2024-09-12
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errSteindorff, Andrei S.; Aguilar-Pontes, Maria Victoria; Robinson, Aaron J.; Andreopoulos, Bill; Labutti, Kurt; Kuo, Alan; Mondo, Stephen; Riley, Robert; Otillar, Robert; Haridas, Sajeet; Lipzen, Anna; Grimwood, Jane; Schmutz, Jeremy; Clum, Alicia; Reid, Ian D.; Moisan, Marie-Claude; Butler, Gregory; Nguyen, Thi Truc Minh; Dewar, Ken; Conant, Gavin; Drula, Elodie; Henrissat, Bernard; Hansel, Colleen; Singer, Steven; Hutchinson, Miriam I.; de Vries, Ronald P.; Natvig, Donald O.; Powell, Amy J.; Tsang, Adrian; Grigoriev, Igor V.
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Symmetric and asymmetric DNA N6-adenine methylation regulates different biological responses in Mucorales
err2024-07-18
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errLax, Carlos; Mondo, Stephen J.; Osorio-Concepcion, Macario; Muszewska, Anna; Corrochano-Luque, Maria; Gutierrez, Gabriel; Riley, Robert; Lipzen, Anna; Guo, Jie; Hundley, Hope; Amirebrahimi, Mojgan; Ng, Vivian; Lorenzo-Gutierrez, Damaris; Binder, Ulrike; Yang, Junhuan; Song, Yuanda; Canovas, David; Navarro, Eusebio; Freitag, Michael; Gabaldon, Toni; Grigoriev, Igor V.; Corrochano, Luis M.; Nicolas, Francisco E.; Garre, Victoriano
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Evolutionary history of arbuscular mycorrhizal fungi and genomic signatures of obligate symbiosis
err2024-05-29
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errRosling, Anna; Sahraei, Shadi Eshghi; Khan, Faheema Kalsoom; Desiro, Alessandro; Bryson, Abigail E.; Mondo, Stephen J.; Grigoriev, Igor, V; Bonito, Gregory; Sanchez-Garcia, Marisol
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Oxygenation influences xylose fermentation and gene expression in the yeast genera Spathaspora and Scheffersomyces
err2024-02-07
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errBarros, Katharina O.; Mader, Megan; Krause, David J.; Pangilinan, Jasmyn; Andreopoulos, Bill; Lipzen, Anna; Mondo, Stephen J.; Grigoriev, Igor V.; Rosa, Carlos A.; Sato, Trey K.; Hittinger, Chris Todd
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Genome-scale phylogeny and comparative genomics of the fungal order Sordariales
err2023-12-01
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errHensen, Noah; Bonometti, Lucas; Westerberg, Ivar; Brannstrom, Ioana Onut; Guillou, Sonia; Cros-Aarteil, Sandrine; Calhoun, Sara; Haridas, Sajeet; Kuo, Alan; Mondo, Stephen; Pangilinan, Jasmyn; Riley, Robert; Labutti, Kurt; Andreopoulos, Bill; Lipzen, Anna; Chen, Cindy; Yan, Mi; Daum, Chris; Ng, Vivian; Clum, Alicia; Steindorff, Andrei; Ohm, Robin A.; Martin, Francis; Silar, Philippe; Natvig, Donald O.; Lalanne, Christophe; Gautier, Valerie; Ament-Velasquezi, Sandra Lorena; Kruys, Asa; Hutchinson, Miriam I.; Powell, Amy Jo; Barry, Kerrie; Miller, Andrew N.; Grigoriev, Igor, V; Debuchy, Robert; Gladieux, Pierre; Thoren, Markus Hiltunen; Johannesson, Hanna
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Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi
err2023-09-18
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errLongley, Reid; Robinson, Aaron; Liber, Julian A.; Bryson, Abigail E.; Morales, Demosthenes P.; Labutti, Kurt; Riley, Robert; Mondo, Stephen J.; Kuo, Alan; Yoshinaga, Yuko; Daum, Chris; Barry, Kerrie; Grigoriev, Igor V.; Desiro, Alessandro; Chain, Patrick S. G.; Bonito, Gregory
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Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?
err2023-07-18
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errGryganskyi, Andrii P.; Golan, Jacob; Muszewska, Anna; Idnurm, Alexander; Dolatabadi, Somayeh; Mondo, Stephen J.; Kutovenko, Vira B.; Kutovenko, Volodymyr O.; Gajdeczka, Michael T.; Anishchenko, Iryna M.; Pawlowska, Julia; Tran, Ngoc Vinh; Ebersberger, Ingo; Voigt, Kerstin; Wang, Yan; Chang, Ying; Pawlowska, Teresa E.; Heitman, Joseph; Vilgalys, Rytas; Bonito, Gregory; Benny, Gerald L.; Smith, Matthew E.; Reynolds, Nicole; James, Timothy Y.; Grigoriev, Igor V.; Spatafora, Joseph W.; Stajich, Jason E.
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Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors
err2023-03-17
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errWang, Yan; Chang, Ying; Ortanez, Jericho; Pena, Jesus F.; Carter-House, Derreck; Reynolds, Nicole K.; Smith, Matthew E.; Benny, Gerald; Mondo, Stephen J.; Salamov, Asaf; Lipzen, Anna; Pangilinan, Jasmyn; Guo, Jie; LaButti, Kurt; Andreopolous, William; Tritt, Andrew; Keymanesh, Keykhosrow; Yan, Mi; Barry, Kerrie; Grigoriev, Igor, V; Spatafora, Joseph W.; Stajich, Jason E.
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