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B Bernstein

dana-farber cancer institute

118H-index
2.6KPaper Count
13.4WCitation Count
Published Papers 110
Publication Date
Fibroblast growth factor receptor inhibition for succinate dehydrogenase-deficient gastrointestinal stromal tumors: a phase 2 trial
err2026-05-26
err0
errOAAI
errPriscilla Merriam; James J. Morrow; Emanuele Mazzola; Nicole L. Solimini; Prafulla C. Gokhale; Ping Chi; Alice P. Chen; Mark Agulnik; Melissa Burgess; Scott M. Schuetze; Neeta Somaiah; Brian A. Van Tine; Seth M. Pollack; Gabriel Tinoco; Jonathan Trent; Breelyn A. Wilky; Nicola Bothwick; Benjamin K. Eschle; Vivian Nguyen; Jan H. Beumer; Noushin Rastkari; Shahanawaz Jiwani; Peter I-Fan Wu; Lorraine Pelosof; Matthew L. Hemming; Geoffrey I. Shapiro; George Demetri; Bradley Bernstein; Suzanne George
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An expanded registry of candidate cis-regulatory elements
errNature
IF48.5
err2026-01-07
err0
errOAAI
errJill E. Moore; Henry E. Pratt; Kaili Fan; Nishigandha Phalke; Jonathan Fisher; Shaimae I. Elhajjajy; Gregory Andrews; Mingshi Gao; Nicole Shedd; Yu Fu; Matthew C. Lacadie; Jair Meza; Mansi Khandpekar; Mohit Ganna; Eva Choudhury; Ross Swofford; Huong Phan; Christian C. Ramirez; Maxwell Campbell; Mary Likhite; Nina P. Farrell; Annika K. Weimer; Anusri Pampari; Vivekanandan Ramalingam; Fairlie Reese; Beatrice Borsari; Xuezhu Yu; Eve Wattenberg; Marina Ruiz-Romero; Milad Razavi-Mohseni; Jinrui Xu; Timur Galeev; Andres Colubri; Michael A. Beer; Roderic Guigó; Mark B. Gerstein; Jesse M. Engreitz; Mats Ljungman; Timothy E. Reddy; Michael P. Snyder; Charles B. Epstein; Elizabeth Gaskell; Bradley E. Bernstein; Diane E. Dickel; Axel Visel; Len A. Pennacchio; Ali Mortazavi; Anshul Kundaje; Zhiping Weng
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Preclinical and clinical assessment of chemoradiation after mutant IDH inhibitor treatment in IDH-mutant glioma
err2025-11-01
err0
errOAAI
errShi, Diana; Calvo-Fernandez, Ester; Puliyappadamba, Vinesh; Lanman, Tyler; Cruickshank, Aiden; Prost, Diego; Xiao, Yi; Neumann, Ethan; Gudipelly, Sriram; Clark, Louise; Kaphle, Pranita; Shipman, Tracey; Levitt, Michael; Lin, Mathew; Tsai, Alexander; Lee, Joyce; Simons, Donald; Tyagi, Ethika; Rahman, Rifaquat; De Nguyen, Quang-; Wen, Patrick; Haas-Kogan, Daphne; Yates, Kathleen; Manguso, Robert; Bardeesy, Nabeel; Bernstein, Bradley; Wu, Jingyi; Abdullah, Kalil; Jain, Payal; Tron, Adriana; Touat, Mehdi; Castro, L. Nicolas Gonzalez; Suva, Mario; Kaelin, William; Mcbrayer, Samuel
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In vivo CRISPR screening in head and neck cancer reveals Uchl5 as an immunotherapy target
err2025-09-29
err0
errOAAI
errCong Fu; Robert Saddawi-Konefka; Jordan M. Chinai; Sarah Y. Kim; Ashwin V. Kammula; Jonathan J. Perera; Aiping Jiang; Payal Tiwari; Erin N. Kistler; Shiqi Tang; Sarah M. Luna; Kayla J. Colvin; Juan Dubrot; Seth Anderson; Rachel A. Fetterman; Cun Lan Chuong; Sarah K. Lane-Reticker; Collins K. Cheruiyot; Audrey J. Muscato; Zahra Alipour; Douglas R. Adkins; Gabriel K. Griffin; Bradley E. Bernstein; Ann Marie Egloff; Kathleen B. Yates; Rebecca D. Chernock; J. Silvio Gutkind; Ravindra Uppaluri; Robert T. Manguso
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Loss of NOTCH2 creates a TRIM28-dependent vulnerability in small cell lung cancer
err2025-08-26
err0
PREAI
errDeli Hong; Ying Lyu; Richa Nayak; Justin S. Becker; Matthew A. Booker; Keita Masuzawa; Zoe Devos; Tianchu Wang; Shin Saito; Qi Liu; Yixiang Li; Zhaorong Li; Eric H. Knelson; Tran Thai; Leslie Duplaquet; Yasmin N. Laimon; Gabriel Roberti De Oliveira; Sabina Signoretti; John G. Doench; David A. Barbie; Michael Y. Tolystorukov; Jun Qi; Bradley E. Bernstein; Yejing Ge; Matthew G. Oser
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The Somatic Mosaicism across Human Tissues Network
errNature
IF48.5
err2025-07-02
err0
PREAI
errTim H. H. Coorens; Ji Won Oh; Yujin Angelina Choi; Nam Seop Lim; Boxun Zhao; Adam Voshall; Alexej Abyzov; Lucinda Antonacci-Fulton; Samuel Aparicio; Kristin G. Ardlie; Thomas J. Bell; James T. Bennett; Bradley E. Bernstein; Thomas G. Blanchard; Alan P. Boyle; Jason D. Buenrostro; Kathleen H. Burns; Fei Chen; Rui Chen; Sangita Choudhury; Harsha V. Doddapaneni; Evan E. Eichler; Gilad D. Evrony; Melissa A. Faith; Thomas G. Fazzio; Robert S. Fulton; Manuel Garber; Nils Gehlenborg; Soren Germer; Gad Getz; Richard A. Gibbs; Raquel G. Hernandez; Fulai Jin; Jan O. Korbel; Dan A. Landau; Heather A. Lawson; Niall J. Lennon; Heng Li; Yan Li; Po-Ru Loh; Gabor Marth; Michael J. McConnell; Ryan E. Mills; Stephen B. Montgomery; Pradeep Natarajan; Peter J. Park; Rahul Satija; Fritz J. Sedlazeck; Diane D. Shao; Hui Shen; Andrew B. Stergachis; Hunter R. Underhill; Alexander E. Urban; Melissa W. VonDran; Christopher A. Walsh; Ting Wang; Tao P. Wu; Chenghang Zong; Eunjung Alice Lee; Flora M. Vaccarino
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The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles ( vol 24 , 79 , 2023)
err2025-02-13
err0
errOAAI
errSchreiber, Jacob Matthew; Boix, Carles A.; Lee, Jin Wook; Li, Hongyang; Guan, Yuanfang; Chang, Chun-Chieh; Chang, Jen-Chien; Hawkins-Hooker, Alex; Schoelkopf, Bernhard; Schweikert, Gabriele; Carulla, Mateo Rojas; Canakoglu, Arif; Guzzo, Francesco; Nanni, Luca; Masseroli, Marco; Carman, Mark James; Pinoli, Pietro; Hong, Chenyang; Yip, Kevin Y.; Spence, Jefrey P.; Batra, Sanjit Singh; Song, Yun S.; Mahony, Shaun; Zhang, Zheng; Tan, Wuwei; Shen, Yang; Sun, Yuanfei; Shi, Minyi; Adrian, Jessika; Sandstrom, Richard S.; Farrell, Nina P.; Halow, Jessica M.; Lee, Kristen; Jiang, Lixia; Yang, Xinqiong; Epstein, Charles B.; Strattan, J. Seth; Bernstein, Bradley E.; Snyder, Michael P.; Kellis, Manolis; Noble, William S.; Kundaje, Anshul Bharat; ENCODE Imputat Challenge Participants
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Evolving cell states and oncogenic drivers during the progression of IDH-mutant gliomas
err2024-11-21
err0
PREAI
errWu, Jingyi; Castro, L. Nicolas Gonzalez; Battaglia, Sofia; El Farran, Chadi A.; D'Antonio, Joshua P.; Miller, Tyler E.; Suva, Mario L.; Bernstein, Bradley E.
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A SINGLE-CELL MULTIMODAL ANALYSIS OF IDH-MUTANT GLIOMAS UNCOVERS SHIFT FROM EPIGENETIC TO GENETIC DRIVERS WITH TUMOR PROGRESSION
err2024-10-17
err0
PREAI
errCastro, L. Gonzalez; Wu, J.; Battaglia, S.; El Farran, C.; D'Antonio, J.; Miller, T.; Suva, M.; Bernstein, B.
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An autoimmune transcriptional circuit drives FOXP3+ regulatory T cell dysfunction
err2024-08-28
err2
PREAI
errSumida, Tomokazu S.; Lincoln, Matthew R.; He, Liang; Park, Yongjin; Ota, Mineto; Oguchi, Akiko; Son, Raku; Alice, Y., I; Stillwell, Helen A.; Leissa, Greta A.; Fujio, Keishi; Murakawa, Yasuhiro; Kulminski, Alexander M.; Epstein, Charles B.; Bernstein, Bradley E.; Kellis, Manolis; Hafler, David A.
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Dissection of a CTCF topological boundary uncovers principles of enhancer-oncogene regulation
err2024-04-01
err4
errOAAI
errKim, Kyung Lock; Rahme, Gilbert J.; Goel, Viraat Y.; El Farran, Chadi A.; Hansen, Anders S.; Bernstein, Bradley E.
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Epigenetic profiling reveals key genes and cis-regulatory networks specific to human parathyroids
err2024-03-07
err1
errOAAI
errJung, Youngsook Lucy; Zhao, Wenping; Li, Ian; Jain, Dhawal; Epstein, Charles B.; Bernstein, Bradley E.; Parangi, Sareh; Sherwood, Richard; Robinson-Cohen, Cassianne; Hsu, Yi-Hsiang; Park, Peter J.; Mannstadt, Michael
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Modeling epigenetic lesions that cause gliomas
err2024-03-04
err0
PREAI
errRahme, Gilbert J.; Javed, Nauman M.; Puorro, Kaitlyn L.; Xin, Shouhui; Hovestadt, Volker; Johnstone, Sarah E.; Bernstein, Bradley E.
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Exposure of iPSC-derived human microglia to brain substrates enables the generation and manipulation of diverse transcriptional states in vitro
err2023-07-27
err34
errOAAI
errDolan, Michael-John; Therrien, Martine; Jereb, Sasa; Kamath, Tushar; Gazestani, Vahid; Atkeson, Trevor; Marsh, Samuel E. E.; Goeva, Aleksandrina; Lojek, Neal M. M.; Murphy, Sarah; White, Cassandra M. M.; Joung, Julia; Liu, Bingxu; Limone, Francesco; Eggan, Kevin; Hacohen, Nir; Bernstein, Bradley E. E.; Glass, Christopher K. K.; Leinonen, Ville; Blurton-Jones, Mathew; Zhang, Feng; Epstein, Charles B. B.; Macosko, Evan Z. Z.; Stevens, Beth
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Impact of supraphysiologic MDM2 expression on chromatin networks and therapeutic responses in sarcoma
err2023-07-01
err3
errOAAI
errBevill, Samantha M.; Casani-Galdon, Salvador; El Farran, Chadi A.; Cytrynbaum, Eli G.; Macias, Kevin A.; Oldeman, Sylvie E.; Oliveira, Kayla J.; Moore, Molly M.; Hegazi, Esmat; Adriaens, Carmen; Najm, Fadi J.; Demetri, George D.; Cohen, Sonia; Mullen, John T.; Riggi, Nicolo; Johnstone, Sarah E.; Bernstein, Bradley E.
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Integrative dissection of gene regulatory elements at base resolution
err2023-06-01
err4
errOAAI
errChen, Zeyu; Javed, Nauman; Moore, Molly; Wu, Jingyi; Sun, Gary; Vinyard, Michael; Collins, Alejandro; Pinello, Luca; Najm, Fadi J.; Bernstein, Bradley E.
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The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles
err2023-04-18
err7
errOAAI
errSchreiber, Jacob; Boix, Carles; Lee, Jin Wook; Li, Hongyang; Guan, Yuanfang; Chang, Chun-Chieh; Chang, Jen-Chien; Hawkins-Hooker, Alex; Scholkopf, Bernhard; Schweikert, Gabriele; Carulla, Mateo Rojas; Canakoglu, Arif; Guzzo, Francesco; Nanni, Luca; Masseroli, Marco; Carman, Mark James; Pinoli, Pietro; Hong, Chenyang; Yip, Kevin Y.; Spence, Jeffrey P.; Batra, Sanjit Singh; Song, Yun S.; Mahony, Shaun; Zhang, Zheng; Tan, Wuwei; Shen, Yang; Sun, Yuanfei; Shi, Minyi; Adrian, Jessika; Sandstrom, Richard; Farrell, Nina; Halow, Jessica; Lee, Kristen; Jiang, Lixia; Yang, Xinqiong; Epstein, Charles; Strattan, J. Seth; Bernstein, Bradley; Snyder, Michael; Kellis, Manolis; Stafford, William; Kundaje, Anshul
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Modeling epigenetic lesions that cause gliomas
err2023-04-04
err0
PREAI
errRahme, Gilbert J.; Javed, Nauman M.; Puorro, Kaitlyn L.; Xin, Shouhui; Hovestadt, Volker; Johnstone, Sarah E.; Bernstein, Bradley E.
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Mammalian Polycomb-Like Pcl2/Mtf2 Is a Novel Regulatory Component of PRC2 That Can Differentially Modulate Polycomb Activity both at the Hox Gene Cluster and at Cdkn2a Genes
err2023-03-20
err75
errOAAI
errLi, Xiangzhi; Isono, Kyo-ichi; Yamada, Daisuke; Endo, Takaho A.; Endoh, Mitsuhiro; Shinga, Jun; Mizutani-Koseki, Yoko; Otte, Arie P.; Casanova, Miguel; Kitamura, Hiroshi; Kamijo, Takehiko; Sharif, Jafar; Ohara, Osamu; Toyada, Tetsuro; Bernstein, Bradley E.; Brockdorff, Neil; Koseki, Haruhiko
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Report Single-cell RNA sequencing identifies a paracrine interaction that may drive oncogenic notch signaling in human adenoid cystic carcinoma
err2022-11-01
err12
errOAAI
errParikh, Anuraag S.; Wizel, Avishai; Davis, Daniel; Lefranc-Torres, Armida; Rodarte-Rascon, Alejandro I.; Miller, Lauren E.; Emerick, Kevin S.; Varvares, Mark A.; Deschler, Daniel G.; Faquin, William C.; Aster, Jon C.; Lin, Derrick T.; Bernstein, Bradley E.; Drier, Yotam; Puram, Sidharth V.
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