Not logged in Bayesian multi-cell type models for the analysis of complex immune cell populations with application to ovarian cancer Sakitis, Chase J.; Laborde, Jose; Wrobel, Julia; Soupir, Alex C.; Colin-Leitzinger, Christelle M.; Bitler, Benjamin G.; Townsend, Mary K.; Lawson, Andrew B.; Schildkraut, Joellen M.; Tworoger, Shelley S.; Terry, Kathryn L.; Peres, Lauren C.; Fridley, Brooke L. Share Save
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FGD1 splice variant as a novel biomarker for inferior clinical outcomes and development of brain and bone metastasis in clear cell renal cell carcinoma Soupir, Alex; Obermayer, Alyssa; Avasthi, Kapil; Kim, Youngchul; Miller, Justin; Hayes, Mitchell; Abreu, Nicholas; Elias, Roy; Singla, Nirmish; Churchman, Michele; Grass, Daniel; Tarhini, Ahmad; Ramos-Echevarria, Paola; Zea, Kelly; Singer, Eric A.; Kern, Sean; Zakharia, Yousef; Viscuse, Paul; Hensley, Patrick; Wang, Liang; Shaw, Timothy; Manley, Brandon Share Save
Genomic, transcriptomic, and immunogenomic landscape of over 1300 sarcomas of diverse histology subtypes Soupir, Alex; Ospina, Oscar E.; Hampton, Oliver; Churchman, Michelle; Radmacher, Michael; Hedges, Dale; Mckean, David; Agius, Phaedra; Zeeshan, Saman; Seligson, Nathan D.; Pollock, Raphael; Liebner, David; Chen, James L.; Tinoco, Gabriel; Salhia, Bodour; Mccarter, Martin; Wilky, Breelyn A.; Miller, Benjamin J.; Cavnar, Michael J.; Groundland, John S.; Schneider, Bryan P.; Riedlinger, Gregory; Edge, Stephen B.; Moskaluk, Christopher A.; Cardona, Kenneth; Naqash, Abdul Rafeh; Gonzalez, Ricardo J.; Mullinax, John E.; Joyce, David M.; Binitie, Odion; Douglas Letson, G.; Naghavi, Arash O.; Druta, Mihaela; Reed, Damon R.; Siegel, Erin M.; Teer, Jamie K.; Fridley, Brooke L.; Brohl, Andrew S. Share Save
Increased spatial coupling of integrin and collagen IV in the immunoresistant clear-cell renal-cell carcinoma tumor microenvironment Soupir, Alex C.; Hayes, Mitchell T.; Peak, Taylor C.; Ospina, Oscar; Chakiryan, Nicholas H.; Berglund, Anders E.; Stewart, Paul A.; Nguyen, Jonathan; Segura, Carlos Moran; Francis, Natasha L.; Echevarria, Paola M. Ramos; Chahoud, Jad; Li, Roger; Tsai, Kenneth Y.; Balasi, Jodi A.; Peres, Yamila Caraballo; Dhillon, Jasreman; Martinez, Lindsey A.; Gloria, Warren E.; Schurman, Nathan; Kim, Sean; Gregory, Mark; Mule, James; Fridley, Brooke L.; Manley, Brandon J. Share Save
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Genomic landscape and estimation of immune infiltration of soft tissue sarcoma histology subtypes from the ORIEN network Soupir, Alex C.; Ospina, Oscar E.; Hedges, Dale; Teer, Jamie K.; Radmacher, Michael D.; McKean, David M.; Seligson, Nathan; McCarter, Martin; Wilkey, Breelyn; Riedlinger, Greg; Groundland, John; Miller, Benjamin J.; Schneider, Bryan; Patel, Reema; Rafeh-Naqash, Abdul; Edge, Stephen; Salhia, Bodour; Moskaluk, Chris; Johns, Maggy; Churchman, Michelle L.; Hampton, Oliver; Liebner, David; Fridley, Brooke L.; Brohl, Andrew S. Share Save
Comparison of spatial co-localization measures for studying the tumor immune microenvironment with application to ovarian cancer Fridley, Brooke L.; Soupir, Alex; Wrobel, Julia; Colin-Leitzinger, Christelle; Townsend, Mary K.; Lawson, Andrew B.; Terry, Kathryn L.; Schildkraut, Joellen M.; Tworoger, Shelley S.; Peres, Lauren C. Share Save
Increased spatial coupling of integrin and collagen IV in the immunoresistant clear cell renal cell carcinoma tumor microenvironment Soupir, Alex C.; Hayes, Mitchell T.; Peak, Taylor C.; Ospina, Oscar E.; Chakiryan, Nicholas H.; Berglund, Anders E.; Stewart, Paul A.; Nguyen, Jonathan; Moran-Segura, Carlos M.; Francis, Natasha L.; Ramos-Echevarria, Paola M.; Chahoud, Jad; Li, Roger; Tsai, Kenneth Y.; Balasi, Jodi A.; Caraballo-Perez, Yamila; Dhillon, Jasreman; Martinez, Lindsey A.; Gloria, Warren E.; Schurman, Nathan; Kim, Sean; Gregory, Mark; Mule, James J.; Fridley, Brooke L.; Manley, Brandon J. Share Save
spatialGE: Empowering researchers to study the tumor microenvironment leveraging spatial transcriptomics Ospina, Oscar; Manjarres-Betancur, Roberto; Gonzalez-Calderon, Guillermo; Soupir, Alex C.; Smalley, Inna; Tsai, Kenneth; Markowitz, Joseph; Berglund, Anders; Yu, Xiaoqing; Fridley, Brooke L. Share Save
Novel Use of Circulating Tumor DNA to Identify Muscle-invasive and Non-organ-confined Upper Tract Urothelial Carcinoma Huelster, Heather L.; Gould, Billie; Schiftan, Elizabeth A.; Camperlengo, Lucia; Davaro, Facundo; Rose, Kyle M.; Soupir, Alex C.; Jia, Shidong; Zheng, Tiantian; Sexton, Wade J.; -Sang, Julio Pow; Spiess, Philippe E.; Grass, G. Daniel; Wang, Liang; Wang, Xuefeng; Vosoughi, Aram; Necchi, Andrea; Meeks, Joshua J.; Faltas, Bishoy M.; Du, Pan; Li, Roger Share Save
Proteogenomic, Epigenetic, and Clinical Implications of Recurrent Aberrant Splice Variants in Clear Cell Renal Cell Carcinoma Chang, Andrew; Chakiryan, Nicholas H.; Du, Dongliang; Stewart, Paul A.; Zhang, Yonghong; Tian, Yijun; Soupir, Alex C.; Bowers, Kiah; Fang, Bin; Morganti, Ashley; Teer, Jamie K.; Kim, Youngchul; Spiess, Philippe E.; Chahoud, Jad; Noble, Jerald D.; Putney, Ryan M.; Berglund, Anders E.; Robinson, Timothy J.; Koomen, John M.; Wang, Liang; Manley, Brandon J. Share Save
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