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The Impact of Therapeutic Selective Pressure on the Evolutionary Landscape of Chronic Lymphocytic Leukemia Karisani, Negin; Sud, Amit; Li, Liang; Gohil, Satyen; Schlueter-Kuck, Kristy; Rassenti, Laura; Tran, Tuan N.; Cheung, Leo Wang-Kit; Szafer-Glusman, Iliana Edith; Dean, James P.; Chen, Guang; Tsuji, Junko; Kay, Neil E.; Rai, Kanti R.; Brown, Jennifer R.; Gribben, John G.; Gribben, John C.; Byrd, John C.; Neuberg, Donna S.; Stewart, Chip; Bozic, Ivana; Kipps, Thomas J.; Getz, Gad; Wu, Catherine J. Share Save
Efficacy of Nivolumab in Pediatric Cancers with High Mutation Burden and Mismatch Repair Deficiency Das, Anirban; Tabori, Uri; Sambira Nahum, Lauren C.; Collins, Natalie B.; Deyell, Rebecca; Dvir, Rina; Faure-Conter, Cecile; Hassall, Timothy E.; Minturn, Jane E.; Edwards, Melissa; Brookes, Elissa; Bianchi, Vanessa; Levine, Adrian; Stone, Simone C.; Sudhaman, Sumedha; Sanchez Ramirez, Santiago; Ercan, Ayse B.; Stengs, Lucie; Chung, Jill; Negm, Logine; Getz, Gad; Maruvka, Yosef E.; Ertl-Wagner, Birgit; Ohashi, Pamela S.; Pugh, Trevor; Hawkins, Cynthia; Bouffet, Eric; Morgenstern, Daniel A. Share Save
A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns (vol 11, 728, 2020) Jiao, Wei; Atwal, Gurnit; Polak, Paz; Karlic, Rosa; Cuppen, Edwin; Danyi, Alexandra; de Ridder, Jeroen; van Herpen, Carla; Lolkema, Martijn P.; Steeghs, Neeltje; Getz, Gad; Morris, Quaid D.; Stein, Lincoln D. Share Save
SINGLE-CELL RNA STUDY OF TRANSCRIPTIONAL ACTIVITIES ASSOCIATED WITH ANAKINRA PROPHYLAXIS AND AXICABTAGENE CILOLEUCEL IN PATIENTS WITH RELAPSED OR REFRACTORY LARGE BCELL LYMPHOMA Yao, Ning; Frigault, Matthew; Wehrli, Marc; Gallagher, Kathleen; Graham, Charlotte; Jacobson, Caron; Shen, Rhine; Filosto, Simone; Budka, Justin; Nyugen-Mau, Sao-Mai; Nater, Jenny; Mattie, Mike; Getz, Gad; Haradhvala, Nicholas; Maus, Marcela Share Save
Clinical Efficacy and Whole-Exome Sequencing of Liquid Biopsies in a Phase IB/II Study of Bazedoxifene and Palbociclib in Advanced Hormone Receptor-Positive Breast Cancer Tsuji, Junko; Li, Tianyu; Grinshpun, Albert; Coorens, Tim; Russo, Douglas; Anderson, Leilani; Rees, Rebecca; Nardone, Agostina; Patterson, Candace; Lennon, Niall J.; Cibulskis, Carrie; Leshchiner, Ignaty; Tayob, Nabihah; Tolaney, Sara M.; Tung, Nadine; McDonnell, Donald P.; Krop, Ian E.; Winer, Eric P.; Stewart, Chip; Getz, Gad; Jeselsohn, Rinath Share Save
Prevalence of monoclonal gammopathies and clinical outcomes in a high-risk US population screened by mass spectrometry: a multicentre cohort study El-Khoury, Habib; Lee, David J.; Alberge, Jean-Baptiste; Redd, Robert; Cea-Curry, Christian J.; Perry, Jacqueline; Barr, Hadley; Murphy, Ciara; Sakrikar, Dhananjay; Barnidge, David; Bustoros, Mark; Leblebjian, Houry; Cowan, Anna; Davis, Maya, I; Amstutz, Julia; Boehner, Cody J.; Lightbody, Elizabeth D.; Sklavenitis-Pistofidis, Romanos; Perkins, Mark C.; Harding, Stephen; Mo, Clifton C.; Kapoor, Prashant; Mikhael, Joseph; Borrello, Ivan M.; Fonseca, Rafael; Weiss, Scott T.; Karlson, Elizabeth; Trippa, Lorenzo; Rebbeck, Timothy R.; Getz, Gad; Marinac, Catherine R.; Ghobrial, Irene M. Share Save
CRISPR SCREEN IDENTIFIES LOSS OF IFNgR SIGNALING AND DOWNSTREAM ADHESION AS A RESISTANCE MECHANISM TO CAR T-CELL CYTOTOXICITY IN SOLID BUT NOT LIQUID TUMORS Larson, Rebecca; Kann, Michael; Bailey, Stefanie; Haradhvala, Nicholas; Stewart, Kai; Bouffard, Amanda; Scarfo, Irene; Leick, Mark; Berger, Trisha; Jan, Max; Joung, Julia; Ouspenskaia, Tamara; Law, Travis; Regev, Aviv; Getz, Gad; Maus, Marcela Share Save
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (vol 11, 4748, 2020) Bailey, Matthew H.; Meyerson, William U.; Dursi, Lewis Jonathan; Wang, Liang-Bo; Dong, Guanlan; Liang, Wen-Wei; Weerasinghe, Amila; Li, Shantao; Li, Yize; Kelso, Sean; Saksena, Gordon; Ellrott, Kyle; Wendl, Michael C.; Wheeler, David A.; Getz, Gad; Simpson, Jared T.; Gerstein, Mark B.; Ding, Li Share Save
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples Bailey, Matthew H.; Meyerson, William U.; Dursi, Lewis Jonathan; Wang, Liang-Bo; Dong, Guanlan; Liang, Wen-Wei; Weerasinghe, Amila; Li, Shantao; Li, Yize; Kelso, Sean; Saksena, Gordon; Ellrott, Kyle; Wendl, Michael C.; Wheeler, David A.; Getz, Gad; Simpson, Jared T.; Gerstein, Mark B.; Ding, Li Share Save
Identification of Somatically Acquired BRCA1/2 Mutations by cfDNA Analysis in Patients with Metastatic Breast Cancer Vidula, Neelima; Dubash, Taronish; Lawrence, Michael S.; Simoneau, Antoine; Niemierko, Andrzej; Blouch, Erica; Nagy, Becky; Roh, Whijae; Chirn, Brian; Reeves, Brittany A.; Malvarosa, Giuliana; Lennerz, Jochen; Isakoff, Steven J.; Juric, Dejan; Micalizzi, Douglas; Wander, Seth; Spring, Laura; Moy, Beverly; Shannon, Kristen; Younger, Jerry; Lanman, Richard; Toner, Mehmet; Iafrate, A. John; Getz, Gad; Zou, Lee; Ellisen, Leif W.; Maheswaran, Shyamala; Haber, Daniel A.; Bardia, Aditya Share Save
Sensitive Detection of Minimal Residual Disease in Patients Treated for Early-Stage Breast Cancer Parsons, Heather A.; Rhoades, Justin; Reed, Sarah C.; Gydush, Gregory; Ram, Priyanka; Exman, Pedro; Xiong, Kan; Lo, Christopher C.; Li, Tianyu; Fleharty, Mark; Kirkner, Gregory J.; Rotem, Denisse; Cohen, Ofir; Yu, Fangyan; Fitarelli-Kiehl, Mariana; Leong, Ka Wai; Hughes, Melissa E.; Rosenberg, Shoshana M.; Collins, Laura C.; Miller, Kathy D.; Blumenstiel, Brendan; Trippa, Lorenzo; Cibulskis, Carrie; Neuberg, Donna S.; DeFelice, Matthew; Freeman, Samuel S.; Lennon, Niall J.; Wagle, Nikhil; Ha, Gavin; Stover, Daniel G.; Choudhury, Atish D.; Getz, Gad; Winer, Eric P.; Meyerson, Matthew; Lin, Nancy U.; Krop, Ian; Love, J. Christopher; Makrigiorgos, G. Mike; Partridge, Ann H.; Mayer, Erica L.; Golub, Todd R.; Adalsteinsson, Viktor A. Share Save
A deep learning system accurately classifies primary and metastatic cancers using passenger mutation patterns Jiao, Wei; Atwal, Gurnit; Polak, Paz; Karlic, Rosa; Cuppen, Edwin; Danyi, Alexandra; de Ridder, Jeroen; van Herpen, Carla; Lolkema, Martijn P.; Steeghs, Neeltje; Getz, Gad; Morris, Quaid; Stein, Lincoln D. Share Save
A community effort to create standards for evaluating tumor subclonal reconstruction Salcedo, Adriana; Tarabichi, Maxime; Espiritu, Shadrielle Melijah G.; Deshwar, Amit G.; David, Matei; Wilson, Nathan M.; Dentro, Stefan; Wintersinger, Jeff A.; Liu, Lydia Y.; Ko, Minjeong; Sivanandan, Srinivasan; Zhang, Hongjiu; Zhu, Kaiyi; Ou Yang, Tai-Hsien; Chilton, John M.; Buchanan, Alex; Lalansingh, Christopher M.; P'ng, Christine; Anghel, Catalina V.; Umar, Imaad; Lo, Bryan; Zou, William; Simpson, Jared T.; Stuart, Joshua M.; Anastassiou, Dimitris; Guan, Yuanfang; Ewing, Adam D.; Ellrott, Kyle; Wedge, David C.; Morris, Quaid; Van Loo, Peter; Boutros, Paul C.; Jha, Alokkumar; Huang, Tanxiao; Yang, Tsun-Po; Peifer, Martin; Sahinalp, Cenk; Malikic, Salem; Vazquez-Garcia, Ignacio; Mustonen, Ville; Yang, Hsih-Te; Lee, Ken-Ray; Ji, Yuan; Sengupta, Subhajit; Rudewicz, Justine; Nikolski, Macha; Schaeverbeke, Quentin; Yuan, Ke; Markowetz, Florian; Macintyre, Geoff; Cmero, Marek; Chaudhary, Belal; Leshchiner, Ignaty; Livitz, Dimitri; Getz, Gad; Loher, Phillipe; Yu, Kaixian; Wang, Wenyi; Zhu, Hongtu Share Save
Genomic Evolutionary Patterns of Leiomyosarcoma and Liposarcoma Amin-Mansour, Ali; George, Suzanne; Sioletic, Stefano; Carter, Scott L.; Rosenberg, Mara; Taylor-Weiner, Amaro; Stewart, Chip; Chevalier, Aaron; Seepo, Sara; Tracy, Adam; Getz, Gad; Hornick, Jason L.; Nucci, Marisa R.; Quade, Bradley; Demetri, George D.; Raut, Chandrajit P.; Garraway, Levi A.; Van Allen, Eliezer M.; Wagner, Andrew J. Share Save
Integrated Molecular Characterization of Testicular Germ Cell Tumors Shen, Hui; Shih, Juliann; Hollern, Daniel P.; Wang, Linghua; Bowlby, Reanne; Tickoo, Satish K.; Thorsson, Vesteinn; Mungall, Andrew J.; Newton, Yulia; Hegde, Apurva M.; Armenia, Joshua; Sanchez-Vega, Francisco; Pluta, John; Pyle, Louise C.; Mehra, Rohit; Reuter, Victor E.; Godoy, Guilherme; Jones, Jeffrey; Shelley, Carl S.; Feldman, Darren R.; Vidal, Daniel O.; Lesse, Davor; Kulis, Tomislav; Carcano, Flavio M.; Leraas, Kristen M.; Lichtenberg, Tara M.; Brooks, Denise; Cherniack, Andrew D.; Cho, Juok; Heiman, David, I; Kasaian, Katayoon; Liu, Minwei; Noble, Michael S.; Xi, Liu; Zhang, Hailei; Zhou, Wanding; ZenKlusen, Jean C.; Hutter, Carolyn M.; Felau, Ina; Zhang, Jiashan; Schultz, Nikolaus; Getz, Gad; Meyerson, Matthew; Stuart, Joshua M.; Akbani, Rehan; Wheeler, David A.; Laird, Peter W.; Nathanson, Katherine L.; Cortessis, Victoria K.; Hoadley, Katherine A. Share Save
Genomic Evolution after Chemoradiotherapy in Anal Squamous Cell Carcinoma Mouw, Kent W.; Cleary, James M.; Reardon, Brendan; Pike, Jonathan; Braunstein, Lior Z.; Kim, Jaegil; Amin-Mansour, Ali; Miao, Diana; Damish, Alexis; Chin, Joanna; Ott, Patrick A.; Fuchs, Charles S.; Martin, Neil E.; Getz, Gad; Carter, Scott; Mamon, Harvey J.; Hornick, Jason L.; Van Allen, Eliezer M.; D'Andrea, Alan D. Share Save
Survival of Del17p CLL Depends on Genomic Complexity and Somatic Mutation Yu, Lijian; Kim, Haesook T.; Kasar, Siddha N.; Benien, Parul; Du, Wei; Hoang, Kevin; Aw, Andrew; Tesar, Bethany; Improgo, Reina; Fernandes, Stacey M.; Radhakrishnan, Saranya; Klitgaard, Josephine L.; Lee, Charles; Getz, Gad; Setlur, Sunita R.; Brown, Jennifer R. Share Save
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Integrative and Comparative Genomic Analysis of HPV-Positive and HPV-Negative Head and Neck Squamous Cell Carcinomas Seiwert, Tanguy Y.; Zuo, Zhixiang; Keck, Michaela K.; Khattri, Arun; Pedamallu, Chandra S.; Stricker, Thomas; Brown, Christopher; Pugh, Trevor J.; Stojanov, Petar; Cho, Juok; Lawrence, Michael S.; Getz, Gad; Braegelmann, Johannes; DeBoer, Rebecca; Weichselbaum, Ralph R.; Langerman, Alexander; Portugal, Louis; Blair, Elizabeth; Stenson, Kerstin; Lingen, Mark W.; Cohen, Ezra E. W.; Vokes, Everett E.; White, Kevin P.; Hammerman, Peter S. Share Save
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