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Analytical validation of a novel multiomic metastatic breast cancer liquid biopsy test that combines ctDNA analysis with CTC HER2-ultralow and ER co-expression, as well as single-cell chromosomal instability Srikrishnan, Raj; Ritchie, Jordan; Cunsolo, Alessandra; Kunihiro, Andrew; Guillory, Brandon; Tin, Sara; Meng, Zhuo; Lam, Ernest T.; Annaldas, Bharat; Schwab, Evan; Dharajiya, Nilesh; Pluard, Timothy; Blankfard, Martin; Bourdon, David Share Save
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Analysis of BRCA2 Copy Number Loss and Genomic Instability in Circulating Tumor Cells from Patients with Metastatic Castration-resistant Prostate Cancer Barnett, Ethan S.; Schultz, Nikolaus; Stopsack, Konrad H.; Lam, Ernest T.; Arfe, Andrea; Lee, Jerry; Zhao, Jimmy L.; Schonhoft, Joseph D.; Carbone, Emily A.; Keegan, Niamh M.; Wibmer, Andreas; Wang, Yipeng; Solit, David B.; Abida, Wassim; Wenstrup, Richard; Scher, Howard I. Share Save
Optical genome mapping for high throughput analysis of repeat expansion disorders Muggli, Martin; Ramandi, Bahar; Miller, Neil; Zhang, Dong; Lam, Ernest; Wang, Jian; Wang, Tom; Lee, Joyce; Pang, Andy; Sadowski, Henry; Hastie, Alex; Oldakowski, Mark Share Save
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Multi-platform discovery of haplotype-resolved structural variation in human genomes Chaisson, Mark J. P.; Sanders, Ashley D.; Zhao, Xuefang; Malhotra, Ankit; Porubsky, David; Rausch, Tobias; Gardner, Eugene J.; Rodriguez, Oscar L.; Guo, Li; Collins, Ryan L.; Fan, Xian; Wen, Jia; Handsaker, Robert E.; Fairley, Susan; Kronenberg, Zev N.; Kong, Xiangmeng; Hormozdiari, Fereydoun; Lee, Dillon; Wenger, Aaron M.; Hastie, Alex R.; Antaki, Danny; Anantharaman, Thomas; Audano, Peter A.; Brand, Harrison; Cantsilieris, Stuart; Cao, Han; Cerveira, Eliza; Chen, Chong; Chen, Xintong; Chin, Chen-Shan; Chong, Zechen; Chuang, Nelson T.; Lambert, Christine C.; Church, Deanna M.; Clarke, Laura; Farrell, Andrew; Flores, Joey; Galeev, Timur; Gorkin, David U.; Gujral, Madhusudan; Guryev, Victor; Heaton, William Haynes; Korlach, Jonas; Kumar, Sushant; Kwon, Jee Young; Lam, Ernest T.; Lee, Jong Eun; Lee, Joyce; Lee, Wan-Ping; Lee, Sau Peng; Li, Shantao; Marks, Patrick; Viaud-Martinez, Karine; Meiers, Sascha; Munson, Katherine M.; Navarro, Fabio C. P.; Nelson, Bradley J.; Nodzak, Conor; Noor, Amina; Kyriazopoulou-Panagiotopoulou, Sofia; Pang, Andy W. C.; Qiu, Yunjiang; Rosanio, Gabriel; Ryan, Mallory; Stuetz, Adrian; Spierings, Diana C. J.; Ward, Alistair; Welch, AnneMarie E.; Xiao, Ming; Xu, Wei; Zhang, Chengsheng; Zhu, Qihui; Zheng-Bradley, Xiangqun; Lowy, Ernesto; Yakneen, Sergei; McCarroll, Steven; Jun, Goo; Ding, Li; Koh, Chong Lek; Ren, Bing; Flicek, Paul; Chen, Ken; Gerstein, Mark B.; Kwok, Pui-Yan; Lansdorp, Peter M.; Marth, Gabor T.; Sebat, Jonathan; Shi, Xinghua; Bashir, Ali; Ye, Kai; Devine, Scott E.; Talkowski, Michael E.; Mills, Ryan E.; Marschall, Tobias; Korbel, Jan O.; Eichler, Evan E.; Lee, Charles Share Save
Long-read single-molecule maps of the functional methylome Sharim, Hila; Grunwald, Assaf; Gabrieli, Tslil; Michaeli, Yael; Margalit, Sapir; Torchinsky, Dmitry; Arielly, Rani; Nifker, Gil; Juhasz, Matyas; Gularek, Felix; Almalvez, Miguel; Dufault, Brandon; Sen Chandra, Sreetama; Liu, Alexander; Bhattacharya, Surajit; Chen, Yi-Wen; Vilain, Eric; Wagner, Kathryn R.; Pevsner, Jonathan; Reifenberger, Jeff; Lam, Ernest T.; Hastie, Alex R.; Cao, Han; Barseghyan, Hayk; Weinhold, Elmar; Ebenstein, Yuval Share Save
Genome maps across 26 human populations reveal population-specific patterns of structural variation Levy-Sakin, Michal; Pastor, Steven; Mostovoy, Yulia; Li, Le; Leung, Alden K. Y.; McCaffrey, Jennifer; Young, Eleanor; Lam, Ernest T.; Hastie, Alex R.; Wong, Karen H. Y.; Chung, Claire Y. L.; Ma, Walfred; Sibert, Justin; Rajagopalan, Ramakrishnan; Jin, Nana; Chow, Eugene Y. C.; Chu, Catherine; Poon, Annie; Lin, Chin; Naguib, Ahmed; Wang, Wei-Ping; Cao, Han; Chan, Ting-Fung; Yip, Kevin Y.; Xiao, Ming; Kwok, Pui-Yan Share Save
OMSV enables accurate and comprehensive identification of large structural variations from nanochannel-based single-molecule optical maps Li, Le; Leung, Alden King-Yung; Kwok, Tsz-Piu; Lai, Yvonne Y. Y.; Pang, Iris K.; Chung, Grace Tin-Yun; Mak, Angel C. Y.; Poon, Annie; Chu, Catherine; Li, Menglu; Wu, Jacob J. K.; Lam, Ernest T.; Cao, Han; Lin, Chin; Sibert, Justin; Yiu, Siu-Ming; Xiao, Ming; Lo, Kwok-Wai; Kwok, Pui-Yan; Chan, Ting-Fung; Yip, Kevin Y. Share Save
Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome Bickhart, Derek M.; Rosen, Benjamin D.; Koren, Sergey; Sayre, Brian L.; Hastie, Alex R.; Chan, Saki; Lee, Joyce; Lam, Ernest T.; Liachko, Ivan; Sullivan, Shawn T.; Burton, Joshua N.; Huson, Heather J.; Nystrom, John C.; Kelley, Christy M.; Hutchison, Jana L.; Zhou, Yang; Sun, Jiajie; Crisa, Alessandra; de Leon, F. Abel Ponce; Schwartz, John C.; Hammond, John A.; Waldbieser, Geoffrey C.; Schroeder, Steven G.; Liu, George E.; Dunham, Maitreya J.; Shendure, Jay; Sonstegard, Tad S.; Phillippy, Adam M.; Van Tassell, Curtis P.; Smith, Timothy P. L. Share Save
A hybrid approach for de novo human genome sequence assembly and phasing Mostovoy, Yulia; Levy-Sakin, Michal; Lam, Jessica; Lam, Ernest T.; Hastie, Alex R.; Marks, Patrick; Lee, Joyce; Chu, Catherine; Lin, Chin; Dzakula, Zeljko; Cao, Han; Schlebusch, Stephen A.; Giorda, Kristina; Schnall-Levin, Michael; Wall, Jeffrey D.; Kwok, Pui-Yan Share Save
Genome assembly and geospatial phylogenomics of the bed bug Cimex lectularius Rosenfeld, Jeffrey A.; Reeves, Darryl; Brugler, Mercer R.; Narechania, Apurva; Simon, Sabrina; Durrett, Russell; Foox, Jonathan; Shianna, Kevin; Schatz, Michael C.; Gandara, Jorge; Afshinnekoo, Ebrahim; Lam, Ernest T.; Hastie, Alex R.; Chan, Saki; Cao, Han; Saghbini, Michael; Kentsis, Alex; Planet, Paul J.; Kholodovych, Vladyslav; Tessler, Michael; Baker, Richard; DeSalle, Rob; Sorkin, Louis N.; Kolokotronis, Sergios-Orestis; Siddall, Mark E.; Amato, George; Mason, Christopher E. Share Save
Genome-Wide Structural Variation Detection by Genome Mapping on Nanochannel Arrays Mak, Angel C. Y.; Lai, Yvonne Y. Y.; Lam, Ernest T.; Kwok, Tsz-Piu; Leung, Alden K. Y.; Poon, Annie; Mostovoy, Yulia; Hastie, Alex R.; Stedman, William; Anantharaman, Thomas; Andrews, Warren; Zhou, Xiang; Pang, Andy W. C.; Dai, Heng; Chu, Catherine; Lin, Chin; Wu, Jacob J. K.; Li, Catherine M. L.; Li, Jing-Woei; Yim, Aldrin K. Y.; Chan, Saki; Sibert, Justin; Dzakula, Zeljko; Cao, Han; Yiu, Siu-Ming; Chan, Ting-Fung; Yip, Kevin Y.; Xiao, Ming; Kwok, Pui-Yan Share Save
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Mitochondrial DNA Heteroplasmy Associations With Neurosensory and Mobility Function in Elderly Adults Tranah, Gregory J.; Yaffe, Kristine; Katzman, Shana M.; Lam, Ernest T.; Pawlikowska, Ludmila; Kwok, Pui-Yan; Schork, Nicholas J.; Manini, Todd M.; Kritchevsky, Stephen; Thomas, Fridtjof; Newman, Anne B.; Harris, Tamara B.; Coleman, Anne L.; Gorin, Michael B.; Helzner, Elizabeth P.; Rowbotham, Michael C.; Browner, Warren S.; Cummings, Steven R. Share Save
Assessing structural variation in a personal genome-towards a human reference diploid genome English, Adam C.; Salerno, William J.; Hampton, Oliver A.; Gonzaga-Jauregui, Claudia; Ambreth, Shruthi; Ritter, Deborah I.; Beck, Christine R.; Davis, Caleb F.; Dahdouli, Mahmoud; Ma, Singer; Carroll, Andrew; Veeraraghavan, Narayanan; Bruestle, Jeremy; Drees, Becky; Hastie, Alex; Lam, Ernest T.; White, Simon; Mishra, Pamela; Wang, Min; Han, Yi; Zhang, Feng; Stankiewicz, Pawel; Wheeler, David A.; Reid, Jeffrey G.; Muzny, Donna M.; Rogers, Jeffrey; Sabo, Aniko; Worley, Kim C.; Lupski, James R.; Boerwinkle, Eric; Gibbs, Richard A. Share Save