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Rommie E. Amaro

University of California System

63H-index
542Paper Count
1.5WCitation Count
Published Papers 119
Publication Date
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ReVesicle: Curation and Equilibration of Lipid Vesicles for Mesoscale Simulations
errJournal of Chemical Theory and Computation
IF5.5
err2026-03-01
err0
PREAI
errCastelli, Matteo; Casalino, Lorenzo; Amaro, Rommie E.
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Revealing the Impact of pH on Lipase Structure and Surface Propensity at the Air-Water Interface and in Aqueous Aerosols
errJOURNAL OF PHYSICAL CHEMISTRY LETTERS
IF4.6
err2026-01-01
err0
PREAI
errRoy, Tarun Kumar; Rubio, Patiemma; Cruz, Jenille; Wauer, Nicholas A.; Hettiarachchi, Eshani; Amaro, Rommie E.; Grassian, Vicki H.
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In silico Drug Discovery: Bridging the Gaps in Preclinical Translation
errDrug Discovery Today
IF7.5
err2025-12-03
err0
PREAI
errSarine Markossian; Hannah M. Baskir; Abigail C. Grossman; Suchismita Chandran; Shyam Rele; Matthew D. Hall; Rommie E. Amaro; Alexander Tropsha; Alexey V. Zakharov
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Understanding Aerosol-Mediated Disease Transmission
errACS CENTRAL SCIENCE
IF10.4
err2025-12-01
err0
PREAI
errDommer, Abigail C.; Amaro, Rommie E.; Prather, Kimberly A.
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Discovery of Tetrahydroisoquinoline-Based SARS-CoV-2 Helicase Inhibitors with Iterative, Deep Learning-Enhanced Virtual Screening
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2025-12-01
err0
PREAI
errCastaneda-Leautaud, Alma C.; Srivastava, Ambuj; Kim, Eunjung; Chung, Donghoon; Bannister, Thomas D.; Amaro, Rommie E.
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A split luciferase system for studying coronavirus Mpro dimerization in vitro and in living cells
errJournal of Biological Chemistry
IF3.9
err2025-11-04
err0
errOAAI
errRenee Delgado; Jyoti Vishwakarma; Javier O. Sanlley Hernandez; Megan Tansiongco; Ashley Cuell; Agnieszka Dabrowska; Rahul Basu; Philipp A.M. Schmidpeter; You Hu; Susan E. Tsutakawa; Christina B. Cooley; Rommie E. Amaro; Reuben S. Harris
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Development of a Real-Time Fluorescence-Based Deamination Assay and Identification of Inhibitors of Human Cytidine Deaminase
errACS Chemical Biology
IF3.8
err2025-10-22
err0
PREAI
errRamkumar Moorthy; Michael J. Grillo; Jordan W. Baur; Sydney A. Schmidt; Kellan T. Passow; Özlem Demir; Jian Tang; Margaret E. Olson; Rommie E. Amaro; Daniel A. Harki
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Optimal message passing for molecular prediction is simple, attentive and spatial
errDIGITAL DISCOVERY
IF5.6
err2025-10-01
err0
errOAAI
errCastaneda-Leautaud, Alma C.; Amaro, Rommie E.
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Markovian State Models uncover Casein Kinase 1 dynamics that govern circadian period
errBiophysical Journal
IF3.1
err2025-09-18
err0
errOAAI
errClarisse Gravina Ricci; Jonathan M. Philpott; Megan R. Torgrimson; Alfred M. Freeberg; Rajesh Narasimamurthy; Emilia Pécora de Barros; Rommie Amaro; David M. Virshup; J.Andrew McCammon; Carrie L. Partch
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Nootropic Benzothiazoles Promote Dendritic Spine Formation by Targeting Fascin-1
errJournal of Biological Chemistry
IF3.9
err2025-08-08
err0
errOAAI
errAashish Shivkumar; Kyle R. Berg; Kevin C. Sibucao; Geoffray Leriche; Lara E. Dozier; Carla A. Espinoza; Gentry N. Patrick; Zied Gaieb; Christian Seitz; Rommie E. Amaro; Hyun-Hee Park; Hyang-Sook Hoe; Jacob Wozniak; David J. Gonzalez; Saptarshi Sinha; Pradipta Ghosh; Jerry Yang
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errSave
All-atom virus simulations to tackle airborne disease
errCURRENT OPINION IN STRUCTURAL BIOLOGY
IF7
err2025-06-01
err0
errOAAI
errDommer, Abigail C.; Wauer, Nicholas A.; Marrink, Siewert J.; Amaro, Rommie E.
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errSave
Multiple steps of dynein activation by Lis1 visualized by cryo-EM
errNATURE STRUCTURAL & MOLECULAR BIOLOGY
IF10.1
err2025-05-23
err0
errOAAI
errKendrick, Agnieszka A.; Nguyen, Kendrick H. V.; Ma, Wen; Karasmanis, Eva P.; Amaro, Rommie E.; Reck-Peterson, Samara L.; Leschziner, Andres E.
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Targeting N-Myc in neuroblastoma with selective Aurora kinase A degraders
errCELL CHEMICAL BIOLOGY
IF7.2
err2025-02-01
err0
errOAAI
errTang, Jian; Moorthy, Ramkumar; Hirsch, Laura E.; Demir, Ozlem; Baker, Zachary D.; Naumann, Jordan A.; Jones, Katherine F. M.; Grillo, Michael J.; Haefner, Ella S.; Shi, Ke; Levy, Michaella J.; Gupta, Harshita B.; Aihara, Hideki; Harris, Reuben S.; Amaro, Rommie E.; Levinson, Nicholas M.; Harki, Daniel A.
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An in vitro platform for the enzymatic characterization of the rhomboid protease RHBDL4
errJOURNAL OF BIOLOGICAL CHEMISTRY
IF3.9
err2025-02-01
err0
errOAAI
errBhaduri, Satarupa; Braza, Mac Kevin E.; Stanchev, Stancho; Tauber, Marina; Al-Bawab, Raghad; Liu, Lawrence J.; Trujillo, Diego F.; Solorio-Kirpichyan, Kristina; Srivastava, Ambuj; Sanlley-Hernandez, Javier; O'Donoghue, Anthony J.; Lemberg, Marius K.; Amaro, Rommie; Strisovsky, Kvido; Neal, Sonya E.
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The Impact of Sugar Conformation on the Single-Stranded DNA Selectivity of APOBEC3A and APOBEC3B Enzymes
errACS CHEMICAL BIOLOGY
IF3.8
err2024-12-16
err0
PREAI
errWyllie, Mackenzie K.; Morris, Clare K.; Moeller, Nicholas H.; Schares, Henry A. M.; Moorthy, Ramkumar; Belica, Christopher A.; Grillo, Michael J.; Demir, Ozlem; Ayoub, Alex M.; Carpenter, Michael A.; Aihara, Hideki; Harris, Reuben S.; Amaro, Rommie E.; Harki, Daniel A.
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Distinct pathways for evolution of enhanced receptor binding and cell entry in SARS-like bat coronaviruses
errPLOS PATHOGENS
IF4.9
err2024-11-15
err0
errOAAI
errTse, Alexandra L.; Acreman, Cory M.; Ricardo-Lax, Inna; Berrigan, Jacob; Lasso, Gorka; Balogun, Toheeb; Kearns, Fiona L.; Casalino, Lorenzo; McClain, Georgia L.; Chandran, Amartya Mudry; Lemeunier, Charlotte; Amaro, Rommie E.; Rice, Charles M.; Jangra, Rohit K.; McLellan, Jason S.; Chandran, Kartik; Miller, Emily Happy
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Advances and Challenges in Milestoning Simulations for Drug-Target Kinetics
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2024-11-07
err1
errOAAI
errOjha, Anupam Anand; Votapka, Lane W.; Amaro, Rommie E.
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Electrophysical cardiac remodeling at the molecular level: Insights into ryanodine receptor activation and calcium-induced calcium release from a stochastic explicit-particle model
errBIOPHYSICAL JOURNAL
IF3.1
err2024-11-01
err0
PREAI
errHirakis, Sophia P.; Bartol, Thomas M.; Autin, Ludovic; Amaro, Rommie E.; Sejnowski, Terrence J.
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NetSci: A Library for High Performance Biomolecular Simulation Network Analysis Computation
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2024-10-04
err1
PREAI
errStokely, Andrew M.; Votapka, Lane W.; Hock, Marcus T.; Teitgen, Abigail E.; Mccammon, J. Andrew; Mcculloch, Andrew D.; Amaro, Rommie E.
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Breaking Down the Bottlebrush: Atomically Detailed Structural Dynamics of Mucins
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2024-09-27
err0
errOAAI
errKearns, Fiona L.; Rosenfeld, Mia A.; Amaro, Rommie E.
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Research Directions

No research directions
Co-authors
Cooperation Journals
J
John R. Yates
H-index: 188 · Papers: 1.5K
Y
Yoshua Bengio
H-index: 183 · Papers: 1.3K
I
Ian A. Wilson
H-index: 179 · Papers: 1.7K
D
Dennis R. Burton
H-index: 172 · Papers: 800
C
Charles M. Rice
H-index: 166 · Papers: 718
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