Not logged in MITI minimum information guidelines for highly multiplexed tissue images Schapiro, Denis; Yapp, Clarence; Sokolov, Artem; Reynolds, Sheila M.; Chen, Yu-An; Sudar, Damir; Xie, Yubin; Muhlich, Jeremy; Arias-Camison, Raquel; Arena, Sarah; Taylor, Adam J.; Nikolov, Milen; Tyler, Madison; Lin, Jia-Ren; Burlingame, Erik A.; Chang, Young H.; Farhi, Samouil L.; Thorsson, Vesteinn; Venkatamohan, Nithya; Drewes, Julia L.; Pe'er, Dana; Gutman, David A.; Herrmann, Markus D.; Gehlenborg, Nils; Bankhead, Peter; Roland, Joseph T.; Herndon, John M.; Snyder, Michael P.; Angelo, Michael; Nolan, Garry; Swedlow, Jason R.; Schultz, Nikolaus; Merrick, Daniel T.; Mazzili, Sarah A.; Cerami, Ethan; Rodig, Scott J.; Santagata, Sandro; Sorger, Peter K. Share Save
ROUTINE USE OF COMPREHENSIVE GENOMIC PROFILING TO ASSESS TUMOR MUTATIONAL BURDEN ACROSS A COMMUNITY HEALTH SYSTEM Bifulco, Carlo; Weerasinghe, Roshanthi; Bapat, Bela; Dowdell, Alexa; Pindikuri, Shwetha; Reynolds, Sheila; Biery, Nancy; Ball, David; Campbell, Mary; Ward, Thomas; Stein, Alisha; Schroeder, Brock; Eberhard, David; Piening, Brian Share Save
Discovery of driver non-coding splice-site-creating mutations in cancer Cao, Song; Zhou, Daniel Cui; Oh, Clara; Jayasinghe, Reyka G.; Zhao, Yanyan; Yoon, Christopher J.; Wyczalkowski, Matthew A.; Bailey, Matthew H.; Tsou, Terrence; Gao, Qingsong; Malone, Andrew; Reynolds, Sheila; Shmulevich, Ilya; Wendl, Michael C.; Chen, Feng; Ding, Li Share Save
Before and After: Comparison of Legacy and Harmonized TCGA Genomic Data Commons' Data Gao, Galen F.; Parker, Joel S.; Reynolds, Sheila M.; Silva, Tiago C.; Wang, Liang-Bo; Zhou, Wanding; Akbani, Rehan; Bailey, Matthew; Balu, Saianand; Berman, Benjamin P.; Brooks, Denise; Chen, Hu; Cherniack, Andrew D.; Demchok, John A.; Ding, Li; Felau, Ina; Gaheen, Sharon; Gerhard, Daniela S.; Heiman, David, I; Hernandez, Kyle M.; Hoadley, Katherine A.; Jayasinghe, Reyka; Kemal, Anab; Knijnenburg, Theo A.; Laird, Peter W.; Mensah, Michael K. A.; Mungall, Andrew J.; Robertson, A. Gordon; Shen, Hui; Tarnuzzer, Roy; Wang, Zhining; Wyczalkowski, Matthew; Yang, Liming; Zenklusen, Jean C.; Zhang, Zhenyu; Liang, Han; Noble, Michael S. Share Save
Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes Xue, Zhuyi; Warren, Rene L.; Gibb, Ewan A.; MacMillan, Daniel; Wong, Johnathan; Chiu, Readman; Hammond, S. Austin; Yang, Chen; Nip, Ka Ming; Ennis, Catherine A.; Hahn, Abigail; Reynolds, Sheila; Birol, Inanc Share Save
Regulatory germline variants in 10,389 adult cancers Huang, Kuan-lin; Weerasinghe, Amila; Wu, Yige; Liang, Wen-wei; Mashl, R. Jay; Reynolds, Sheila; Houlahan, Kathleen E.; Oak, Ninad; Lazar, Alexander J.; Wendel, Michael C.; Khurana, Ekta; Plon, Sharon; Chen, Feng; Gerstein, Mark; Shmulevich, Ilya; Ding, Li Share Save
The Immune Landscape of Cancer Thorsson, Vesteinn; Gibbs, David L.; Brown, Scott D.; Wolf, Denise; Bortone, Dante S.; Yang, Tai-Hsien Ou; Porta-Pardo, Eduard; Gao, Galen F.; Plaisier, Christopher L.; Eddy, James A.; Ziv, Elad; Culhane, Aedin C.; Paull, Evan O.; Sivakumar, I. K. Ashok; Gentles, Andrew J.; Malhotra, Raunaq; Farshidfar, Farshad; Colaprico, Antonio; Parker, Joel S.; Mose, Lisle E.; Nam Sy Vo; Liu, Jianfang; Liu, Yuexin; Rader, Janet; Dhankani, Varsha; Reynolds, Sheila M.; Bowlby, Reanne; Califano, Andrea; Cherniack, Andrew D.; Anastassiou, Dimitris; Bedognetti, Davide; Rao, Arvind; Chen, Ken; Krasnitz, Alexander; Hu, Hai; Malta, Tathiane M.; Noushmehr, Houtan; Pedamallu, Chandra Sekhar; Bullman, Susan; Ojesina, Akinyemi I.; Lamb, Andrew; Zhou, Wanding; Shen, Hui; Choueiri, Toni K.; Weinstein, John N.; Guinney, Justin; Saltz, Joel; Holt, Robert A.; Rabkin, Charles E.; Lazar, Alexander J.; Serody, Jonathan S.; Demicco, Elizabeth G.; Disis, Mary L.; Vincent, Benjamin G.; Shmulevich, Llya Share Save
Systematic Analysis of Splice-Site-Creating Mutations in Cancer Jayasinghe, Reyka G.; Cao, Song; Gao, Qingsong; Wendl, Michael C.; Vo, Nam Sy; Reynolds, Sheila M.; Zhao, Yanyan; Climente-Gonzalez, Hector; Chai, Shengjie; Wang, Fang; Varghese, Rajees; Huang, Mo; Liang, Wen-Wei; Wyczalkowski, Matthew A.; Sengupta, Sohini; Li, Zhi; Payne, Samuel H.; Fenyo, David; Miner, Jeffrey H.; Walter, Matthew J.; Vincent, Benjamin; Eyras, Eduardo; Chen, Ken; Shmulevich, Ilya; Chen, Feng; Ding, Li Share Save
Driver Fusions and Their Implications in the Development and Treatment of Human Cancers Gao, Qingsong; Liang, Wen-Wei; Foltz, Steven M.; Mutharasu, Gnanavel; Jayasinghe, Reyka G.; Cao, Song; Liao, Wen-Wei; Reynolds, Sheila M.; Wyczalkowski, Matthew A.; Yao, Lijun; Yu, Lihua; Sun, Sam Q.; Chen, Ken; Lazar, Alexander J.; Fields, Ryan C.; Wendl, Michael C.; Van Tine, Brian A.; Vij, Ravi; Chen, Feng; Nykter, Matti; Shmulevich, Ilya; Ding, Li Share Save
Mapping genetic variations to three-dimensional protein structures to enhance variant interpretation: a proposed framework Glusman, Gustavo; Rose, Peter W.; Prlic, Andreas; Dougherty, Jennifer; Duarte, Jose M.; Hoffman, Andrew S.; Barton, Geoffrey J.; Bendixen, Emoke; Bergquist, Timothy; Bock, Christian; Brunk, Elizabeth; Buljan, Marija; Burley, Stephen K.; Cai, Binghuang; Carter, Hannah; Gao, JianJiong; Godzik, Adam; Heuer, Michael; Hicks, Michael; Hrabe, Thomas; Karchin, Rachel; Leman, Julia Koehler; Lane, Lydie; Masica, David L.; Mooney, Sean D.; Moult, John; Omenn, Gilbert S.; Pearl, Frances; Pejaver, Vikas; Reynolds, Sheila M.; Rokem, Ariel; Schwede, Torsten; Song, Sicheng; Tilgner, Hagen; Valasatava, Yana; Zhang, Yang; Deutsch, Eric W. Share Save
The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research Reynolds, Sheila M.; Miller, Michael; Lee, Phyliss; Leinonen, Kalle; Paquette, Suzanne M.; Rodebaugh, Zack; Hahn, Abigail; Gibbs, David L.; Slagel, Joseph; Longabaugh, William J.; Dhankani, Varsha; Reyes, Madelyn; Pihl, Todd; Backus, Mark; Bookman, Matthew; Deflaux, Nicole; Bingham, Jonathan; Pot, David; Shmulevich, Ilya Share Save
Causal Mechanistic Regulatory Network for Glioblastoma Deciphered Using Systems Genetics Network Analysis Plaisier, Christopher L.; O'Brien, Sofie; Bernard, Brady; Reynolds, Sheila; Simon, Zac; Toledo, Chad M.; Ding, Yu; Reiss, David J.; Paddison, Patrick J.; Baliga, Nitin S. Share Save
Independent and complementary methods for large-scale structural analysis of mammalian chromatin Dennis, Jonathan H.; Fan, Hua-Ying; Reynolds, Sheila M.; Yuan, Guocheng; Meldrim, James C.; Richter, Daniel J.; Peterson, Daniel G.; Rando, Oliver J.; Noble, William S.; Kingston, Robert E. Share Save
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