Not logged in Sources of erroneous sequences and artifact chimeric reads in next generation sequencing of genomic DNA from formalin-fixed paraffin-embedded samples Haile, Simon; Corbett, Richard D.; Bilobram, Steve; Bye, Morgan H.; Kirk, Heather; Pandoh, Pawan; Trinh, Eva; MacLeod, Tina; McDonald, Helen; Bala, Miruna; Miller, Diane; Novik, Karen; Coope, Robin J.; Moore, Richard A.; Zhao, Yongjun; Mungall, Andrew J.; Ma, Yussanne; Holt, Rob A.; Jones, Steven J.; Marra, Marco A. Share Save
Increasing quality, throughput and speed of sample preparation for strand-specific messenger RNA sequencing Haile, Simon; Corbett, Richard D.; MacLeod, Tina; Bilobram, Steve; Smailus, Duane; Tsao, Philip; Kirk, Heather; McDonald, Helen; Pandoh, Pawan; Bala, Miruna; Hirst, Martin; Miller, Diane; Moore, Richard A.; Mungall, Andrew J.; Schein, Jacquie; Coope, Robin J.; Ma, Yussanne; Zhao, Yongjun; Holt, Rob A.; Jones, Steven J.; Marra, Marco A. Share Save
Recurrent genomic rearrangements in primary testicular lymphoma Twa, David D. W.; Mottok, Anja; Chan, Fong Chun; Ben-Neriah, Susana; Woolcock, Bruce W.; Tan, King L.; Mungall, Andrew J.; McDonald, Helen; Zhao, Yongjun; Lim, Raymond S.; Nelson, Brad H.; Milne, Katy; Shah, Sohrab P.; Morin, Ryan D.; Marra, Marco A.; Scott, David W.; Gascoyne, Randy D.; Steidl, Christian Share Save
Complete genomic landscape of a recurring sporadic parathyroid carcinoma Kasaian, Katayoon; Wiseman, Sam M.; Thiessen, Nina; Mungall, Karen L.; Corbett, Richard D.; Qian, Jenny Q.; Nip, Ka Ming; He, Ann; Tse, Kane; Chuah, Eric; Varhol, Richard J.; Pandoh, Pawan; McDonald, Helen; Zeng, Thomas; Tam, Angela; Schein, Jacquie; Birol, Inanc; Mungall, Andrew J.; Moore, Richard A.; Zhao, Yongjun; Hirst, Martin; Marra, Marco A.; Walker, Blair A.; Jones, Steven J. M. Share Save
Use of mutation profiles to refine the classification of endometrial carcinomas McConechy, Melissa K.; Ding, Jiarui; Cheang, Maggie C. U.; Wiegand, Kimberly C.; Senz, Janine; Tone, Alicia A.; Yang, Winnie; Prentice, Leah M.; Tse, Kane; Zeng, Thomas; McDonald, Helen; Schmidt, Amy P.; Mutch, David G.; McAlpine, Jessica N.; Hirst, Martin; Shah, Sohrab P.; Lee, Cheng-Han; Goodfellow, Paul J.; Gilks, C. Blake; Huntsman, David G. Share Save
Alternative expression analysis by RNA sequencing Griffith, Malachi; Griffith, Obi L.; Mwenifumbo, Jill; Goya, Rodrigo; Morrissy, A. Sorana; Morin, Ryan D.; Corbett, Richard; Tang, Michelle J.; Hou, Ying-Chen; Pugh, Trevor J.; Robertson, Gordon; Chittaranjan, Suganthi; Ally, Adrian; Asano, Jennifer K.; Chan, Susanna Y.; Li, Haiyan I.; McDonald, Helen; Teague, Kevin; Zhao, Yongjun; Zeng, Thomas; Delaney, Allen; Hirst, Martin; Morin, Gregg B.; Jones, Steven J. M.; Tai, Isabella T.; Marra, Marco A. Share Save
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A modified polymerase chain reaction-long serial analysis of gene expression protocol identifies novel transcripts in human CD34+ bone marrow cells Zhao, Yun; Raouf, Afshin; Kent, David; Khattra, Jaswinder; Delaney, Allen; Schnerch, Angelique; Asano, Jennifer; McDonald, Helen; Chan, Christina; Jones, Steven; Marra, Marco A.; Eaves, Connie J. Share Save
In-depth characterization of the microRNA transcriptome in a leukemia progression model Kuchenbauer, Florian; Morin, Ryan D.; Argiropoulos, Bob; Petriv, Oleh I.; Griffith, Malachi; Heuser, Michael; Yung, Eric; Piper, Jessica; Delaney, Allen; Prabhu, Anna-Liisa; Zhao, Yongjun; McDonald, Helen; Zeng, Thomas; Hirst, Martin; Hansen, Carl L.; Marra, Marco A.; Humphries, R. Keith Share Save
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells Morin, Ryan D.; O'Connor, Michael D.; Griffith, Malachi; Kuchenbauer, Florian; Delaney, Allen; Prabhu, Anna-Liisa; Zhao, Yongjun; McDonald, Helen; Zeng, Thomas; Hirst, Martin; Eaves, Connie J.; Marra, Marco A. Share Save
LongSAGE profiling of nine human embryonic stem cell lines Hirst, Martin; Delaney, Allen; Rogers, Sean A.; Schnerch, Angelique; Persaud, Deryck R.; O'Connor, Michael D.; Zeng, Thomas; Moksa, Michelle; Fichter, Keith; Mah, Diana; Go, Anne; Morin, Ryan D.; Baross, Agnes; Zhao, Yongjun; Khattra, Jaswinder; Prabhu, Anna-Liisa; Pandoh, Pawan; McDonald, Helen; Asano, Jennifer; Dhalla, Noreen; Ma, Kevin; Lee, Stephanie; Ally, Adrian; Chahal, Neil; Menzies, Stephanie; Siddiqui, Asim; Holt, Robert; Jones, Steven; Gerhard, Daniela S.; Thomson, James A.; Eaves, Connie J.; Marra, Marco A. Share Save
Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines Khattra, Jaswinder; Delaney, Allen D.; Zhao, Yongjun; Siddiqui, Asim; Asano, Jennifer; McDonald, Helen; Pandoh, Pawan; Dhalla, Noreen; Prabhu, Anna-liisa; Ma, Kevin; Lee, Stephanie; Ally, Adrian; Tam, Angela; Sa, Danne; Rogers, Sean; Charest, David; Stott, Jeff; Zuyderduyn, Scott; Varhol, Richard; Eaves, Connie; Jones, Steven; Holt, Robert; Hirst, Martin; Hoodless, Pamela A.; Marra, Marco A. Share Save
A mouse atlas of gene expression: Large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells Siddiqui, AS; Khattra, J; Delaney, AD; Zhao, YJ; Astell, C; Asano, J; Babakaiff, R; Barber, S; Beland, J; Bohacec, S; Brown-John, M; Chand, S; Charest, D; Charters, AM; Cullum, R; Dhalla, N; Featherstone, R; Gerhard, DS; Hoffman, B; Holt, RA; Hou, J; Kuo, BYL; Lee, LLC; Lee, S; Leung, D; Ma, K; Matsuo, C; Mayo, M; McDonald, H; Prabhu, AI; Pandoh, P; Riggins, GJ; de Algara, TR; Rupert, JL; Smailus, D; Stott, J; Tsai, M; Varhol, R; Vrljicak, P; Wong, D; Wu, MK; Xie, YY; Yang, G; Zhang, I; Hirst, M; Jones, SJM; Helgason, CD; Simpson, EM; Hoodless, PA; Marra, MA Share Save
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