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SaveECOD: integrating classifications of protein domains from experimental and predicted structures
Schaeffer, R. Dustin; Medvedev, Kirill E.; Andreeva, Antonina; Chuguransky, Sara Rocio; Pinto, Beatriz Lazaro; Zhang, Jing; Cong, Qian; Bateman, Alex; Grishin, Nick, V Share Save The Pfam protein families database: embracing AI/MLPaysan-Lafosse, Typhaine; Andreeva, Antonina; Blum, Matthias; Chuguransky, Sara Rocio; Grego, Tiago; Pinto, Beatriz Lazaro; Salazar, Gustavo A.; Bileschi, Maxwell L.; Llinares-Lopez, Felipe; Meng-Papaxanthos, Laetitia; Colwell, Lucy J.; Grishin, Nick, V; Schaeffer, R. Dustin; Clementel, Damiano; Tosatto, Silvio C. E.; Sonhammer, Erik; Wood, Valerie; Bateman, Alex Share Save Rfam 15: RNA families database in 2025Ontiveros-Palacios, Nancy; Cooke, Emma; Nawrocki, Eric P.; Triebel, Sandra; Marz, Manja; Rivas, Elena; Griffiths-Jones, Sam; Petrov, Anton, I; Bateman, Alex; Sweeney, Blake Share Save A subgroup of light-driven sodium pumps with an additional Schiff base counterionPodoliak, E.; Lamm, G. H. U.; Marin, E.; Schellbach, A. V.; Fedotov, D. A.; Stetsenko, A.; Asido, M.; Maliar, N.; Bourenkov, G.; Balandin, T.; Baeken, C.; Astashkin, R.; Schneider, T. R.; Bateman, A.; Wachtveitl, J.; Schapiro, I.; Busskamp, V.; Guskov, A.; Gordeliy, V.; Alekseev, A.; Kovalev, K. Share Save A STRP-ed definition of Structured Tandem Repeats in ProteinsMonzon, Alexander Miguel; Arrias, Paula Nazarena; Elofsson, Arne; Mier, Pablo; Andrade-Navarro, Miguel A.; Bevilacqua, Martina; Clementel, Damiano; Bateman, Alex; Hirsh, Layla; Fornasari, Maria Silvina; Parisi, Gustavo; Piovesan, Damiano; Kajava, Andrey V.; Tosatto, Silvio C. E. Share Save Share Save GREENER principles for environmentally sustainable computational scienceLannelongue, Loic; Aronson, Hans-Erik G.; Bateman, Alex; Birney, Ewan; Caplan, Talia; Juckes, Martin; McEntyre, Johanna; Morris, Andrew D.; Reilly, Gerry; Inouye, Michael Share Save Share Save Domain shuffling of a highly mutable ligand-binding fold drives adhesin generation across the bacterial kingdomBarringer, Rob; Parnell, Alice E.; Lafita, Aleix; Monzon, Vivian; Back, Catherine R.; Madej, Mariusz; Potempa, Jan; Nobbs, Angela H.; Burston, Steven G.; Bateman, Alex; Race, Paul R. Share Save The Gene Ontology knowledgebase in 2023Aleksander, Suzi A.; Balhoff, James; Carbon, Seth; Cherry, J. Michael; Drabkin, Harold J.; Ebert, Dustin; Feuermann, Marc; Gaudet, Pascale; Harris, Nomi L.; Hill, David P.; Lee, Raymond; Mi, Huaiyu; Moxon, Sierra; Mungall, Christopher J.; Muruganugan, Anushya; Mushayahama, Tremayne; Sternberg, Paul W.; Thomas, Paul D.; Van Auken, Kimberly; Ramsey, Jolene; Siegele, Deborah A.; Chisholm, Rex L.; Fey, Petra; Aspromonte, Maria Cristina; Nugnes, Maria Victoria; Quaglia, Federica; Tosatto, Silvio; Giglio, Michelle; Nadendla, Suvarna; Antonazzo, Giulia; Attrill, Helen; dos Santos, Gil; Marygold, Steven; Strelets, Victor; Tabone, Christopher J.; Thurmond, Jim; Zhou, Pinglei; Ahmed, Saadullah H.; Asanitthong, Praoparn; Luna Buitrago, Diana; Erdol, Meltem N.; Gage, Matthew C.; Ali Kadhum, Mohamed; Li, Kan Yan Chloe; Long, Miao; Michalak, Aleksandra; Pesala, Angeline; Pritazahra, Armalya; Saverimuttu, Shirin C. C.; Su, Renzhi; Thurlow, Kate E.; Lovering, Ruth C.; Logie, Colin; Oliferenko, Snezhana; Blake, Judith; Christie, Karen; Corbani, Lori; Dolan, Mary E.; Sitnikov, Dmitry; Smith, Cynthia; Cuzick, Alayne; Seager, James; Cooper, Laurel; Elser, Justin; Jaiswal, Pankaj; Gupta, Parul; Naithani, Sushma; Lera-Ramirez, Manuel; Rutherford, Kim; Wood, Valerie; De Pons, Jeffrey L.; Dwinell, Melinda R.; Hayman, G. Thomas; Kaldunski, Mary L.; Kwitek, Anne E.; Laulederkind, Stanley J. F.; Tutaj, Marek A.; Vedi, Mahima; Wang, Shur-Jen; D'Eustachio, Peter; Aimo, Lucila; Axelsen, Kristian; Bridge, Alan; Hyka-Nouspikel, Nevila; Morgat, Anne; Engel, Stacia R.; Karra, Kalpana; Miyasato, Stuart R.; Nash, Robert S.; Skrzypek, Marek S.; Weng, Shuai; Wong, Edith D.; Bakker, Erika; Berardini, Tanya Z.; Reiser, Leonore; Auchincloss, Andrea; Argoud-Puy, Ghislaine; Blatter, Marie-Claude; Boutet, Emmanuel; Breuza, Lionel; Casals-Casas, Cristina; Coudert, Elisabeth; Estreicher, Anne; Livia Famiglietti, Maria; Gos, Arnaud; Gruaz-Gumowski, Nadine; Hulo, Chantal; Jungo, Florence; Le Mercier, Philippe; Lieberherr, Damien; Masson, Patrick; Pedruzzi, Ivo; Pourcel, Lucille; Poux, Sylvain; Rivoire, Catherine; Sundaram, Shyamala; Bateman, Alex; Bowler-Barnett, Emily; Bye-A-Jee, Hema; Denny, Paul; Ignatchenko, Alexandr; Ishtiaq, Rizwan; Lock, Antonia; Lussi, Yvonne; Magrane, Michele; Martin, Maria J.; Orchard, Sandra; Raposo, Pedro; Speretta, Elena; Tyagi, Nidhi; Warner, Kate; Zaru, Rossana; Diehl, Alexander D.; Chan, Juancarlos; Diamantakis, Stavros; Raciti, Daniela; Zarowiecki, Magdalena; Fisher, Malcolm; James-Zorn, Christina; Ponferrada, Virgilio; Zorn, Aaron; Ramachandran, Sridhar; Ruzicka, Leyla; Westerfield, Monte Share Save EMBL's European Bioinformatics Institute (EMBL-EBI) in 2022Thakur, Matthew; Bateman, Alex; Brooksbank, Cath; Freeberg, Mallory; Harrison, Melissa; Hartley, Matthew; Keane, Thomas; Kleywegt, Gerard; Leach, Andrew; Levchenko, Mariia; Morgan, Sarah; McDonagh, Ellen M.; Orchard, Sandra; Papatheodorou, Irene; Velankar, Sameer; Vizcaino, Juan Antonio; Witham, Rick; Zdrazil, Barbara; McEntyre, Johanna Share Save EROS is a selective chaperone regulating the phagocyte NADPH oxidase and purinergic signallingRandzavola, Lyra O.; Mortimer, Paige M.; Garside, Emma; Dufficy, Elizabeth R.; Schejtman, Andrea; Roumelioti, Georgia; Yu, Lu; Pardo, Mercedes; Spirohn, Kerstin; Tolley, Charlotte; Brandt, Cordelia; Harcourt, Katherine; Nichols, Esme; Nahorski, Mike; Woods, Geoff; Williamson, James C.; Suresh, Shreehari; Sowerby, John M.; Matsumoto, Misaki; Santos, Celio X. C.; Kiar, Cher Shen; Mukhopadhyay, Subhankar; Rae, William M.; Dougan, Gordon J.; Grainger, John; Lehner, Paul J.; Calderwood, Michael A.; Choudhary, Jyoti; Clare, Simon; Speak, Anneliese; Santilli, Giorgia; Bateman, Alex; Smith, Kenneth G. C.; Magnani, Francesca; Thomas, David C. Share Save UniProt: the Universal Protein Knowledgebase in 2023Bateman, Alex; Martin, Maria-Jesus; Orchard, Sandra; Magrane, Michele; Ahmad, Shadab; Alpi, Emanuele; Bowler-Barnett, Emily H.; Britto, Ramona; Cukura, Austra; Denny, Paul; Dogan, Tunca; Ebenezer, ThankGod; Fan, Jun; Garmiri, Penelope; Gonzales, Leonardo Jose da Costa; Hatton-Ellis, Emma; Hussein, Abdulrahman; Ignatchenko, Alexandr; Insana, Giuseppe; Ishtiaq, Rizwan; Joshi, Vishal; Jyothi, Dushyanth; Kandasaamy, Swaathi; Lock, Antonia; Luciani, Aurelien; Lugaric, Marija; Luo, Jie; Lussi, Yvonne; MacDougall, Alistair; Madeira, Fabio; Mahmoudy, Mahdi; Mishra, Alok; Moulang, Katie; Nightingale, Andrew; Pundir, Sangya; Qi, Guoying; Raj, Shriya; Raposo, Pedro; Rice, Daniel L.; Saidi, Rabie; Santos, Rafael; Speretta, Elena; Stephenson, James; Totoo, Prabhat; Turner, Edward; Tyagi, Nidhi; Vasudev, Preethi; Warner, Kate; Watkins, Xavier; Zellner, Hermann; Bridge, Alan J.; Aimo, Lucila; Argoud-Puy, Ghis-laine; Auchincloss, Andrea H.; Axelsen, Kristian B.; Bansal, Parit; Baratin, Delphine; Neto, Teresa M. Batista; Blatter, Marie-Claude; Bolleman, Jerven T.; Boutet, Emmanuel; Breuza, Lionel; Gil, Blanca Cabrera; Casals-Casas, Cristina; Echioukh, Kamal Chikh; Coudert, Elisabeth; Cuche, Beatrice; de Castro, Edouard; Estreicher, Anne; Famiglietti, Maria L.; Feuermann, Marc; Gasteiger, Elisabeth; Gaudet, Pascale; Gehant, Sebastien; Gerritsen, Vivienne; Gos, Arnaud; Gruaz, Nadine; Hulo, Chantal; Hyka-Nouspikel, Nevila; Jungo, Florence; Kerhornou, Arnaud; Le Mercier, Philippe; Lieberherr, Damien; Masson, Patrick; Morgat, Anne; Muthukrishnan, Venkatesh; Paesano, Salvo; Pedruzzi, Ivo; Pilbout, Sandrine; Pourcel, Lucille; Poux, Sylvain; Pozzato, Monica; Pruess, Manuela; Redaschi, Nicole; Rivoire, Catherine; Sigrist, Christian J. A.; Sonesson, Karin; Arighi, Cecilia N.; Armin-ski, Leslie; Chen, Chuming; Chen, Yongxing; Huang, Hongzhan; Laiho, Kati; McGarvey, Peter; Natale, Darren A.; Ross, Karen; Vinayaka, C. R.; Wang, Qinghua; Wang, Yuqi; Zhang, Jian; Bye-A-Jee, Hema; Zaru, Rossana; Sundaram, Shyamala; Wu, Cathy H. Share Save InterPro in 2022Paysan-Lafosse, Typhaine; Blum, Matthias; Chuguransky, Sara; Grego, Tiago; Pinto, Beatriz Lazaro; Salazar, Gustavo A.; Bileschi, Maxwell L.; Bork, Peer; Bridge, Alan; Colwell, Lucy; Gough, Julian; Haft, Daniel H.; Letunic, Ivica; Marchler-Bauer, Aron; Mi, Huaiyu; Natale, Darren A.; Orengo, Christine A.; Pandurangan, Arun P.; Rivoire, Catherine; Sigrist, Christian J. A.; Sillitoe, Ian; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C. E.; Wu, Cathy H.; Bateman, Alex Share Save A structural biology community assessment of AlphaFold2 applicationsAkdel, Mehmet; Pires, Douglas E., V; Porta Pardo, Eduard; Janes, Jurgen; Zalevsky, Arthur O.; Meszaros, Balint; Bryant, Patrick; Good, Lydia L.; Laskowski, Roman A.; Pozzati, Gabriele; Shenoy, Aditi; Zhu, Wensi; Kundrotas, Petras; Serra, Victoria Ruiz; Rodrigues, Carlos H. M.; Dunham, Alistair S.; Burke, David; Borkakoti, Neera; Velankar, Sameer; Frost, Adam; Basquin, Jerome; Lindorff-Larsen, Kresten; Bateman, Alex; Kajava, Andrey, V; Valencia, Alfonso; Ovchinnikov, Sergey; Durairaj, Janani; Ascher, David B.; Thornton, Janet M.; Davey, Norman E.; Stein, Amelie; Elofsson, Arne; Croll, Tristan, I; Beltrao, Pedro Share Save A roadmap for the functional annotation of protein families: a community perspectivede Crecy-Lagard, Valerie; de Hegedus, Rocio Amorin; Arighi, Cecilia; Babor, Jill; Bateman, Alex; Blaby, Ian; Blaby-Haas, Crysten; Bridge, Alan J.; Burley, Stephen K.; Cleveland, Stacey; Colwell, Lucy J.; Conesa, Ana; Dallago, Christian; Danchin, Antoine; de Waard, Anita; Deutschbauer, Adam; Dias, Raquel; Ding, Yousong; Fang, Gang; Friedberg, Iddo; Gerlt, John; Goldford, Joshua; Gorelik, Mark; Gyori, Benjamin M.; Henry, Christopher; Hutinet, Geoffrey; Jaroch, Marshall; Karp, Peter D.; Kondratova, Liudmyla; Lu, Zhiyong; Marchler-Bauer, Aron; Martin, Maria-Jesus; McWhite, Claire; Moghe, Gaurav D.; Monaghan, Paul; Morgat, Anne; Mungall, Christopher J.; Natale, Darren A.; Nelson, William C.; O'Donoghue, Sean; Orengo, Christine; O'Toole, Katherine H.; Radivojac, Predrag; Reed, Colbie; Roberts, Richard J.; Rodionov, Dmitri; Rodionova, Irina A.; Rudolf, Jeffrey D.; Saleh, Lana; Sheynkman, Gloria; Thibaud-Nissen, Francoise; Thomas, Paul D.; Uetz, Peter; Vallenet, David; Carter, Erica Watson; Weigele, Peter R.; Wood, Valerie; Wood-Charlson, Elisha M.; Xu, Jin Share Save Share Save The European Bioinformatics Institute (EMBL-EBI) in 2021Cantelli, Gaia; Bateman, Alex; Brooksbank, Cath; Petrov, Anton, I; Malik-Sheriff, Rahuman S.; Ide-Smith, Michele; Hermjakob, Henning; Flicek, Paul; Apweiler, Rolf; Birney, Ewan; McEntyre, Johanna Share Save Share Save 
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