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Kaitlyn Shields

University of Louisville

10H-index
39Paper Count
445Citation Count
Published Papers 11
Publication Date
Population-level genomic analysis of immunoglobulin loci variation in rhesus macaques reveals extensive germline diversity
errImmunity
IF26.3
err2026-01-05
err0
errOAAI
errAyelet Peres; Amit A. Upadhyay; Vered Klein; Swati Saha; Oscar L. Rodriguez; Zachary M. Vanwinkle; Kirti Karunakaran; Amanda Metz; William Lauer; Mark C. Lin; Timothy Melton; Lukas Granholm; Pazit Polak; Samuel M. Peterson; Eric J. Peterson; Nagarajan Raju; Kaitlyn Shields; Steven Schultze; Thang Ton; Adam J. Ericsen
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Germline polymorphisms in the immunoglobulin kappa and lambda loci underpinning antibody light chain repertoire variability
err2025-11-28
err0
errOAAI
errEric Engelbrecht; Oscar L. Rodriguez; William Lees; Zach Vanwinkle; Kaitlyn Shields; Steven Schultze; William S. Gibson; David R. Smith; Uddalok Jana; Swati Saha; Ayelet Peres; Gur Yaari; Melissa L. Smith; Corey T. Watson
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The human IG heavy chain constant gene locus is enriched for large structural variants and coding polymorphisms that vary among human populations
err2025-10-27
err0
errOAAI
errUddalok Jana; Oscar L. Rodriguez; William Lees; Eric Engelbrecht; Zach Vanwinkle; Ayelet Peres; William S. Gibson; Kaitlyn Shields; Steven Schultze; Abdullah Dorgham; Matthew Emery; Gintaras Deikus; Robert Sebra; Evan E. Eichler; Gur Yaari; Melissa L. Smith; Corey T. Watson
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Diverse priming outcomes under conditions of very rare precursor B cells
errIMMUNITY
IF26.3
err2025-04-01
err0
errOAAI
errMadden, Patrick J.; Marina-Zarate, Ester; Rodrigues, Kristen A.; Steichen, Jon M.; Shil, Monolina; Ni, Kaiyuan; Michaels, Katarzyna Kaczmarek; Maiorino, Laura; Upadhyay, Amit A.; Saha, Swati; Pradhan, Arpan; Kalyuzhiny, Oleksandr; Liguori, Alessia; Lopez, Paul G.; Phung, Ivy; Flynn, Claudia; Zhou, Amelia; Melo, Mariane B.; Lemnios, Ashley; Phelps, Nicole; Georgeson, Erik; Alavi, Nushin; Kubitz, Michael; Lu, Danny; Eskandarzadeh, Saman; Metz, Amanda; Rodriguez, Oscar L.; Shields, Kaitlyn; Schultze, Steven; Smith, Melissa L.; Healy, Brandon S.; Lim, Deuk; Lewis, Vanessa R.; Ben-Akiva, Elana; Pinney III, William; Gregory, Justin; Xiao, Shuhao; Carnathan, Diane G.; Kasturi, Sudhir Pai; Watson, Corey T.; Bosinger, Steven E.; Silvestri, Guido; Schief, William R.; Irvine, Darrell J.; Crotty, Shane
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Vaccination induces broadly neutralizing antibody precursors to HIV gp41 (vol 25, pg 1073, 2024)
err2024-06-14
err0
errOAAI
errSchiffner, Torben; Phung, Ivy; Ray, Rashmi; Irimia, Adriana; Tian, Ming; Swanson, Olivia; Lee, Jeong Hyun; Lee, Chang-Chun D.; Marina-Zarate, Ester; Cho, So Yeon; Huang, Jiachen; Ozorowski, Gabriel; Skog, Patrick D.; Serra, Andreia M.; Rantalainen, Kimmo; Allen, Joel D.; Baboo, Sabyasachi; Rodriguez, Oscar L.; Himansu, Sunny; Zhou, Jianfu; Hurtado, Jonathan; Flynn, Claudia T.; McKenney, Katherine; Havenar-Daughton, Colin; Saha, Swati; Shields, Kaitlyn; Schultze, Steven; Smith, Melissa L.; Liang, Chi-Hui; Toy, Laura; Pecetta, Simone; Lin, Ying-Cing; Willis, Jordan R.; Sesterhenn, Fabian; Kulp, Daniel W.; Hu, Xiaozhen; Cottrell, Christopher A.; Zhou, Xiaoya; Ruiz, Jennifer; Wang, Xuesong; Nair, Usha; Kirsch, Kathrin H.; Cheng, Hwei-Ling; Davis, Jillian; Kalyuzhniy, Oleksandr; Liguori, Alessia; Diedrich, Jolene K.; Ngo, Julia T.; Lewis, Vanessa; Phelps, Nicole; Tingle, Ryan D.; Spencer, Skye; Georgeson, Erik; Adachi, Yumiko; Kubitz, Michael; Eskandarzadeh, Saman; Elsliger, Marc A.; Amara, Rama R.; Landais, Elise; Briney, Bryan; Burton, Dennis R.; Carnathan, Diane G.; Silvestri, Guido; Watson, Corey T.; Yates, John R.; Paulson, James C.; Crispin, Max; Grigoryan, Gevorg; Ward, Andrew B.; Sok, Devin; Alt, Frederick W.; Wilson, Ian A.; Batista, Facundo D.; Crotty, Shane; Schief, William R.
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Resolving haplotype variation and complex genetic architecture in the human immunoglobulin kappa chain locus in individuals of diverse ancestry
err2024-06-06
err1
errOAAI
errEngelbrecht, Eric; Rodriguez, Oscar L.; Shields, Kaitlyn; Schultze, Steven; Tieri, David; Jana, Uddalok; Yaari, Gur; Lees, William D.; Smith, Melissa L.; Watson, Corey T.
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Vaccination induces broadly neutralizing antibody precursors to HIV gp41
err2024-05-30
err9
errOAAI
errSchiffner, Torben; Phung, Ivy; Ray, Rashmi; Irimia, Adriana; Tian, Ming; Swanson, Olivia; Lee, Jeong Hyun; Lee, Chang-Chun D.; Marina-Zarate, Ester; Cho, So Yeon; Huang, Jiachen; Ozorowski, Gabriel; Skog, Patrick D.; Serra, Andreia M.; Rantalainen, Kimmo; Allen, Joel D.; Baboo, Sabyasachi; Rodriguez, Oscar L.; Himansu, Sunny; Zhou, Jianfu; Hurtado, Jonathan; Flynn, Claudia T.; Mckenney, Katherine; Havenar-Daughton, Colin; Saha, Swati; Shields, Kaitlyn; Schulze, Steven; Smith, Melissa L.; Liang, Chi-Hui; Toy, Laura; Pecetta, Simone; Lin, Ying-Cing; Willis, Jordan R.; Sesterhenn, Fabian; Kulp, Daniel W.; Hu, Xiaozhen; Cottrell, Christopher A.; Zhou, Xiaoya; Ruiz, Jennifer; Wang, Xuesong; Nair, Usha; Kirsch, Kathrin H.; Cheng, Hwei-Ling; Davis, Jillian; Kalyuzhniy, Oleksandr; Liguori, Alessia; Diedrich, Jolene K.; Ngo, Julia T.; Lewis, Vanessa; Phelps, Nicole; Tingle, Ryan D.; Spencer, Skye; Georgeson, Erik; Adachi, Yumiko; Kubitz, Michael; Eskandarzadeh, Saman; Elsliger, Marc A.; Amara, Rama R.; Landais, Elise; Briney, Bryan; Burton, Dennis R.; Carnathan, Diane G.; Silvestri, Guido; Watson, Corey T.; Yates III, John R.; Paulson, James C.; Crispin, Max; Grigoryan, Gevorg; Ward, Andrew B.; Sok, Devin; Alt, Frederick W.; Wilson, Ian A.; Batista, Facundo D.; Crotty, Shane; Schief, William R.
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Resolving haplotype variation and complex genetic architecture in the human immunoglobulin kappa and lambda chain loci in individuals of diverse ancestry
err2024-05-01
err0
PREAI
errEngelbrecht, Eric; Rodriguez, Oscar; Shields, Kaitlyn; Schultze, Steven; Tieri, David; Jana, Uddalok; Lees, William; Smith, Melissa; Watson, Corey
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Genetic variation in the immunoglobulin heavy chain locus shapes the human antibody repertoire
err2023-07-21
err19
errOAAI
errRodriguez, Oscar L.; Safonova, Yana; Silver, Catherine A.; Shields, Kaitlyn; Gibson, William S.; Kos, Justin T.; Tieri, David; Ke, Hanzhong; Jackson, Katherine J. L.; Boyd, Scott D.; Smith, Melissa L.; Marasco, Wayne A.; Watson, Corey T.
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Characterization of the immunoglobulin lambda chain locus from diverse populations reveals extensive genetic variation
err2022-12-21
err18
errOAAI
errGibson, William S.; Rodriguez, Oscar L.; Shields, Kaitlyn; Silver, Catherine A.; Dorgham, Abdullah; Emery, Matthew; Deikus, Gintaras; Sebra, Robert; Eichler, Evan E.; Bashir, Ali; Smith, Melissa L.; Watson, Corey T.
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Targeted long-read sequencing facilitates phased diploid assembly and genotyping of the human T cell receptor alpha, delta, and beta loci
err2022-12-01
err8
errOAAI
errRodriguez, Oscar L.; Silver, Catherine A.; Shields, Kaitlyn; Smith, Melissa L.; Watson, Corey T.
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