Not logged in Symmetric and asymmetric DNA N6-adenine methylation regulates different biological responses in Mucorales Lax, Carlos; Mondo, Stephen J.; Osorio-Concepcion, Macario; Muszewska, Anna; Corrochano-Luque, Maria; Gutierrez, Gabriel; Riley, Robert; Lipzen, Anna; Guo, Jie; Hundley, Hope; Amirebrahimi, Mojgan; Ng, Vivian; Lorenzo-Gutierrez, Damaris; Binder, Ulrike; Yang, Junhuan; Song, Yuanda; Canovas, David; Navarro, Eusebio; Freitag, Michael; Gabaldon, Toni; Grigoriev, Igor V.; Corrochano, Luis M.; Nicolas, Francisco E.; Garre, Victoriano Share Save
Haplotype-resolved genome assembly of Populus tremula x P. alba reveals aspen-specific megabase satellite DNA Zhou, Ran; Jenkins, Jerry W.; Zeng, Yibing; Shu, Shengqiang; Jang, Hosung; Harding, Scott A.; Williams, Melissa; Plott, Christopher; Barry, Kerrie W.; Koriabine, Maxim; Amirebrahimi, Mojgan; Talag, Jayson; Rajasekar, Shanmugam; Grimwood, Jane; Schmitz, Robert J.; Dawe, R. Kelly; Schmutz, Jeremy; Tsai, Chung-Jui Share Save
JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the plant kingdom Sreedasyam, Avinash; Plott, Christopher; Hossain, Md Shakhawat; Lovell, John T.; Grimwood, Jane; Jenkins, Jerry W.; Daum, Christopher; Barry, Kerrie; Carlson, Joseph; Shu, Shengqiang; Phillips, Jeremy; Amirebrahimi, Mojgan; Zane, Matthew; Wang, Mei; Goodstein, David; Haas, Fabian B.; Hiss, Manuel; Perroud, Pierre-Francois; Jawdy, Sara S.; Yang, Yongil; Hu, Rongbin; Johnson, Jenifer; Kropat, Janette; Gallaher, Sean D.; Lipzen, Anna; Shakirov, Eugene, V; Weng, Xiaoyu; Torres-Jerez, Ivone; Weers, Brock; Conde, Daniel; Pappas, Marilia R.; Liu, Lifeng; Muchlinski, Andrew; Jiang, Hui; Shyu, Christine; Huang, Pu; Sebastian, Jose; Laiben, Carol; Medlin, Alyssa; Carey, Sankalpi; Carrell, Alyssa A.; Chen, Jin-Gui; Perales, Mariano; Swaminathan, Kankshita; Allona, Isabel; Grattapaglia, Dario; Cooper, Elizabeth A.; Tholl, Dorothea; Vogel, John P.; Weston, David J.; Yang, Xiaohan; Brutnell, Thomas P.; Kellogg, Elizabeth A.; Baxter, Ivan; Udvardi, Michael; Tang, Yuhong; Mockler, Todd C.; Juenger, Thomas E.; Mullet, John; Rensing, Stefan A.; Tuskan, Gerald A.; Merchant, Sabeeha S.; Stacey, Gary; Schmutz, Jeremy Share Save
Acquisition of host-derived carbon in biomass of the ectomycorrhizal fungus Pisolithus microcarpus is correlated to fungal carbon demand and plant defences Stuart, Emiko K.; Singan, Vasanth; Amirebrahimi, Mojgan; Na, Hyunsoo; Ng, Vivian; Grigoriev, Igor, V; Martin, Francis; Anderson, Ian C.; Plett, Jonathan M.; Plett, Krista L. Share Save
Cryptic genetic structure and copy-number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum Dauphin, Benjamin; Pereira, Maira de Freitas; Kohler, Annegret; Grigoriev, Igor, V; Barry, Kerrie; Na, Hyunsoo; Amirebrahimi, Mojgan; Lipzen, Anna; Martin, Francis; Peter, Martina; Croll, Daniel Share Save
Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus Koch, Rachel A.; Yoon, Gyeong Mee; Aryal, Uma K.; Lail, Kathleen; Amirebrahimi, Mojgan; LaButti, Kurt; Lipzen, Anna; Riley, Robert; Barry, Kerrie; Henrissat, Bernard; Grigoriev, Igor, V; Herr, Joshua R.; Aime, M. Catherine Share Save
Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation Hagestad, Ole Christian; Hou, Lingwei; Andersen, Jeanette H.; Hansen, Espen H.; Altermark, Bjorn; Li, Chun; Kuhnert, Eric; Cox, Russell J.; Crous, Pedro W.; Spatafora, Joseph W.; Lail, Kathleen; Amirebrahimi, Mojgan; Lipzen, Anna; Pangilinan, Jasmyn; Andreopoulos, William; Hayes, Richard D.; Ng, Vivian; Grigoriev, Igor, V; Jackson, Stephen A.; Sutton, Thomas D. S.; Dobson, Alan D. W.; Rama, Teppo Share Save
Genetic dissection of natural variation in oilseed traits of camelina by whole-genome resequencing and QTL mapping Li, Huang; Hu, Xiao; Lovell, John T.; Grabowski, Paul P.; Mamidi, Sujan; Chen, Cindy; Amirebrahimi, Mojgan; Kahanda, Indika; Mumey, Brendan; Barry, Kerrie; Kudrna, David; Schmutz, Jeremy; Lachowiec, Jennifer; Lu, Chaofu Share Save
IMITATION SWITCH is required for normal chromatin structure and gene repression in PRC2 target domains Kamei, Masayuki; Ameri, Abigail J.; Ferraro, Aileen R.; Bar-Peled, Yael; Zhao, Fangzhou; Ethridge, Christina L.; Lail, Kathleen; Amirebrahimi, Mojgan; Lipzen, Anna; Ng, Vivian; Grigoriev, Igor, V; Schmitz, Robert J.; Liu, Yi; Lewis, Zachary A. Share Save
An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in host roots Basso, Veronica; Kohler, Annegret; Miyauchi, Shingo; Singan, Vasanth; Guinet, Frederic; Simura, Jan; Novak, Ondrej; Barry, Kerrie W.; Amirebrahimi, Mojgan; Block, Jonathan; Daguerre, Yohann; Na, Hyunsoo; Grigoriev, Igor, V; Martin, Francis; Veneault-Fourrey, Claire Share Save
The Physcomitrella patens gene atlas project: large-scale RNA-seq based expression data Perroud, Pierre-Francois; Haas, Fabian B.; Hiss, Manuel; Ullrich, Kristian K.; Alboresi, Alessandro; Amirebrahimi, Mojgan; Barry, Kerrie; Bassi, Roberto; Bonhomme, Sandrine; Chen, Haodong; Coates, Juliet C.; Fujita, Tomomichi; Guyon-Debast, Anouchka; Lang, Daniel; Lin, Junyan; Lipzen, Anna; Nogue, Fabien; Oliver, Melvin J.; Ponce de Leon, Ines; Quatrano, Ralph S.; Rameau, Catherine; Reiss, Bernd; Reski, Ralf; Ricca, Mariana; Saidi, Younousse; Sun, Ning; Szoevenyi, Peter; Sreedasyam, Avinash; Grimwood, Jane; Stacey, Gary; Schmutz, Jeremy; Rensing, Stefan A. Share Save
The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization McCormick, Ryan F.; Truong, Sandra K.; Sreedasyam, Avinash; Jenkins, Jerry; Shu, Shengqiang; Sims, David; Kennedy, Megan; Amirebrahimi, Mojgan; Weers, Brock D.; McKinley, Brian; Mattison, Ashley; Morishige, Daryl T.; Grimwood, Jane; Schmutz, Jeremy; Mullet, John E. Share Save
Accurate, multi-kb reads resolve complex populations and detect rare microorganisms Sharon, Itai; Kertesz, Michael; Hug, Laura A.; Pushkarev, Dmitry; Blauwkamp, Timothy A.; Castelle, Cindy J.; Amirebrahimi, Mojgan; Thomas, Brian C.; Burstein, David; Tringe, Susannah G.; Williams, Kenneth H.; Banfield, Jillian F. Share Save
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