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J

Jeremy Schmutz

HudsonAlpha Institute for Biotechnology

112H-index
511Paper Count
9.8WCitation Count
Published Papers 203
Publication Date
Assembly of Silphium interspecific hybrid genomes opens the genus to phylogenomics, ecogenomics, and molecular breeding
err2026-07-09
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errRenan S. Souza; Josh P. Clevenger; Jerry Jenkins; Walid Korani; Jeremy Schmutz; Jane Grimwood; Christopher Plott; Yaniv Brandvain; Kathryn Turner; Allison J. Miller; Brent S. Hulke; Louis F. Nastasi; Ebony G. Murrell; Lori H. Handley; Jenell Webber; Lori Beth Boston; Stella Woeltjen; Matthew J. Rubin; Betsy Trana; Erin Howard; Ashlyn Bazzel; Alex Harkess; David L. Van Tassel
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Compilation and utilization of a sorghum transcriptome compendium for gene regulatory network analysis and crop trait engineering
err2026-05-20
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errOAAI
errPriscilla D. Glenn; Brian A. McKinley; Kerrie Barry; Jeremy Schmutz; John E. Mullet
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Structure and sequence evolution in the pennycress (Thlaspi arvense) pangenome
err2026-04-02
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errOAAI
errKevin A. Bird; Joanna L. Rifkin; Chloee M. McLaughlin; Avril M. Harder; Pawan Basnet; Ella Katz; Tomáš Brůna; Kerrie Barry; LoriBeth Boston; Christopher Daum; Jie Guo; Anna Lipzen; Christopher Plott; Jerry W. Jenkins; Rachel Walstead; Shanmugam Rajasekar; Jayson Talag; Katherine Frels; Kathleen Greenham; Shelby Ellison; Jane Grimwood; Jeremy Schmutz; Patrick P. Edger; J. Chris Pires; John T. Lovell; Daniel J. Kliebenstein
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Genomic approaches to accelerate American chestnut restoration
errScience
IF45.8
err2026-02-12
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PREAI
errJared W. Westbrook; Joanna Malukiewicz; Qian Zhang; Avinash Sreedasyam; Jerry W. Jenkins; Vasiliy Lakoba; Sara Fitzsimmons; Jamie Van Clief; Kendra Collins; Stephen Hoy; Cassie Stark; Lake Graboski; Eric Jenkins; Thomas M. Saielli; Benjamin T. Jarrett; Lucinda J. Wigfield; Lauren M. Kerwien; Ciera Wilbur; Alexander M. Sandercock; J. Hill Craddock; Susanna Keriö; Tetyana Zhebentyayeva; Shenghua Fan; Austin M. Thomas; Albert G. Abbott; C. Dana Nelson; Xiaoxia Xia; James R. McKenna; Caleb Kell; Melissa Williams; LoriBeth Boston; Christopher Plott; Florian Carle; Jack Swatt; Jack Ostroff; Steven N. Jeffers; Kathleen McKeever; Erica Smith; Thomas J. Ellis; Joseph B. James; Paul Sisco; Andrew Newhouse; Erik Carlson; William A. Powell; Frederick V. Hebard; John Scrivani; Caragh Heverly; Martin Cipollini; Brian Clark; Eric Evans; Bruce Levine; John E. Carlson; David Goodstein; Jack Orebaugh; Zamin K. Yang; Madhavi Z. Martin; Joanna Tannous; Tomás A. Rush; Nancy L. Engle; Timothy J. Tschaplinski; Jane Grimwood; Jeremy Schmutz; Jason A. Holliday; John T. Lovell
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Multi-season analysis reveals hundreds of drought-responsive genes in sorghum
err2026-02-02
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errOAAI
errBenjamin Cole; Wenxin Zhang; Junming Shi; Hao Wang; Christopher Baker; Nelle Varoquaux; Joy Hollingsworth; Robert Hutmacher; Jeffery Dahlberg; Grady Pierroz; Kerrie W. Barry; Vasanth Singan; Yuko Yoshinaga; Christopher Daum; Matthew Zane; Matthew Blow; Ronan O’Malley; Shengqiang Shu; Jerry W. Jenkins; John T. Lovell; Jeremy Schmutz; John W. Taylor; Devin Coleman-Derr; Axel Visel; Peggy G. Lemaux; Elizabeth Purdom; John P. Vogel
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Rhythmic Mechanisms Governing CAM Photosynthesis in Kalanchoe fedtschenkoi: High-Resolution Temporal Transcriptomics
err2026-01-30
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errOAAI
errRongbin Hu; Sara Jawdy; Avinash Sreedasyam; Anna Lipzen; Mei Wang; Vivian Ng; Christopher Daum; Keykhosrow Keymanesh; Degao Liu; Alex Hu; Asher Pasha; Nicholas J. Provart; Anne M. Borland; Timothy J. Tschaplinski; Gerald A. Tuskan; Jeremy Schmutz; Xiaohan Yang
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The architecture of resilience: a genome assembly of Myrothamnus flabellifolia sheds light on desiccation tolerance and sex determination
err2025-11-02
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errRose A. Marks; John T. Lovell; Sarah B. Carey; Llewelyn Van Der Pas; Nyaradzai M. Chimukuche; Tomáš Brůna; Christopher Plott; Jenell Webber; Anna Lipzen; Juying Yan; Diane Bauer; Joanne Bentley; Jayson Talag; Chloee M. McLaughlin; Kerrie Barry; Jane Grimwood; Jerry W. Jenkins; Jeremy Schmutz; Alex Harkess; Robert VanBuren; James Leebens-Mack; Jill M. Farrant
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The genomic footprints of wild Saccharum species trace domestication, diversification, and modern breeding of sugarcane
errCell
IF42.5
err2025-10-14
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errOAAI
errOlivier Garsmeur; Simon Rio; Nicolas Pompidor; Anna Lipzen; Catherine Hervouet; Théo Durand; Chris Daum; Yuko Yoshinaga; Mike Butterfield; Alexander Sanchez; George Piperidis; Noa Lincoln; Anna Hale; Jean Yves Hoarau; Yoshifumi Terajima; Prakash Lakshmanan; Erik Sacks; Shailendra Sharma; Marotea Vitrac; Kerrie Barry; Jeremy Schmutz; Angélique D’Hont
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Genome-resolved biogeography of Phaeocystales, cosmopolitan bloom-forming algae
err2025-09-29
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errOAAI
errZoltán Füssy; Robert H. Lampe; Kevin R. Arrigo; Kerrie Barry; Margaret M. Brisbin; Corina P. D. Brussaard; Johan Decelle; Colomban de Vargas; Giacomo R. DiTullio; Liam D. H. Elbourne; Marc E. Frischer; David M. Goodstein; Igor V. Grigoriev; Richard D. Hayes; Adam L. Healey; Chase C. James; Jerry W. Jenkins; Caroline Juery; Manish Kumar; Adam B. Kustka; Florian Maumus; Anna M. G. Novák Vanclová; Miroslav Oborník; Ian T. Paulsen; Ian Probert; Mak A. Saito; Jeremy Schmutz; Tomáš Skalický; Diego Tec-Campos; Hannah Tomelka; Pavlína Věchtová; Pratap Venepally; Brendan Wilson-Mortier; Karsten Zengler; Hong Zheng; Andrew E. Allen
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Scaffolded and annotated nuclear and organelle genomes of the North American brown alga Saccharina latissima
err2025-05-14
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errOAAI
errDeWeese, Kelly; Molano, Gary; Calhoun, Sara; Lipzen, Anna; Jenkins, Jerry; Williams, Melissa; Plott, Christopher; Talag, Jayson; Grimwood, Jane; Jannink, Jean-Luc; Grigoriev, Igor V.; Schmutz, Jeremy; Yarish, Charles; Nuzhdin, Sergey; Lindell, Scott
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Transcriptomic Analysis of the CAM Species Kalanchoë fedtschenkoi Under Low- and High-Temperature Regimes
err2024-12-08
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errOAAI
errHu, Rongbin; Zhang, Jin; Jawdy, Sara; Sreedasyam, Avinash; Lipzen, Anna; Wang, Mei; Ng, Vivian; Daum, Christopher; Keymanesh, Keykhosrow; Liu, Degao; Hu, Alex; Chen, Jin-Gui; Tuskan, Gerald A.; Schmutz, Jeremy; Yang, Xiaohan
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ZW sex chromosome structure in Amborella trichopoda
err2024-11-25
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errOAAI
errCarey, Sarah B.; Akoezbek, Laramie; Lovell, John T.; Jenkins, Jerry; Healey, Adam L.; Shu, Shengqiang; Grabowski, Paul; Yocca, Alan; Stewart, Ada; Jones, Teresa; Barry, Kerrie; Rajasekar, Shanmugam; Talag, Jayson; Scutt, Charlie; Lowry, Porter P.; Munzinger, Jerome; Knox, Eric B.; Soltis, Douglas E.; Soltis, Pamela S.; Grimwood, Jane; Schmutz, Jeremy; Leebens-Mack, James; Harkess, Alex
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Soybean genomics research community strategic plan: A vision for 2024-2028
err2024-11-21
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errOAAI
errStupar, Robert M.; Locke, Anna M.; Allen, Doug K.; Stacey, Minviluz G.; Ma, Jianxin; Weiss, Jackie; Nelson, Rex T.; Hudson, Matthew E.; Joshi, Trupti; Li, Zenglu; Song, Qijian; Jedlicka, Joseph R.; Macintosh, Gustavo C.; Grant, David; Parrott, Wayne A.; Clemente, Tom E.; Stacey, Gary; An, Yong-qiang Charles; Aponte-Rivera, Jose; Bhattacharyya, Madan K.; Baxter, Ivan; Bilyeu, Kristin D.; Campbell, Jacqueline D.; Cannon, Steven B.; Clough, Steven J.; Curtin, Shaun J.; Diers, Brian W.; Dorrance, Anne E.; Gillman, Jason D.; Graef, George L.; Hancock, C. Nathan; Hudson, Karen A.; Hyten, David L.; Kachroo, Aardra; Koebernick, Jenny; Libault, Marc; Lorenz, Aaron J.; Mahan, Adam L.; Massman, Jon M.; Mcginn, Michaela; Meksem, Khalid; Okamuro, Jack K.; Pedley, Kerry F.; Rainey, Katy Martin; Scaboo, Andrew M.; Schmutz, Jeremy; Song, Bao-Hua; Steinbrenner, Adam D.; Stewart-Brown, Benjamin B.; Toth, Katalin; Wang, Dechun; Weaver, Lisa; Zhang, Bo; Graham, Michelle A.; O'Rourke, Jamie A.
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Allopolyploidy expanded gene content but not pangenomic variation in the hexaploid oilseed Camelina sativa
err2024-11-15
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errOAAI
errBird, Kevin A.; Brock, Jordan R.; Grabowski, Paul P.; Harder, Avril M.; Healy, Adam L.; Shu, Shengqiang; Barry, Kerrie; Boston, Loribeth; Daum, Christopher; Guo, Jie; Lipzen, Anna; Walstead, Rachel; Grimwood, Jane; Schmutz, Jeremy; Lu, Chaofu; Comai, Luca; Mckay, John K.; Pires, J. Chris; Edger, Patrick P.; Lovell, John T.; Kliebenstein, Daniel J.
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Assembly, comparative analysis, and utilization of a single haplotype reference genome for soybean
err2024-09-14
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errOAAI
errEspina, Mary Jane C.; Lovell, John T.; Jenkins, Jerry; Shu, Shengqiang; Sreedasyam, Avinash; Jordan, Brandon D.; Webber, Jenell; Boston, LoriBeth; Bruna, Tomas; Talag, Jayson; Goodstein, David; Grimwood, Jane; Stacey, Gary; Cannon, Steven B.; Lorenz, Aaron J.; Schmutz, Jeremy; Stupar, Robert M.
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Comparative genomic analysis of thermophilic fungi reveals convergent evolutionary adaptations and gene losses
err2024-09-12
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errOAAI
errSteindorff, Andrei S.; Aguilar-Pontes, Maria Victoria; Robinson, Aaron J.; Andreopoulos, Bill; Labutti, Kurt; Kuo, Alan; Mondo, Stephen; Riley, Robert; Otillar, Robert; Haridas, Sajeet; Lipzen, Anna; Grimwood, Jane; Schmutz, Jeremy; Clum, Alicia; Reid, Ian D.; Moisan, Marie-Claude; Butler, Gregory; Nguyen, Thi Truc Minh; Dewar, Ken; Conant, Gavin; Drula, Elodie; Henrissat, Bernard; Hansel, Colleen; Singer, Steven; Hutchinson, Miriam I.; de Vries, Ronald P.; Natvig, Donald O.; Powell, Amy J.; Tsang, Adrian; Grigoriev, Igor V.
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Unlocking saponin biosynthesis in soapwort
err2024-07-23
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errOAAI
errJo, Seohyun; El-Demerdash, Amr; Owen, Charlotte; Srivastava, Vikas; Wu, Dewei; Kikuchi, Shingo; Reed, James; Hodgson, Hannah; Harkess, Alex; Shu, Shengqiang; Plott, Chris; Jenkins, Jerry; Williams, Melissa; Boston, Lori-Beth; Lacchini, Elia; Qu, Tongtong; Goossens, Alain; Grimwood, Jane; Schmutz, Jeremy; Leebens-Mack, Jim; Osbourn, Anne
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Genome resources for three modern cotton lines guide future breeding efforts
err2024-05-30
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errOAAI
errSreedasyam, Avinash; Lovell, John T.; Mamidi, Sujan; Khanal, Sameer; Jenkins, Jerry W.; Plott, Christopher; Bryan, Kempton B.; Li, Zhigang; Shu, Shengqiang; Carlson, Joseph; Goodstein, David; De Santiago, Luis; Kirkbride, Ryan C.; Calleja, Sebastian; Campbell, Todd; Koebernick, Jenny C.; Dever, Jane K.; Scheffler, Jodi A.; Pauli, Duke; Jenkins, Johnie N.; Mccarty, Jack C.; Williams, Melissa; Boston, Loribeth; Webber, Jenell; Udall, Joshua A.; Chen, Z. Jeffrey; Bourland, Fred; Stiller, Warwick N.; Saski, Christopher A.; Grimwood, Jane; Chee, Peng W.; Jones, Don C.; Schmutz, Jeremy
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Seagrass genomes reveal ancient polyploidy and adaptations to the marine environment
err2024-01-26
err10
errOAAI
errMa, Xiao; Vanneste, Steffen; Chang, Jiyang; Ambrosino, Luca; Barry, Kerrie; Bayer, Till; Bobrov, Alexander A.; Boston, LoriBeth; Campbell, Justin E.; Chen, Hengchi; Chiusano, Maria Luisa; Dattolo, Emanuela; Grimwood, Jane; He, Guifen; Jenkins, Jerry; Khachaturyan, Marina; Marin-Guirao, Lazaro; Mesterhazy, Attila; Muhd, Danish-Daniel; Pazzaglia, Jessica; Plott, Chris; Rajasekar, Shanmugam; Rombauts, Stephane; Ruocco, Miriam; Scott, Alison; Tan, Min Pau; Van de Velde, Jozefien; Vanholme, Bartel; Webber, Jenell; Wong, Li Lian; Yan, Mi; Sung, Yeong Yik; Novikova, Polina; Schmutz, Jeremy; Reusch, Thorsten B. H.; Procaccini, Gabriele; Olsen, Jeanine L.; Van de Peer, Yves
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Extraordinary preservation of gene collinearity over three hundred million years revealed in homosporous lycophytes
err2024-01-18
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errOAAI
errLi, Cheng; Wickell, David; Kuo, Li-Yaung; Chen, Xueqing; Nie, Bao; Liao, Xuezhu; Peng, Dan; Ji, Jiaojiao; Jenkins, Jerry; Williams, Mellissa; Shu, Shengqiang; Plott, Christopher; Barry, Kerrie; Rajasekar, Shanmugam; Grimwood, Jane; Han, Xiaoxu; Sun, Shichao; Hou, Zhuangwei; He, Weijun; Dai, Guanhua; Sun, Cheng; Schmutz, Jeremy; Leebens-Mack, James H.; Li, Fay-Wei; Wang, Li
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