W. John Wilbur - Publications, H-index & Citations

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W. John Wilbur

national institutes of health (nih) - usa

46H-index

221Paper Count

1.1WCitation Count

Published Papers 32

Publication Date

LitSense 2.0: AI-powered biomedical information retrieval with sentence and passage level knowledge discovery

NUCLEIC ACIDS RESEARCH

IF13.1

2025-05-16

OAAI

Yeganova, Lana; Kim, Won; Tian, Shubo; Comeau, Donald C.; Wilbur, W. John

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Comprehensively identifying Long Covid articles with human-in-the-loop machine learning

PATTERNS

IF7.4

2023-01-01

OAAI

Leaman, Robert; Islamaj, Rezarta; Allot, Alexis; Chen, Qingyu; Wilbur, W. John; Lu, Zhiyong

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Evolving use of ancestry, ethnicity, and race in genetics research-A survey spanning seven decades

AMERICAN JOURNAL OF HUMAN GENETICS

IF8.1

2021-12-01

OAAI

Byeon, Yen Ji Julia; Islamaj, Rezarta; Yeganova, Lana; Wilbur, W. John; Lu, Zhiyong; Brody, Lawrence C.; Bonham, Vence L.

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Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records

BMC MEDICAL INFORMATICS AND DECISION MAKING

IF3.8

2020-04-30

OAAI

Chen, Qingyu; Du, Jingcheng; Kim, Sun; Wilbur, W. John; Lu, Zhiyong

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DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2019-07-02

OAAI

Islamaj, Rezarta; Wilbur, W. John; Xie, Natalie; Gonzales, Noreen R.; Thanki, Narmada; Yamashita, Roxanne; Zheng, Chanjuan; Marchler-Bauer, Aron; Lu, Zhiyong

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LitSense: making sense of biomedical literature at sentence level

NUCLEIC ACIDS RESEARCH

IF13.1

2019-04-25

OAAI

Allot, Alexis; Chen, Qingyu; Kim, Sun; Alvarez, Roberto Vera; Comeau, Donald C.; Wilbur, W. John; Lu, Zhiyong

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A Field Sensor: computing the composition and intent of PubMed queries

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2018-07-12

OAAI

Yeganova, Lana; Kim, Won; Comeau, Donald C.; Wilbur, W. John; Lu, Zhiyong

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Bridging the gap: Incorporating a semantic similarity measure for effectively mapping PubMed queries to documents

JOURNAL OF BIOMEDICAL INFORMATICS

IF4.5

2017-11-01

OAAI

Kim, Sun; Fiorini, Nicolas; Wilbur, W. John; Lu, Zhiyong

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The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2017-01-10

OAAI

Dogan, Rezarta Islamaj; Kim, Sun; Chatr-aryamontri, Andrew; Chang, Christie S.; Oughtred, Rose; Rust, Jennifer; Wilbur, W. John; Comeau, Donald C.; Dolinski, Kara; Tyers, Mike

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BioCreative V BioC track overview: collaborative biocurator assistant task for BioGRID

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2016-09-01

OAAI

Kim, Sun; Dogan, Rezarta Islamaj; Chatr-Aryamontri, Andrew; Chang, Christie S.; Oughtred, Rose; Rust, Jennifer; Batista-Navarro, Riza; Carter, Jacob; Ananiadou, Sophia; Matos, Sergio; Santos, Andre; Campos, David; Oliveira, Jose Luis; Singh, Onkar; Jonnagaddala, Jitendra; Dai, Hong-Jie; Su, Emily Chia-Yu; Chang, Yung-Chun; Su, Yu-Chen; Chu, Chun-Han; Chen, Chien Chin; Hsu, Wen-Lian; Peng, Yifan; Arighi, Cecilia; Wu, Cathy H.; Vijay-Shanker, K.; Aydin, Ferhat; Husunbeyi, Zehra Melce; Ozgur, Arzucan; Shin, Soo-Yong; Kwon, Dongseop; Dolinski, Kara; Tyers, Mike; Wilbur, W. John; Comeau, Donald C.

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BioC viewer: a web-based tool for displaying and merging annotations in BioC

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2016-08-10

OAAI

Shin, Soo-Yong; Kim, Sun; Wilbur, W. John; Kwon, Dongseop

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Extracting drug-drug interactions from literature using a rich feature-based linear kernel approach

JOURNAL OF BIOMEDICAL INFORMATICS

IF4.5

2015-06-01

141

OAAI

Kim, Sun; Liu, Haibin; Yeganova, Lana; Wilbur, W. John

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BioC implementations in Go, Perl, Python and Ruby

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2014-06-23

OAAI

Liu, Wanli; Dogan, Rezarta Islamaj; Kwon, Dongseop; Marques, Hernani; Rinaldi, Fabio; Wilbur, W. John; Comeau, Donald C.

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Natural language processing pipelines to annotate BioC collections with an application to the NCBI disease corpus

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2014-06-16

OAAI

Comeau, Donald C.; Liu, Haibin; Dogan, Rezarta Islamaj; Wilbur, W. John

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Finding abbreviations in biomedical literature: three BioC-compatible modules and four BioC-formatted corpora

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2014-06-09

OAAI

Dogan, Rezarta Islamaj; Comeau, Donald C.; Yeganova, Lana; Wilbur, W. John

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BioC: a minimalist approach to interoperability for biomedical text processing

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2013-09-18

OAAI

Comeau, Donald C.; Dogan, Rezarta Islamaj; Ciccarese, Paolo; Cohen, Kevin Bretonnel; Krallinger, Martin; Leitner, Florian; Lu, Zhiyong; Peng, Yifan; Rinaldi, Fabio; Torii, Manabu; Valencia, Alfonso; Verspoor, Karin; Wiegers, Thomas C.; Wu, Cathy H.; Wilbur, W. John

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An overview of the BioCreative 2012 Workshop Track III: interactive text mining task

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2013-01-17

OAAI

Arighi, Cecilia N.; Carterette, Ben; Cohen, K. Bretonnel; Krallinger, Martin; Wilbur, W. John; Fey, Petra; Dodson, Robert; Cooper, Laurel; Van Slyke, Ceri E.; Dahdul, Wasila; Mabee, Paula; Li, Donghui; Harris, Bethany; Gillespie, Marc; Jimenez, Silvia; Roberts, Phoebe; Matthews, Lisa; Becker, Kevin; Drabkin, Harold; Bello, Susan; Licata, Luana; Chatr-Aryamontri, Andrew; Schaeffer, Mary L.; Park, Julie; Haendel, Melissa; Van Auken, Kimberly; Li, Yuling; Chan, Juancarlos; Muller, Hans-Michael; Cui, Hong; Balhoff, James P.; Wu, Johnny Chi-Yang; Lu, Zhiyong; Wei, Chih-Hsuan; Tudor, Catalina O.; Raja, Kalpana; Subramani, Suresh; Natarajan, Jeyakumar; Cejuela, Juan Miguel; Dubey, Pratibha; Wu, Cathy

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BioCreative-2012 Virtual Issue

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2012-12-05

OAAI

Wu, Cathy H.; Arighi, Cecilia N.; Cohen, Kevin B.; Hirschman, Lynette; Krallinger, Martin; Lu, Zhiyong; Mattingly, Carolyn; Valencia, Alfonso; Wiegers, Thomas C.; Wilbur, W. John

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Identifying well-formed biomedical phrases in MEDLINE® text

JOURNAL OF BIOMEDICAL INFORMATICS

IF4.5

2012-12-01

OAAI

Kim, Won; Yeganova, Lana; Comeau, Donald C.; Wilbur, W. John

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Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2012-11-17

OAAI

Kim, Sun; Kim, Won; Wei, Chih-Hsuan; Lu, Zhiyong; Wilbur, W. John

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Research Directions