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Alexey M. Kozlov

Heidelberg Institute for Theoretical Studies

27H-index
74Paper Count
1.3WCitation Count
Published Papers 14
Publication Date
CellPhy: accurate and fast probabilistic inference of single-cell phylogenies from scDNA-seq data
err2022-01-26
err31
errOAAI
errKozlov, Alexey; Alves, Joao M.; Stamatakis, Alexandros; Posada, David
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Phylogenetic Analysis of SARS-CoV-2 Data Is Difficult
err2020-12-15
err92
errOAAI
errMorel, Benoit; Barbera, Pierre; Czech, Lucas; Bettisworth, Ben; Huebner, Lukas; Lutteropp, Sarah; Serdari, Dora; Kostaki, Evangelia-Georgia; Mamais, Ioannis; Kozlov, Alexey M.; Pavlidis, Pavlos; Paraskevis, Dimitrios; Stamatakis, Alexandros
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Eleven grand challenges in single-cell data science
err2020-02-07
err733
errOAAI
errLaehnemann, David; Koester, Johannes; Szczurek, Ewa; McCarthy, Davis J.; Hicks, Stephanie C.; Robinson, Mark D.; Vallejos, Catalina A.; Campbell, Kieran R.; Beerenwinkel, Niko; Mahfouz, Ahmed; Pinello, Luca; Skums, Pavel; Stamatakis, Alexandros; Attolini, Camille Stephan-Otto; Aparicio, Samuel; Baaijens, Jasmijn; Balvert, Marleen; de Barbanson, Buys; Cappuccio, Antonio; Corleone, Giacomo; Dutilh, Bas E.; Florescu, Maria; Guryev, Victor; Holmer, Rens; Jahn, Katharina; Lobo, Thamar Jessurun; Keizer, Emma M.; Khatri, Indu; Kielbasa, Szymon M.; Korbel, Jan O.; Kozlov, Alexey M.; Kuo, Tzu-Hao; Lelieveldt, Boudewijn P. F.; Mandoiu, Ion I.; Marioni, John C.; Marschall, Tobias; Moelder, Felix; Niknejad, Amir; Raczkowski, Lukasz; Reinders, Marcel; de Ridder, Jeroen; Saliba, Antoine-Emmanuel; Somarakis, Antonios; Stegle, Oliver; Theis, Fabian J.; Yang, Huan; Zelikovsky, Alex; McHardy, Alice C.; Raphael, Benjamin J.; Shah, Sohrab P.; Schonhuth, Alexander
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Long-read metabarcoding of the eukaryotic rDNA operon to phylogenetically and taxonomically resolve environmental diversity
err2019-11-29
err70
errOAAI
errJamy, Mahwash; Foster, Rachel; Barbera, Pierre; Czech, Lucas; Kozlov, Alexey; Stamatakis, Alexandros; Bending, Gary; Hilton, Sally; Bass, David; Burki, Fabien
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ModelTest-NG: A New and Scalable Tool for the Selection of DNA and Protein Evolutionary Models
err2019-08-21
err1.2K
errOAAI
errDarriba, Diego; Posada, David; Kozlov, Alexey M.; Stamatakis, Alexandros; Morel, Benoit; Flouri, Tomas
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Modeling Structural Constraints on Protein Evolution via Side-Chain Conformational States
err2019-05-22
err10
errOAAI
errPerron, Umberto; Kozlov, Alexey M.; Stannatakis, Alexandros; Goldman, Nick; Moal, Iain H.
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Phylogenomics and the evolution of hemipteroid insects
err2018-11-26
err269
errOAAI
errJohnson, Kevin P.; Dietrich, Christopher H.; Friedrich, Frank; Beutel, Rolf G.; Wipfler, Benjamin; Peters, Ralph S.; Allen, Julie M.; Petersen, Malte; Donath, Alexander; Walden, Kimberly K. O.; Kozlov, Alexey M.; Podsiadlowski, Lars; Mayer, Christoph; Meusemann, Karen; Vasilikopoulos, Alexandros; Waterhouse, Robert M.; Cameron, Stephen L.; Weirauch, Christiane; Swanson, Daniel R.; Percy, Diana M.; Hardy, Nate B.; Terry, Irene; Liu, Shanlin; Zhou, Xin; Misof, Bernhard; Robertson, Hugh M.; Yoshizawa, Kazunori
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EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences
err2018-09-21
err408
errOAAI
errBarbera, Pierre; Kozlov, Alexey M.; Czech, Lucas; Morel, Benoit; Darriba, Diego; Flouri, Tomas; Stamatakis, Alexandros
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Resolving complex phylogeographic patterns in the Balkan Peninsula using closely related wall-lizard species as a model system
err2018-08-01
err38
PREAI
errPsonis, Nikolaos; Antoniou, Aglaia; Karameta, Emmanouela; Leache, Adam D.; Kotsakiozi, Panayiota; Darriba, Diego; Kozlov, Alexey; Stamatakis, Alexandros; Poursanidis, Dimitris; Kukushkin, Oleg; Jablonski, Daniel; Crnobrnja-Isailovic, Jelka; Gherghel, Iulian; Lymberakis, Petros; Poulakakis, Nikos
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Transcriptome sequence-based phylogeny of chalcidoid wasps (Hymenoptera: Chalcidoidea) reveals a history of rapid radiations, convergence, and evolutionary success
err2018-03-01
err85
PREAI
errPeters, Ralph S.; Niehuis, Oliver; Gunkel, Simon; Blaeser, Marcel; Mayer, Christoph; Podsiadlowski, Lars; Kozlov, Alexey; Donath, Alexander; van Noort, Simon; Liu, Shanlin; Zhou, Xin; Misof, Bernhard; Heraty, John; Krogmann, Lars
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Transcriptome and target DNA enrichment sequence data provide new insights into the phylogeny of vespid wasps (Hymenoptera: Aculeata: Vespidae)
err2017-11-01
err90
PREAI
errBank, Sarah; Sann, Manuela; Mayer, Christoph; Meusemann, Karen; Donath, Alexander; Podsiadlowski, Lars; Kozlov, Alexey; Petersen, Malte; Krogmann, Lars; Meier, Rudolf; Rosa, Paolo; Schmitt, Thomas; Wurdack, Mareike; Liu, Shanlin; Zhou, Xin; Misof, Bernhard; Peters, Ralph S.; Niehuis, Oliver
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Evolutionary History of the Hymenoptera
err2017-04-01
err641
errOAAI
errPeters, Ralph S.; Krogmann, Lars; Mayer, Christoph; Donath, Alexander; Gunkel, Simon; Meusemann, Karen; Kozlov, Alexey; Podsiadlowski, Lars; Petersen, Malte; Lanfear, Robert; Diez, Patricia A.; Heraty, John; Kjer, Karl M.; Klopfstein, Seraina; Meier, Rudolf; Polidori, Carlo; Schmitt, Thomas; Liu, Shanlin; Zhou, Xin; Wappler, Torsten; Rust, Jes; Misof, Bernhard; Niehuis, Oliver
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Phylogeny-aware identification and correction of taxonomically mislabeled sequences
err2016-05-10
err73
errOAAI
errKozlov, Alexey M.; Zhang, Jiajie; Yilmaz, Pelin; Gloeckner, Frank Oliver; Stamatakis, Alexandros
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