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O

Oliver Stegle

European Molecular Biology Laboratory

112H-index
512Paper Count
8.9WCitation Count
Published Papers 118
Publication Date
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Interpretation, extrapolation and perturbation of single cells
errNature Reviews Genetics
IF52
err2026-01-02
err0
PREAI
errDaniel Dimitrov; Stefan Schrod; Martin Rohbeck; Oliver Stegle
errShare
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Genetic architecture and mechanisms of host-microbiome interactions from a multi-cohort analysis of outbred laboratory rats
errNature Communications
IF15.7
err2025-12-18
err0
errOAAI
errHélène Tonnelé; Denghui Chen; Felipe Morillo; Jorge Garcia-Calleja; Apurva S. Chitre; Benjamin B. Johnson; Thiago Missfeldt Sanches; Riyan Cheng; Marc Jan Bonder; Antonio Gonzalez; Tomasz Kosciolek; Anthony M. George; Wenyan Han; Katie Holl; Aidan Horvath; Keita Ishiwari; Christopher P. King; Alexander C. Lamparelli; Connor D. Martin; Angel Garcia Martinez; Alesa H. Netzley; Jordan A. Tripi; Tengfei Wang; Elena Bosch; Peter A. Doris; Oliver Stegle; Hao Chen; Shelly B. Flagel; Paul J. Meyer; Jerry B. Richards; Terry E. Robinson; Leah C. Solberg Woods; Oksana Polesskaya; Rob Knight; Abraham A. Palmer; Amelie Baud
errShare
errSave
Escape from X inactivation is directly modulated by Xist noncoding RNA
errNature Cell Biology
IF19.1
err2025-12-15
err0
errOAAI
errAntonia Hauth; Jasper Panten; Emma Kneuss; Christel Picard; Nicolas Servant; Isabell Rall; Yuvia A. Pérez-Rico; Lena Clerquin; Nila Servaas; Laura Villacorta; Ferris Jung; Christy Luong; Howard Y. Chang; Judith B. Zaugg; Oliver Stegle; Duncan T. Odom; Edith Heard; Agnese Loda
errShare
errSave
Germany’s national genomDE strategy
errNature Medicine
IF50
err2025-10-15
err0
PREAI
errAndreas Till; Roman A. Siddiqui; Christian Altbürger; Ronald Schwarz; Tatjana Huebner; Jürgen Wolf; Dorothee Andres; Anika Anker; Stefan Aretz; Tobias B. Haack; Thomas Berlage; Dieter Beule; Melanie Boerries; Ivo Buchhalter; Jens Bussmann; Christoph Engel; Juliane Friedrichs; Stefan Fröhling; Britta Haenisch; Andrea Hahne; Daniel Hübschmann; Friedrich von Kessel; Rudolf Klatt; Simon Kreutzfeldt; Anna Kron; Heiko Krude; Anna Lübbe; Uwe Lührig; Nisar Malek; Christian Mertes; Yvonne Möller; Christine Mundlos; Markus M. Nöthen; Stephan Ossowski; Luca Pötschke; Anna Rasokat; Olaf Riess; Sophia Schade; Peter Schirmacher; Rita Schmutzler; Catharina Scholl; Sebastian C. Semler; Malte Spielmann; Oliver Stegle; Albrecht Stenzinger; Jana Straßburger; Evelin Schröck; Michael Krawczak; Oliver Kohlbacher
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Integrative analysis of blood biomarkers and clinical variables improves early detection of aggressive prostate cancer
errSCIENTIFIC REPORTS
IF3.9
err2025-04-23
err0
errOAAI
errLazareva, Olga; Riediger, Anja; Stegle, Oliver; Sueltmann, Holger; Hohenfellner, Markus; Goertz, Magdalena
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errSave
HIPSD&R-seq enables scalable genomic copy number and transcriptome profiling
errGENOME BIOLOGY
IF9.4
err2024-12-18
err0
errOAAI
errOtonicar, Jan; Lazareva, Olga; Mallm, Jan-Philipp; Simovic-Lorenz, Milena; Philippos, George; Sant, Pooja; Parekh, Urja; Hammann, Linda; Li, Albert; Yildiz, Umut; Marttinen, Mikael; Zaugg, Judith; Noh, Kyung Min; Stegle, Oliver; Ernst, Aurelie
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errSave
Spatio-temporal transcriptomics of chromothriptic SHH-medulloblastoma identifies multiple genetic clones that resist treatment and drive relapse
errNATURE COMMUNICATIONS
IF15.7
err2024-11-29
err0
errOAAI
errKats, Ilia; Simovic-Lorenz, Milena; Schreiber, Hannah Sophia; Sant, Pooja; Mallm, Jan-Philipp; Korber, Verena; Li, Albert; Velmurugan, Pravin; Heuer, Sophie; Kuees, Luisa; Devens, Frauke; Sill, Martin; Jugold, Manfred; Moustafa, Mahmoud; Abdollahi, Amir; Winkler, Frank; Korshunov, Andrey; Pfister, Stefan M.; Stegle, Oliver; Ernst, Aurelie
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errSave
Integration of variant annotations using deep set networks boosts rare variant association testing
errNATURE GENETICS
IF31.8
err2024-09-25
err0
errOAAI
errClarke, Brian; Holtkamp, Eva; Oeztuerk, Hakime; Mueck, Marcel; Wahlberg, Magnus; Meyer, Kayla; Munzlinger, Felix; Brechtmann, Felix; Hoelzlwimmer, Florian R.; Lindner, Jonas; Chen, Zhifen; Gagneur, Julien; Stegle, Oliver
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errSave
scEpiAge: an age predictor highlighting single-cell ageing heterogeneity in mouse blood
errNATURE COMMUNICATIONS
IF15.7
err2024-08-31
err0
errOAAI
errBonder, Marc Jan; Clark, Stephen J.; Krueger, Felix; Luo, Siyuan; de Sousa, Joao Agostinho; Hashtroud, Aida M.; Stubbs, Thomas M.; Stark, Anne-Katrien; Rulands, Steffen; Stegle, Oliver; Reik, Wolf; von Meyenn, Ferdinand
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errSave
Robust analysis of allele-specific copy number alterations from scRNA-seq data with XClone
errNATURE COMMUNICATIONS
IF15.7
err2024-08-06
err0
errOAAI
errHuang, Rongting; Huang, Xianjie; Tong, Yin; Yan, Helen Y. N.; Leung, Suet Yi; Stegle, Oliver; Huang, Yuanhua
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errSave
SpatialData: an open and universal data framework for spatial omics
errNATURE METHODS
IF32.1
err2024-03-20
err15
errOAAI
errMarconato, Luca; Palla, Giovanni; Yamauchi, Kevin A.; Virshup, Isaac; Heidari, Elyas; Treis, Tim; Vierdag, Wouter-Michiel; Toth, Marcella; Stockhaus, Sonja; Shrestha, Rahul B.; Rombaut, Benjamin; Pollaris, Lotte; Lehner, Laurens; Voehringer, Harald; Kats, Ilia; Saeys, Yvan; Saka, Sinem K.; Huber, Wolfgang; Gerstung, Moritz; Moore, Josh; Theis, Fabian J.; Stegle, Oliver
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errSave
The dynamic genetic determinants of increased transcriptional divergence in spermatids
errNATURE COMMUNICATIONS
IF15.7
err2024-02-10
err0
errOAAI
errPanten, Jasper; Heinen, Tobias; Ernst, Christina; Eling, Nils; Wagner, Rebecca E.; Satorius, Maja; Marioni, John C.; Stegle, Oliver; Odom, Duncan T.
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errSave
UNCAN.eu: Toward a European Federated Cancer Research Data Hub
errCANCER DISCOVERY
IF33.3
err2024-01-12
err1
errOAAI
errBoutros, Michael; Baumann, Michael; Bigas, Anna; Chaabane, Linda; Guerin, Julien; Habermann, Jens K.; Jobard, Aurelien; Pelicci, Pier Giuseppe; Stegle, Oliver; Tonon, Giovanni; Valencia, Alfonso; Winkler, Eva C.; Blanc, Patricia; De Maria, Ruggero; Medema, Rene H.; Nagy, Peter; Tabernero, Josep; Solary, Eric
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errSave
Expression profiling of cerebrospinal fluid identifies dysregulated antiviral mechanisms in multiple sclerosis
errBRAIN
IF11.7
err2023-12-01
err3
errOAAI
errBan, Maria; Bredikhin, Danila; Huang, Yuanhua; Bonder, Marc Jan; Katarzyna, Kania; Oliver, Amanda J.; Wilson, Nicola K.; Coupland, Paul; Hadfield, James; Goettgens, Berthold; Madissoon, Elo; Stegle, Oliver; Sawcer, Stephen
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errSave
Aged intestinal stem cells propagate cell-intrinsic sources of inflammaging in mice
errDEVELOPMENTAL CELL
IF8.7
err2023-12-01
err9
errOAAI
errFunk, Maja C.; Gleixner, Jan G.; Heigwer, Florian; Vonficht, Dominik; Valentini, Erica; Aydin, Zeynep; Tonin, Elena; Del Prete, Stefania; Mahara, Sylvia; Throm, Yannick; Hetzer, Jenny; Heide, Danijela; Stegle, Oliver; Odom, Duncan T.; Feldmann, Angelika; Haas, Simon; Heikenwalder, Mathias; Boutros, Michael
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errSave
Principles and challenges of modeling temporal and spatial omics data
errNATURE METHODS
IF32.1
err2023-09-14
err20
PREAI
errVelten, Britta; Stegle, Oliver
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errSave
A genome-wide association study of blood cell morphology identifies cellular proteins implicated in disease aetiology
errNATURE COMMUNICATIONS
IF15.7
err2023-08-18
err5
errOAAI
errAkbari, Parsa; Vuckovic, Dragana; Stefanucci, Luca; Jiang, Tao; Kundu, Kousik; Kreuzhuber, Roman; Bao, Erik L.; Collins, Janine H.; Downes, Kate; Grassi, Luigi; Guerrero, Jose A.; Kaptoge, Stephen; Knight, Julian C.; Meacham, Stuart; Sambrook, Jennifer; Seyres, Denis; Stegle, Oliver; Verboon, Jeffrey M.; Walter, Klaudia; Watkins, Nicholas A.; Danesh, John; Roberts, David J.; Di Angelantonio, Emanuele; Sankaran, Vijay G.; Frontini, Mattia; Burgess, Stephen; Kuijpers, Taco; Peters, James E.; Butterworth, Adam S.; Ouwehand, Willem H.; Soranzo, Nicole; Astle, William J.
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Mutation-Attention (MuAt): deep representation learning of somatic mutations for tumour typing and subtyping
errGENOME MEDICINE
IF11.2
err2023-07-07
err9
errOAAI
errSanjaya, Prima; Maljanen, Katri; Katainen, Riku; Waszak, Sebastian A.; Aaltonen, Lauri O.; Stegle, Oliver; Korbel, Jan; Pitkaenen, Esa
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errSave
Mapping interindividual dynamics of innate immune response at single-cell resolution
errNATURE GENETICS
IF31.8
err2023-06-12
err9
errOAAI
errKumasaka, Natsuhiko; Rostom, Raghd; Huang, Ni; Polanski, Krzysztof; Meyer, Kerstin B.; Patel, Sharad; Boyd, Rachel; Gomez, Celine; Barnett, Sam N.; Panousis, Nikolaos, I; Schwartzentruber, Jeremy; Ghoussaini, Maya; Lyons, Paul A.; Calero-Nieto, Fernando J.; Gottgens, Berthold; Barnes, Josephine L.; Worlock, Kaylee B.; Yoshida, Masahiro; Nikolic, Marko Z.; Stephenson, Emily; Reynolds, Gary; Haniffa, Muzlifah; Marioni, John C.; Stegle, Oliver; Hagai, Tzachi; Teichmann, Sarah A.
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errSave
pycoMeth: a toolbox for differential methylation testing from Nanopore methylation calls
errGENOME BIOLOGY
IF9.4
err2023-04-20
err4
errOAAI
errSnajder, Rene; Leger, Adrien; Stegle, Oliver; Bonder, Marc Jan
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
G
George Davey Smith
H-index: 276 · Papers: 4.3K
C
Cornelia M. van Duijn
H-index: 238 · Papers: 1.9K
H
Hans Clevers
H-index: 236 · Papers: 1.3K
A
André G. Uitterlinden
H-index: 234 · Papers: 2.0K
M
Matthew Meyerson
H-index: 223 · Papers: 1.9K
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