arrow
Back
J

John Wooley

University of California System

34H-index
266Paper Count
6.5KCitation Count
Published Papers 63
Publication Date
Ultrafast clustering algorithms for metagenomic sequence analysis
err2012-07-06
err406
errOAAI
errLi, Weizhong; Fu, Limin; Niu, Beifang; Wu, Sitao; Wooley, John
errShare
errSave
Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource
err2010-11-02
err264
errOAAI
errSun, Shulei; Chen, Jing; Li, Weizhong; Altintas, Ilkay; Lin, Abel; Peltier, Steve; Stocks, Karen; Allen, Eric E.; Ellisman, Mark; Grethe, Jeffrey; Wooley, John
errShare
errSave
TOPSAN: a dynamic web database for structural genomics
err2010-10-20
err15
errOAAI
errEllrott, Kyle; Zmasek, Christian M.; Weekes, Dana; Krishna, S. Sri; Bakolitsa, Constantina; Godzik, Adam; Wooley, John
errShare
errSave
Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families
err2010-06-03
err59
errOAAI
errEllrott, Kyle; Jaroszewski, Lukasz; Li, Weizhong; Wooley, John C.; Godzik, Adam
errShare
errSave
Structural and Functional Characterizations of SsgB, a Conserved Activator of Developmental Cell Division in Morphologically Complex Actinomycetes
err2009-09-01
err32
errOAAI
errXu, Qingping; Traag, Bjorn A.; Willemse, Joost; McMullan, Daniel; Miller, Mitchell D.; Elsliger, Marc-Andre; Abdubek, Polat; Astakhova, Tamara; Axelrod, Herbert L.; Bakolitsa, Constantina; Carlton, Dennis; Chen, Connie; Chiu, Hsiu-Ju; Chruszcz, Maksymilian; Clayton, Thomas; Das, Debanu; Deller, Marc C.; Duan, Lian; Ellrott, Kyle; Ernst, Dustin; Farr, Carol L.; Feuerhelm, Julie; Grant, Joanna C.; Grzechnik, Anna; Grzechnik, Slawomir K.; Han, Gye Won; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Kozbial, Piotr; Krishna, S. Sri; Kumar, Abhinav; Marciano, David; Minor, Wladek; Mommaas, A. Mieke; Morse, Andrew T.; Nigoghossian, Edward; Nopakun, Amanda; Okach, Linda; Oommachen, Silvya; Paulsen, Jessica; Puckett, Christina; Reyes, Ron; Rife, Christopher L.; Sefcovic, Natasha; Tien, Henry J.; Trame, Christine B.; van den Bedem, Henry; Wang, Shuren; Weekes, Dana; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.; van Wezel, Gilles P.
errShare
errSave
Crystal structure of the Fic (Filamentation Induced by cAMP) family protein SO4266 (gi|24375750) from Shewanella oneidensis MR-1 at 1.6 Å resolution
err2009-01-29
err22
errOAAI
errDas, Debanu; Krishna, S. Sri; McMullan, Daniel; Miller, Mitchell D.; Xu, Qingping; Abdubek, Polat; Acosta, Claire; Astakhova, Tamara; Axelrod, Herbert L.; Burra, Prasad; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; Deller, Marc C.; Duan, Lian; Elias, Ylva; Elsliger, Marc-Andre; Ernst, Dustin; Feuerhelm, Julie; Grzechnik, Anna; Grzechnik, Slawomir K.; Hale, Joanna; Han, Gye Won; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Kozbial, Piotr; Kumar, Abhinav; Marciano, David; Morse, Andrew T.; Murphy, Kevin D.; Nigoghossian, Edward; Okach, Linda; Oommachen, Silvya; Paulsen, Jessica; Reyes, Ron; Rife, Christopher L.; Sefcovic, Natasha; Tien, Henry; Trame, Christine B.; Trout, Christina V.; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.
errShare
errSave
Crystal structure of a novel Sm-like protein of putative cyanophage origin at 2.60 Å resolution
err2009-01-27
err17
errOAAI
errDas, Debanu; Kozbial, Piotr; Axelrod, Herbert L.; Miller, Mitchell D.; McMullan, Daniel; Krishna, S. Sri; Abdubek, Polat; Acosta, Claire; Astakbova, Tamara; Burra, Prasad; Carlton, Dennis; Chen, Connie; Chiu, Hsiu-Ju; Clayton, Thomas; Deller, Marc C.; Duan, Lian; Elias, Ylva; Elsliger, Marc-Andre; Ernst, Dustin; Farr, Carol; Feuerhelm, Julie; Grzechnik, Anna; Grzechnik, Slawomir K.; Hale, Joanna; Han, Gye Won; Jaroszewski, Lukasz; Jin, Kevin K.; Johnson, Hope A.; Klock, Heath E.; Knuth, Mark W.; Kumar, Abhinav; Marciano, David; Morse, Andrew T.; Murphy, Kevin D.; Nigoghossian, Edward; Nopakun, Amanda; Okach, Linda; Oommachen, Silvya; Paulsen, Jessica; Puckett, Christina; Reyes, Ron; Rife, Christopher L.; Sefcovic, Natasha; Sudek, Sebastian; Tien, Henry; Trame, Christine; Trout, Christina V.; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Xu, Qingping; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.
errShare
errSave
Crystal structure of a novel archaeal AAA plus ATPase SSO 1545 from Sulfolobus solfataricus
err2008-12-16
err9
errOAAI
errXu, Qingping; Rife, Christopher L.; Carlton, Dennis; Miller, Mitchell D.; Krishna, S. Sri; Elsliger, Marc-Andre; Abdubek, Polat; Astakhova, Tamara; Chiu, Hsiu-Ju; Clayton, Thomas; Duan, Lian; Feuerhelm, Julie; Grzechnik, Slawomir K.; Hale, Joanna; Han, Gye Won; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Kumar, Abhinav; McMullan, Daniel; Morse, Andrew T.; Nigoghossian, Edward; Okach, Linda; Oommachen, Silvya; Paulsen, Jessica; Reyes, Ron; van den Bedem, Henry; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.
errShare
errSave
Crystal structures of MW1337R and lin2004: Representatives of a novel protein family that adopt a four-helical bundle fold
err2008-03-06
err3
PREAI
errKozbial, Piotr; Xu, Qingping; Chiu, Hsiu-Ju; McMullan, Daniel; Krishna, S. Sri; Miller, Mitchell D.; Abdubek, Polat; Acosta, Claire; Astakhova, Tamara; Axelrod, Herbert L.; Carlton, Dennis; Clayton, Thomas; Deller, Marc; Duan, Lian; Elias, Ylva; Elsliger, Marc-Andre; Feuerhelm, Julie; Grzechnik, Slawomir K.; Hale, Joanna; Han, Gye Won; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Koesema, Eric; Kumar, Abhinav; Marciano, David; Morse, Andrew T.; Murphy, Kevin D.; Nigoghossian, Edward; Okach, Linda; Oommachen, Silvya; Reyes, Ron; Rife, Christopher L.; Spraggon, Glen; Trout, Christina V.; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Wolf, Guenter; Zubieta, Chloe; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; WilSon, Ian A.
errShare
errSave
Crystal structure of an ADP-ribosylated protein with a cytidine deaminase-like fold, but unknown function (TM1506), from Thermotoga maritima at 2.70 Å resolution
err2008-02-14
err7
errOAAI
errXu, Qingping; Kozbial, Piotr; McMullan, Daniel; Krishna, S. Sri; Brittain, Scott M.; Ficarro, Scott B.; DiDonato, Michael; Miller, Mitchell D.; Abdubek, Polat; Axelrod, Herbert L.; Chiu, Hsiu-Ju; Clayton, Thomas; Duan, Lian; Elsliger, Marc-Andre; Feuerhelm, Julie; Grzechnik, Slawomir K.; Hale, Joanna; Han, Gye Won; Jaroszewski, Lukasz; Klock, Heath E.; Morse, Andrew T.; Nigoghossian, Edward; Paulsen, Jessica; Reyes, Ron; Rife, Christopher L.; van den Bedem, Henry; White, Aprilfawn; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.
errShare
errSave
Crystal structure of AICAR transformylase IMP cyclohydrolase (TM1249) from Thermotoga maritima at 1.88 Å resolution
err2008-02-07
err9
errOAAI
errAxelrod, Herbert L.; McMullan, Daniel; Krishna, S. Sri; Miller, Mitchell D.; Elsliger, Marc-Andre; Abdubek, Polat; Ambing, Eileen; Astakhova, Tamara; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; Duan, Lian; Feuerhelm, Julie; Grzechnik, Slawomir K.; Hale, Joanna; Han, Gye Won; Haugen, Justin; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Koesema, Eric; Morse, Andrew T.; Nigoghossian, Edward; Okach, Linda; Oommachen, Silvya; Paulsen, Jessica; Quijano, Kevin; Reyes, Ron; Rife, Christopher L.; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Wolf, Guenter; Xu, Qingping; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.
errShare
errSave
Crystal structure of 2-keto-3-deoxygluconate kinase (TM0067) from Thermotoga maritima at 2.05 Å resolution
err2007-11-14
err8
errOAAI
errMathews, Irimpan I.; McMullan, Daniel; Miller, Mitchell D.; Canaves, Jaume M.; Elsliger, Marc-Andre; Floyd, Ross; Grzechnik, Slawomir K.; Jaroszewski, Lukasz; Klock, Heath E.; Koesema, Eric; Kovarik, John S.; Kreusch, Andreas; Kuhn, Peter; McPhillips, Timothy M.; Morse, Andrew T.; Quijano, Kevin; Rife, Christopher L.; Schwarzenbacher, Robert; Spraggon, Glen; Stevens, Raymond C.; van den Bedem, Henry; Weekes, Dana; Wolf, Guenter; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.
errShare
errSave
Crystal structure of MtnX phosphatase from Bacillus subtilis at 2.0 Å resolution provides a structural basis for bipartite phosphomonoester hydrolysis of 2-hydroxy3-keto-5-methylthiopentenyl-1-phosphate
err2007-07-25
err7
PREAI
errXu, Qingping; Saikatendu, Kumar Singh; Krishna, S. Sri; McMullan, Daniel; Abdubek, Polat; Agarwalla, Sanjay; Ambing, Eileen; Astakhova, Tamara; Axelrod, Herbert L.; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; DiDonato, Michael; Duan, Lian; Elsliger, Marc-Andr; Feuerhelm, Julie; Grzechnik, Slawomir K.; Hale, Joanna; Hampton, Eric; Han, Gye Won; Haugen, Justin; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Koesema, Eric; Miller, Mitchell D.; Morse, Andrew T.; Nigoghossian, Edward; Mach, Linda; Oommachen, Silvya; Paulsen, Jessica; Reyes, Ron; Rife, Christopher L.; Schwarzenbacher, Robert; van den Bedem, Henry; White, Aprilfawn; Wolf, Guenter; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.
errShare
errSave
Identification and structural characterization of heme binding in a novel dye-decolorizing peroxidase, TyrA
err2007-07-24
err75
PREAI
errZubieta, Chloe; Joseph, Rosanne; Krishna, S. Sri; McMullan, Daniel; Kapoor, Milli; Axelrod, Herbert L.; Miller, Mitchell D.; Abdubek, Polat; Acosta, Claire; Astakhova, Tamara; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; Deller, Marc C.; Duan, Lian; Elias, Ylva; Elsliger, Marc-Andre; Feuerhelm, Julie; Grzechnik, Slawomir K.; Hale, Joanna; Han, Gye Won; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Kozbial, Piotr; Kumar, Abhinav; Marciano, David; Morse, Andrew T.; Murphy, Kevin D.; Nigoghossian, Edward; Okach, Linda; Oommachen, Silvya; Reyes, Ron; Rife, Christopher L.; Schimmel, Paul; Trout, Christina V.; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Xu, Qingping; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.
errShare
errSave
Crystal structures of two novel dye-decolorizing peroxidases reveal a β-barrel fold with a conserved heme-binding motif
err2007-07-24
err92
PREAI
errZubieta, Chloe; Krishna, S. Sri; Kapoor, Mili; Kozbial, Piotr; McMullan, Daniel; Axelrod, Herbert L.; Miller, Mitchell D.; Abdubek, Polat; Ambing, Eileen; Astakhova, Tamara; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; Deller, Marc C.; Duan, Lian; Elsliger, Marc-Andre; Feuerhelm, Julie; Grzechnik, Slawomir K.; Hale, Joanna; Hampton, Eric; Han, Gye Won; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Kumar, Abhinav; Marciano, David; Morse, Andrew T.; Nigoghossian, Edward; Mach, Linda; Oommachen, Silvya; Reyes, Ron; Rife, Christopher L.; Schimmel, Paul; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Xu, Qingping; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.
errShare
errSave
Crystal structure of NMA1982 from Neisseria meningitidis at 1.5 Å resolution provides a structural scaffold for nonclassical, eukaryotic-like phosphatases
err2007-07-16
err10
PREAI
errKrishna, S. Sri; Tautz, Lutz; Xu, Qingping; McMullan, Daniel; Miller, Mitchell D.; Abdubek, Polat; Ambing, Eileen; Astakhova, Tamara; Axelrod, Herbert L.; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; DiDonato, Michael; Duan, Lian; Elsliger, Marc-Andre; Grzechnik, Slawomir K.; Hale, Joanna; Hampton, Eric; Han, Gye Won; Haugen, Justin; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Koesema, Eric; Morse, Andrew T.; Mustelin, Tomas; Nigoghossian, Edward; Oommachen, Silvya; Reyes, Ron; Rife, Christopher L.; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.
errShare
errSave
Crystal structure of homoserine O-succinyltransferase from Bacillus cereus at 2.4 Å resolution
err2007-06-01
err14
errOAAI
errZubieta, Chloe; Krishna, S. Sri; McMullan, Daniel; Miller, Mitchell D.; Abdubek, Polat; Agarwalla, Sanjay; Ambing, Eileen; Astakhova, Tamara; Axelrod, Herbert L.; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; Deller, Marc; DiDonato, Michael; Duan, Lian; Elsliger, Marc-Andre; Grzechnik, Slawomir K.; Hale, Joanna; Hampton, Eric; Han, Gye Won; Haugen, Justin; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Koesema, Eric; Kumar, Abhinav; Marciano, David; Morse, Andrew T.; Nigoghossian, Edward; Oommachen, Silvya; Reyes, Ron; Rife, Christopher L.; van den Bedem, Henry; Weekes, Dana; White, Aprilfawn; Xu, Qingping; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.
errShare
errSave
Crystal structure of TM1030 from Thermotoga maritima at 2.3 Å resolution reveals molecular details of its transcription repressor function
err2007-04-19
err5
errOAAI
errPremkumar, Lakshmanane; Rife, Christopher L.; Krishna, S. Sri; McMullan, Daniel; Miller, Mitchell D.; Abdubek, Polat; Ambing, Eileen; Astakhova, Tamara; Axelrod, Herbert L.; Canaves, Jaume M.; Carlton, Dennis; Chiu, Hsiu-Ju; Clayton, Thomas; DiDonato, Michael; Duan, Lian; Elsliger, Marc-Andre; Feuerhelm, Julie; Floyd, Ross; Grzechnik, Slawomir K.; Hale, Joanna; Hampton, Eric; Han, Gye Won; Haugen, Justin; Jaroszewski, Lukasz; Jin, Kevin K.; Klock, Heath E.; Knuth, Mark W.; Koesema, Eric; Kovarik, John S.; Kreusch, Andreas; Levin, Inna; McPhillips, Timothy M.; Morse, Andrew T.; Nigoghossian, Edward; Okach, Linda; Oommachen, Silvya; Paulsen, Jessica; Quijano, Kevin; Reyes, Ron; Rezezadeh, Fred; Rodionov, Dmitry; Schwarzenbacher, Robert; Spraggon, Glen; van den Bedem, Henry; White, Aprilfawn; Wolf, Guenter; Xu, Qingping; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.
errShare
errSave
Crystal structure of a transcription regulator (TM1602) from Thermotoga maritima at 2.3 Å resolution
err2007-01-26
err9
errOAAI
errWeekes, Dana; Miller, Mitchell D.; Krishna, S. Sri; McMullan, Daniel; McPhillips, Timothy M.; Acosta, Claire; Canaves, Jaume M.; Elsliger, Marc-Andre; Floyd, Ross; Grzechnik, Slawomir K.; Jaroszewski, Lukasz; Klock, Heath E.; Koesema, Eric; Kovarik, John S.; Kreusch, Andreas; Morse, Andrew T.; Quijano, Kevin; Spraggon, Glen; van den Bedem, Henry; Wolf, Guenter; Hodgson, Keith O.; Wooley, John; Deacon, Ashley M.; Godzik, Adam; Lesley, Scott A.; Wilson, Ian A.
errShare
errSave