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Matthew L Speir

University of California System

19H-index
28Paper Count
7.5KCitation Count
Published Papers 16
Publication Date
The UCSC Genome Browser database: 2026 update
err2025-11-01
err1
errOAAI
errCasper, Jonathan; Speir, Matthew L.; Raney, Brian J.; Perez, Gerardo; Nassar, Luis R.; Lee, Christopher M.; Hinrichs, Angie S.; Gonzalez, Jairo Navarro; Fischer, Clay; Diekhans, Mark; Clawson, Hiram; Benet-Pages, Anna; Barber, Galt P.; Vaske, Charles J.; Van baren, Marijke J.; Wang, Karen; Rodriguez, Yesenia Joanna Puga; Jenkins-Kiefer, Jaidan Ashlyn; Chalamala, Megna; Haussler, David; Kent, William James; Haeussler, Maximilian
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The UCSC Genome Browser database: 2025 update
err2024-10-26
err1
errOAAI
errPerez, Gerardo; Barber, Galt P.; Benet-Pages, Anna; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Fischer, Clay; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Christopher M.; Nassar, Luis R.; Raney, Brian J.; Speir, Matthew L.; van Baren, Marijke J.; Vaske, Charles J.; Haussler, David; Kent, W. James; Haeussler, Maximilian
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The UCSC Genome Browser database: 2024 update
err2023-11-11
err44
errOAAI
errRaney, Brian J.; Barber, Galt P.; Benet-Pages, Anna; Casper, Jonathan; Clawson, Hiram; Cline, Melissa S.; Diekhans, Mark; Fischer, Clayton; Gonzalez, Jairo Navarro; Hickey, Glenn; Hinrichs, Angie S.; Kuhn, Robert M.; Lee, Brian T.; Lee, Christopher M.; Le Mercier, Phillipe; Miga, KarenH; Nassar, Luis R.; Nejad, Parisa; Paten, Benedict; Perez, Gerardo; Schmelter, Daniel; Speir, Matthew L.; Wick, Brittney D.; Zweig, Ann S.; Haussler, David; Kent, W. James; Haeussler, Maximilian
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GenArk: towards a million UCSC genome browsers
err2023-10-02
err3
errOAAI
errClawson, Hiram; Lee, Brian T.; Raney, Brian J.; Barber, Galt P.; Casper, Jonathan; Diekhans, Mark; Fischer, Clay; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Christopher M.; Nassar, Luis R.; Perez, Gerardo; Wick, Brittney; Schmelter, Daniel; Speir, Matthew L.; Armstrong, Joel; Zweig, Ann S.; Kuhn, Robert M.; Kirilenko, Bogdan M.; Hiller, Michael; Haussler, David; Kent, W. James; Haeussler, Maximilian
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The UCSC Genome Browser database: 2023 update
err2022-11-24
err202
errOAAI
errNassar, Luis R.; Barber, Galt P.; Benet-Pages, Anna; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Fischer, Clay; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Brian T.; Lee, Christopher M.; Muthuraman, Pranav; Nguy, Beagan; Pereira, Tiana; Nejad, Parisa; Perez, Gerardo; Raney, Brian J.; Schmelter, Daniel; Speir, Matthew L.; Wick, Brittney D.; Zweig, Ann S.; Haussler, David; Kuhn, Robert M.; Haeussler, Maximilian; Kent, W. James
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Human microglia states are conserved across experimental models and regulate neural stem cell responses in chimeric organoids
err2021-12-01
err106
errOAAI
errPopova, Galina; Soliman, Sarah S.; Kim, Chang N.; Keefe, Matthew G.; Hennick, Kelsey M.; Jain, Samhita; Li, Tao; Tejera, Dario; Shin, David; Chhun, Bryant B.; McGinnis, Christopher S.; Speir, Matthew; Gartner, Zev J.; Mehta, Shalin B.; Haeussler, Maximilian; Hengen, Keith B.; Ransohoff, Richard R.; Piao, Xianhua; Nowakowski, Tomasz J.
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The UCSC Genome Browser database: 2022 update
err2021-10-28
err162
errOAAI
errLee, Brian T.; Barber, Galt P.; Benet-Pages, Anna; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Fischer, Clay; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Christopher M.; Muthuraman, Pranav; Nassar, Luis R.; Nguy, Beagan; Pereira, Tiana; Perez, Gerardo; Raney, Brian J.; Rosenbloom, Kate R.; Schmelter, Daniel; Speir, Matthew L.; Wick, Brittney D.; Zweig, Ann S.; Haussler, David; Kuhn, Robert M.; Haeussler, Maximilian; Kent, W. James
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Modeling Human TBX5 Haploinsufficiency Predicts Regulatory Networks for Congenital Heart Disease
err2021-02-01
err61
errOAAI
errKathiriya, Irfan S.; Rao, Kavitha S.; Iacono, Giovanni; Devine, W. Patrick; Blair, Andrew P.; Hota, Swetansu K.; Lai, Michael H.; Garay, Bayardo, I; Thomas, Reuben; Gong, Henry Z.; Wasson, Lauren K.; Goyal, Piyush; Sukonnik, Tatyana; Hu, Kevin M.; Akgun, Gunes A.; Bernard, Laure D.; Akerberg, Brynn N.; Gu, Fei; Li, Kai; Speir, Matthew L.; Haeussler, Maximilian; Pu, William T.; Stuart, Joshua M.; Seidman, Christine E.; Seidman, J. G.; Heyn, Holger; Bruneau, Benoit G.
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The UCSC Genome Browser database: 2021 update
err2020-11-22
err321
errOAAI
errGonzalez, Jairo Navarro; Zweig, Ann S.; Speir, Matthew L.; Schmelter, Daniel; Rosenbloom, Kate R.; Raney, Brian J.; Powell, Conner C.; Nassar, Luis R.; Maulding, Nathan D.; Lee, Christopher M.; Lee, Brian T.; Hinrichs, Angie S.; Fyfe, Alastair C.; Fernandes, Jason D.; Diekhans, Mark; Clawson, Hiram; Casper, Jonathan; Benet-Pages, Anna; Barber, Galt P.; Haussler, David; Kuhn, Robert M.; Haeussler, Maximilian; Kent, W. James
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UCSC Genome Browser enters 20th year
err2019-11-06
err160
errOAAI
errLee, Christopher M.; Barber, Galt P.; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Gonzalez, Jairo Navarro; Hinrichs, Angie S.; Lee, Brian T.; Nassar, Luis R.; Powell, Conner C.; Raney, Brian J.; Rosenbloom, Kate R.; Schmelter, Daniel; Speir, Matthew L.; Zweig, Ann S.; Haussler, David; Haeussler, Maximilian; Kuhn, Robert M.; Kent, W. James
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The UCSC Genome Browser database: 2019 update
err2018-11-08
err592
errOAAI
errHaeussler, Maximilian; Zweig, Ann S.; Tyner, Cath; Speir, Matthew L.; Rosenbloom, Kate R.; Raney, Brian J.; Lee, Christopher M.; Lee, Brian T.; Hinrichs, Angie S.; Gonzalez, Jairo Navarro; Gibson, David; Diekhans, Mark; Clawson, Hiram; Casper, Jonathan; Barber, Galt P.; Haussler, David; Kuhn, Robert M.; Kent, W. James
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The UCSC Genome Browser database: 2018 update
err2017-11-02
err377
errOAAI
errCasper, Jonathan; Zweig, Ann S.; Villarreal, Chris; Tyner, Cath; Speir, Matthew L.; Rosenbloom, Kate R.; Raney, Brian J.; Lee, Christopher M.; Lee, Brian T.; Karolchik, Donna; Hinrichs, Angie S.; Haeussler, Maximilian; Guruvadoo, Luvina; Gonzalez, Jairo Navarro; Gibson, David; Fiddes, Ian T.; Eisenhart, Christopher; Diekhans, Mark; Clawson, Hiram; Barber, Galt P.; Armstrong, Joel; Haussler, David; Kuhn, Robert M.; Kent, W. James
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The UCSC Genome Browser database: 2017 update
err2016-01-01
err289
errOAAI
errTyner, Cath; Barber, Galt P.; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Eisenhart, Christopher; Fischer, Clayton M.; Gibson, David; Gonzalez, Jairo Navarro; Guruvadoo, Luvina; Haeussler, Maximilian; Heitner, Steve; Hinrichs, Angie S.; Karolchik, Donna; Lee, Brian T.; Lee, Christopher M.; Nejad, Parisa; Raney, Brian J.; Rosenbloom, Kate R.; Speir, Matthew L.; Villarreal, Chris; Vivian, John; Zweig, Ann S.; Haussler, David; Kuhn, Robert M.; Kent, W. James
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The UCSC Genome Browser database: 2016 update
err2015-11-20
err335
errOAAI
errSpeir, Matthew L.; Zweig, Ann S.; Rosenbloom, Kate R.; Raney, Brian J.; Paten, Benedict; Nejad, Parisa; Lee, Brian T.; Learned, Katrina; Karolchik, Donna; Hinrichs, Angie S.; Heitner, Steve; Harte, Rachel A.; Haeussler, Maximilian; Guruvadoo, Luvina; Fujita, Pauline A.; Eisenhart, Christopher; Diekhans, Mark; Clawson, Hiram; Casper, Jonathan; Barber, Galt P.; Haussler, David; Kuhn, Robert M.; Kent, W. James
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The UCSC Genome Browser database: 2015 update
err2014-11-26
err821
errOAAI
errRosenbloom, Kate R.; Armstrong, Joel; Barber, Galt P.; Casper, Jonathan; Clawson, Hiram; Diekhans, Mark; Dreszer, Timothy R.; Fujita, Pauline A.; Guruvadoo, Luvina; Haeussler, Maximilian; Harte, Rachel A.; Heitner, Steve; Hickey, Glenn; Hinrichs, Angie S.; Hubley, Robert; Karolchik, Donna; Learned, Katrina; Lee, Brian T.; Li, Chin H.; Miga, Karen H.; Nguyen, Ngan; Paten, Benedict; Raney, Brian J.; Smit, Arian F. A.; Speir, Matthew L.; Zweig, Ann S.; Haussler, David; Kuhn, Robert M.; Kent, W. James
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The UCSC Genome Browser database: 2014 update
err2013-11-21
err620
errOAAI
errKarolchik, Donna; Barber, Galt P.; Casper, Jonathan; Clawson, Hiram; Cline, Melissa S.; Diekhans, Mark; Dreszer, Timothy R.; Fujita, Pauline A.; Guruvadoo, Luvina; Haeussler, Maximilian; Harte, Rachel A.; Heitner, Steve; Hinrichs, Angie S.; Learned, Katrina; Lee, Brian T.; Li, Chin H.; Raney, Brian J.; Rhead, Brooke; Rosenbloom, Kate R.; Sloan, Cricket A.; Speir, Matthew L.; Zweig, Ann S.; Haussler, David; Kuhn, Robert M.; Kent, W. James
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