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J

Justin L. Sonnenburg

stanford university school of medicine

78H-index
224Paper Count
3.9WCitation Count
Published Papers 71
Publication Date
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Gut microbiomes of tribal communities in India vary with dairy and grain consumption
errGut Microbes
IF11
err2026-07-09
err0
errOAAI
errEmily R. Ebel; Abhijit Sanjiv Kulkarni; Dattatray S. Mongad; Matthew R. Olm; Sarangthem Indira Devi; Bilal Ahmad Mir; Shantanu Ozarkar; Erica D. Sonnenburg; Yogesh S. Shouche; Justin L. Sonnenburg; Dhiraj P. Dhotre
errShare
errSave
Integration of donor microbiota following FMT correlates with anti-PD-1 response in melanoma
errNature Communications
IF15.7
err2026-05-30
err0
errOAAI
errJessica L. Fessler; Matthew R. Olm; Edgar G. Engleman; Justin L. Sonnenburg
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errSave
Time-specific bidirectional links between the maternal microbiome, milk composition, and infant gut microbiota
errCell Host & Microbe
IF18.7
err2025-12-17
err0
PREAI
errLishi Deng; Kelsey Fehr; Laeticia Celine Toe; Lindsay H. Allen; Lars Bode; Daniela Hampel; Melissa B. Manus; Andrew Mertens; Bianca Robertson; Chloe Yonemitsu; Bruno De Meulenaer; Carl Lachat; Justin L. Sonnenburg; Meghan B. Azad; Trenton Dailey-Chwalibóg
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errSave
Strain-resolved metagenomic analysis and qPCR validation suggest Clostridium cuniculi is the etiologic agent for infectious diarrhea in severely immunodeficient mice
errJOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION
IF1.1
err2025-09-01
err1
errOAAI
errBarouch-Bentov, Rina; Merrill, Bryan D.; Reineking, Wencke; Moorhead, Roberta; Herberg de Alonso, Flavio; Fazel, Minoo; Uzal, Francisco A.; Felt, Stephen A.; Sonnenburg, Justin L.; Casey, Kerriann M.; Nagamine, Claude M.
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errSave
A human milk oligosaccharide alters the microbiome, circulating hormones, and metabolites in a randomized controlled trial of older adults
errCell Reports Medicine
IF10.6
err2025-07-29
err0
errOAAI
errMatthew M. Carter; Diane Demis; Dalia Perelman; Michelle St. Onge; Christina Petlura; Kristen Cunanan; Kavita Mathi; Holden T. Maecker; Jo May Chow; Jennifer L. Robinson; Anice Sabag-Daigle; Erica D. Sonnenburg; Rachael H. Buck; Christopher D. Gardner; Justin L. Sonnenburg
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errSave
Controlled colonization of the human gut with a genetically engineered microbial therapeutic
errScience
IF45.8
err2025-07-17
err0
PREAI
errWeston R. Whitaker; Zachary N. Russ; Elizabeth Stanley Shepherd; Lauren M. Popov; Alexander Louie; Kathy Lam; David M. Zong; Clare C. C. Gill; Jeanette L. Gehrig; Harneet S. Rishi; Jessica A. Tan; Areta Buness; Janeth Godoy; Domenique Banta; Sonia Jaidka; Katheryne Wilson; Jake Flood; Polina Bukshpun; Richard Yocum; David N. Cook; Tariq Warsi; Lachy McLean; Justin L. Sonnenburg; William C. DeLoache
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errSave
Unpacking Food Fermentation: Clinically Relevant Tools for Fermented Food Identification and Consumption
errADVANCES IN NUTRITION
IF9.2
err2025-05-01
err0
errOAAI
errCaffrey, EB; Perelman, D; Ward, CP; Sonnenburg, E; Gardner, C; Sonnenburg, JL
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errSave
The Effects of an Intermittent Reduced Calorie Diet on Crohn's Disease
errJOURNAL OF CROHNS & COLITIS
IF8.7
err2025-01-22
err0
PREAI
errKulkarni, C.; Fardeen, T.; Gubatan, J.; Jarr, K.; Dickson, E.; Jang, H.; Temby, M.; Patel, A.; Singh, G.; Ye, J.; Keyashian, K.; Streett, S.; Ho, E.; Barber, G.; Singh, S.; Limsui, D.; Anaizi, N.; Becker, L.; Spencer, S.; Mehrish, D.; Perelman, D.; Habtezion, A.; Sonnenburg, J.; Gardner, C.; Sinha, S.
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errSave
Describing Biological Vulnerability in Small, Vulnerable Newborns in Urban Burkina Faso (DenBalo): Gut Microbiota, Immune System, and Breastmilk Assembly
errNUTRIENTS
IF5
err2024-12-09
err0
errOAAI
errOuedraogo, Lionel Olivier; Deng, Lishi; Ouattara, Cheick Ahmed; Compaore, Anderson; Ouedraogo, Moctar; Argaw, Alemayehu; Lachat, Carl; Houpt, Eric R.; Saidi, Queen; Haerynck, Filomeen; Sonnenburg, Justin; Azad, Meghan B.; Tavernier, Simon J.; Bastos-Moreira, Yuri; Toe, Laeticia Celine; Dailey-Chwalibog, Trenton
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errSave
Gut microbiome Bifidobacterium is associated with improvement in severity of heart failure with reduced ejection fraction
errCIRCULATION RESEARCH
IF16.2
err2024-08-02
err0
PREAI
errMamic, Petra; Shi, Handuo; Tang, Wai Hong; Sonnenburg, Justin; Khush, Kiran; Heidenreich, Paul; Huang, Kerwyn; Snyder, Michael
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errSave
Unveiling the epigenetic impact of vegan vs. omnivorous diets on aging: insights from the Twins Nutrition Study (TwiNS)
errBMC MEDICINE
IF8.3
err2024-07-29
err1
errOAAI
errDwaraka, Varun B.; Aronica, Lucia; Carreras-Gallo, Natalia; Robinson, Jennifer L.; Hennings, Tayler; Carter, Matthew M.; Corley, Michael J.; Lin, Aaron; Turner, Logan; Smith, Ryan; Mendez, Tavis L.; Went, Hannah; Ebel, Emily R.; Sonnenburg, Erica D.; Sonnenburg, Justin L.; Gardner, Christopher D.
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errSave
High-throughput identification of gut microbiome-dependent metabolites
errNATURE PROTOCOLS
IF16
err2024-05-13
err1
PREAI
errHan, Shuo; Guiberson, Emma R.; Li, Yuxin; Sonnenburg, Justin L.
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errSave
Our extended microbiome: The human-relevant metabolites and biology of fermented foods
errCELL METABOLISM
IF30.9
err2024-04-01
err5
errOAAI
errCaffrey, Elisa; Sonnenburg, Justin; Devkota, Suzanne
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errSave
Randomly barcoded transposon mutant libraries for gut commensals II: Applying libraries for functional genetics
errCELL REPORTS
IF6.9
err2024-01-01
err4
errOAAI
errVoogdt, Carlos Geert Pieter; Tripathi, Surya; Bassler, Stefan Oliver; McKeithen-Mead, Saria A.; Guiberson, Emma R.; Koumoutsi, Alexandra; Bravo, Afonso Martins; Buie, Cullen; Zimmermann, Michael; Sonnenburg, Justin L.; Typas, Athanasios; Deutschbauer, Adam M.; Shiver, Anthony L.; Huang, Kerwyn Casey
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errSave
Randomized controlled trial demonstrates response to a probiotic intervention for metabolic syndrome that may correspond to diet
errGUT MICROBES
IF11
err2023-02-19
err22
errOAAI
errWastyk, Hannah C.; Perelman, Dalia; Topf, Madeline; Fragiadakis, Gabriela K.; Robinson, Jennifer L.; Sonnenburg, Justin L.; Gardner, Christopher D.; Sonnenburg, Erica D.
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errSave
Host-microbe co-metabolism via MCAD generates circulating metabolites including hippuric acid
errNATURE COMMUNICATIONS
IF15.7
err2023-01-31
err29
errOAAI
errPruss, Kali M.; Chen, Haoqing; Liu, Yuanyuan; Van Treuren, William; Higginbottom, Steven K.; Jarman, John B.; Fischer, Curt R.; Mak, Justin; Wong, Beverly; Cowan, Tina M.; Fischbach, Michael A.; Sonnenburg, Justin L.; Dodd, Dylan
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errSave
A microbiome-targeting fibre-enriched nutritional formula is well tolerated and improves quality of life and haemoglobin A1c in type 2 diabetes: A double-blind, randomized, placebo-controlled trial
errDIABETES OBESITY & METABOLISM
IF5.7
err2023-01-23
err11
errOAAI
errFrias, Juan P. P.; Lee, Martin L. L.; Carter, Matthew M. M.; Ebel, Emily R. R.; Lai, Ren-Hau; Rikse, Lars; Washington, Marc E. E.; Sonnenburg, Justin L. L.; Damman, Christopher J. J.
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errSave
Oxidative ornithine metabolism supports non-inflammatory C. difficile colonization
errNATURE METABOLISM
IF20.8
err2022-01-06
err30
errOAAI
errPruss, Kali M.; Enam, Fatima; Battaglioli, Eric; DeFeo, Mary; Diaz, Oscar R.; Higginbottom, Steven K.; Fischer, Curt R.; Hryckowian, Andrew J.; Van Treuren, William; Dodd, Dylan; Kashyap, Purna; Sonnenburg, Justin L.
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errSave
Reporting guidelines for human microbiome research: the STORMS checklist
errNATURE MEDICINE
IF50
err2021-11-17
err212
errOAAI
errMirzayi, Chloe; Renson, Audrey; Zohra, Fatima; Elsafoury, Shaimaa; Geistlinger, Ludwig; Kasselman, Lora J.; Eckenrode, Kelly; van de Wijgert, Janneke; Loughman, Amy; Marques, Francine Z.; MacIntyre, David A.; Arumugam, Manimozhiyan; Azhar, Rimsha; Beghini, Francesco; Bergstrom, Kirk; Bhatt, Ami; Bisanz, Jordan E.; Braun, Jonathan; Bravo, Hector Corrada; Buck, Gregory A.; Bushman, Frederic; Casero, David; Clarke, Gerard; Carmen Collado, Maria; Cotter, Paul D.; Cryan, John F.; Demmer, Ryan T.; Devkota, Suzanne; Elinav, Eran; Escobar, Juan S.; Fettweis, Jennifer; Finn, Robert D.; Fodor, Anthony A.; Forslund, Sofia; Franke, Andre; Furlanello, Cesare; Gilbert, Jack; Grice, Elizabeth; Haibe-Kains, Benjamin; Handley, Scott; Herd, Pamela; Holmes, Susan; Jacobs, Jonathan P.; Karstens, Lisa; Knight, Rob; Knights, Dan; Koren, Omry; Kwon, Douglas S.; Langille, Morgan; Lindsay, Brianna; McGovern, Dermot; McHardy, Alice C.; McWeeney, Shannon; Mueller, Noel T.; Nezi, Luigi; Olm, Matthew; Palm, Noah; Pasolli, Edoardo; Raes, Jeroen; Redinbo, Matthew R.; Ruhlemann, Malte; Sartor, R. Balfour; Schloss, Patrick D.; Schriml, Lynn; Segal, Eran; Shardell, Michelle; Sharpton, Thomas; Smirnova, Ekaterina; Sokol, Harry; Sonnenburg, Justin L.; Srinivasan, Sujatha; Thingholm, Louise B.; Turnbaugh, Peter J.; Upadhyay, Vaibhav; Walls, Ramona L.; Wilmes, Paul; Yamada, Takuji; Zeller, Georg; Zhang, Mingyu; Zhao, Ni; Zhao, Liping; Bao, Wenjun; Culhane, Aedin; Devanarayan, Viswanath; Dopazo, Joaquin; Fan, Xiaohui; Fischer, Matthias; Jones, Wendell; Kusko, Rebecca; Mason, Christopher E.; Mercer, Tim R.; Sansone, Susanna-Assunta; Scherer, Andreas; Shi, Leming; Thakkar, Shraddha; Tong, Weida; Wolfinger, Russ; Hunter, Christopher; Segata, Nicola; Huttenhower, Curtis; Dowd, Jennifer B.; Jones, Heidi E.; Waldron, Levi
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errSave
Ancient human faeces and gut microbes of the past
errNATURE
IF48.5
err2021-05-17
err2
PREAI
errOlm, Matthew R.; Sonnenburg, Justin L.
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errSave

Research Directions

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