arrow
Back
C

C. Scott Baker

Oregon State University

58H-index
230Paper Count
1.0WCitation Count
Published Papers 40
Publication Date
Leveraging Synteny to Generate Reference Genomes for Conservation: Assembling the Genomes of Hector's and Maui Dolphins
err2025-04-04
err0
errOAAI
errS. Alvarez-Costes; C. S. Baker; R. Constantine; E. L. Carroll; J. Guhlin; L. Dutoit; S. Ferreira; D. Heimeier; N. J. Gemmell; J. Gillum; R. M. Hamner; W. Rayment; W. Roe; B. Te Aikā; L. Urban; A. Alexander
errShare
errSave
Collecting baleen whale blow samples by drone: A minimally intrusive tool for conservation genetics
err2024-04-04
err6
errOAAI
errO'Mahony, Eadin N.; Sremba, Angela L.; Keen, Eric M.; Robinson, Nicole; Dundas, Archie; Steel, Debbie; Wray, Janie; Baker, C. Scott; Gaggiotti, Oscar E.
errShare
errSave
Universal DNA methylation age across mammalian tissues (vol 3, pg 1144, 2023)
err2023-09-06
err2
errOAAI
errLu, A. T.; Fei, Z.; Haghani, A.; Robeck, T. R.; Zoller, J. A.; Li, C. Z.; Lowe, R.; Yan, Q.; Zhang, J.; Vu, H.; Ablaeva, J.; Acosta-Rodriguez, V. A.; Adams, D. M.; Almunia, J.; Aloysius, A.; Ardehali, R.; Arneson, A.; Baker, C. S.; Banks, G.; Belov, K.; Bennett, N. C.; Black, P.; Blumstein, D. T.; Bors, E. K.; Breeze, C. E.; Brooke, R. T.; Brown, J. L.; Carter, G. G.; Caulton, A.; Cavin, J. M.; Chakrabarti, L.; Chatzistamou, I.; Chen, H.; Cheng, K.; Chiavellini, P.; Choi, O. W.; Clarke, S. M.; Cooper, L. N.; Cossette, M. L.; Day, J.; DeYoung, J.; DiRocco, S.; Dold, C.; Ehmke, E. E.; Emmons, C. K.; Emmrich, S.; Erbay, E.; Erlacher-Reid, C.; Faulkes, C. G.; Ferguson, S. H.; Finno, C. J.; Flower, J. E.; Gaillard, J. M.; Garde, E.; Gerber, L.; Gladyshev, V. N.; Gorbunova, V.; Goya, R. G.; Grant, M. J.; Green, C. B.; Hales, E. N.; Hanson, M. B.; Hart, D. W.; Haulena, M.; Herrick, K.; Hogan, A. N.; Hogg, C. J.; Hore, T. A.; Huang, T.; Izpisua Belmonte, J. C.; Jasinska, A. J.; Jones, G.; Jourdain, E.; Kashpur, O.; Katcher, H.; Katsumata, E.; Kaza, V.; Kiaris, H.; Kobor, M. S.; Kordowitzki, P.; Koski, W. R.; Kruetzen, M.; Kwon, S. B.; Larison, B.; Lee, S. G.; Lehmann, M.; Lemaitre, J. F.; Levine, A. J.; Li, C.; Li, X.; Lim, A. R.; Lin, D. T. S.; Lindemann, D. M.; Little, T. J.; Macoretta, N.; Maddox, D.; Matkin, C. O.; Mattison, J. A.; McClure, M.; Mergl, J.; Meudt, J. J.; Montano, G. A.; Mozhui, K.; Munshi-South, J.; Naderi, A.; Nagy, M.; Narayan, P.; Nathanielsz, P. W.; Nguyen, N. B.; Niehrs, C.; O'Brien, J. K.; O'Tierney Ginn, P.; Odom, D. T.; Ophir, A. G.; Osborn, S.; Ostrander, E. A.; Parsons, K. M.; Paul, K. C.; Pellegrini, M.; Peters, K. J.; Pedersen, A. B.; Petersen, J. L.; Pietersen, D. W.; Pinho, G. M.; Plassais, J.; Poganik, J. R.; Prado, N. A.; Reddy, P.; Rey, B.; Ritz, B. R.; Robbins, J.; Rodriguez, M.; Russell, J.; Rydkina, E.; Sailer, L. L.; Salmon, A. B.; Sanghavi, A.; Schachtschneider, K. M.; Schmitt, D.; Schmitt, T.; Schomacher, L.; Schook, L. B.; Sears, K. E.; Seifert, A. W.; Seluanov, A.; Shafer, A. B. A.; Shanmuganayagam, D.; Shindyapina, A. V.; Simmons, M.; Singh, K.; Sinha, I.; Slone, J.; Snell, R. G.; Soltanmaohammadi, E.; Spangler, M. L.; Spriggs, M. C.; Staggs, L.; Stedman, N.; Steinman, K. J.; Stewart, D. T.; Sugrue, V. J.; Szladovits, B.; Takahashi, J. S.; Takasugi, M.; Teeling, E. C.; Thompson, M. J.; Van Bonn, B.; Vernes, S. C.; Villar, D.; Vinters, H. V.; Wallingford, M. C.; Wang, N.; Wayne, R. K.; Wilkinson, G. S.; Williams, C. K.; Williams, R. W.; Yang, X. W.; Yao, M.; Young, B. G.; Zhang, B.; Zhang, Z.; Zhao, P.; Zhao, Y.; Zhou, W.; Zimmermann, J.; Ernst, J.; Raj, K.; Horvath, S.
errShare
errSave
Guidelines and quantitative standards for improved cetacean taxonomy using full mitochondrial genomes
err2023-08-30
err6
errOAAI
errMorin, Phillip A.; Martien, Karen K.; Lang, Aimee R.; Hancock-Hanser, Brittany L.; Pease, Victoria L.; Robertson, Kelly M.; Sattler, Maya; Slikas, Elizabeth; Rosel, Patricia E.; Baker, C. Scott; Taylor, Barbara L.; Archer, Frederick, I
errShare
errSave
Diversity of mitochondrial DNA in 3 species of great whales before and after modern whaling
err2023-08-14
err3
errOAAI
errSremba, Angela L.; Martin, Anthony R.; Wilson, Peter; Cypriano-Souza, Ana Lucia; Buss, Danielle L.; Hart, Tom; Engel, Marcia H.; Bonatto, Sandro L.; Rosenbaum, Howard; Collins, Tim; Olavarria, Carlos; Archer, Frederick, I; Steel, Debbie; Jackson, Jennifer A.; Baker, C. Scott
errShare
errSave
Universal DNA methylation age across mammalian tissues
err2023-08-10
err94
errOAAI
errLu, A. T.; Fei, Z.; Haghani, A.; Robeck, T. R.; Zoller, J. A.; Li, C. Z.; Lowe, R.; Yan, Q.; Zhang, J.; Vu, H.; Ablaeva, J.; Acosta-Rodriguez, V. A.; Adams, D. M.; Almunia, J.; Aloysius, A.; Ardehali, R.; Arneson, A.; Baker, C. S.; Banks, G.; Belov, K.; Bennett, N. C.; Black, P.; Blumstein, D. T.; Bors, E. K.; Breeze, C. E.; Brooke, R. T.; Brown, J. L.; Carter, G. G.; Caulton, A.; Cavin, J. M.; Chakrabarti, L.; Chatzistamou, I.; Chen, H.; Cheng, K.; Chiavellini, P.; Choi, O. W.; Clarke, S. M.; Cooper, L. N.; Cossette, M. L.; Day, J.; DeYoung, J.; DiRocco, S.; Dold, C.; Ehmke, E. E.; Emmons, C. K.; Emmrich, S.; Erbay, E.; Erlacher-Reid, C.; Faulkes, C. G.; Ferguson, S. H.; Finno, C. J.; Flower, J. E.; Gaillard, J. M.; Garde, E.; Gerber, L.; Gladyshev, V. N.; Gorbunova, V.; Goya, R. G.; Grant, M. J.; Green, C. B.; Hales, E. N.; Hanson, M. B.; Hart, D. W.; Haulena, M.; Herrick, K.; Hogan, A. N.; Hogg, C. J.; Hore, T. A.; Huang, T.; Izpisua Belmonte, J. C.; Jasinska, A. J.; Jones, G.; Jourdain, E.; Kashpur, O.; Katcher, H.; Katsumata, E.; Kaza, V.; Kiaris, H.; Kobor, M. S.; Kordowitzki, P.; Koski, W. R.; Kruetzen, M.; Kwon, S. B.; Larison, B.; Lee, S. G.; Lehmann, M.; Lemaitre, J. F.; Levine, A. J.; Li, C.; Li, X.; Lim, A. R.; Lin, D. T. S.; Lindemann, D. M.; Little, T. J.; Macoretta, N.; Maddox, D.; Matkin, C. O.; Mattison, J. A.; McClure, M.; Mergl, J.; Meudt, J. J.; Montano, G. A.; Mozhui, K.; Munshi-South, J.; Naderi, A.; Nagy, M.; Narayan, P.; Nathanielsz, P. W.; Nguyen, N. B.; Niehrs, C.; O'Brien, J. K.; O'Tierney Ginn, P.; Odom, D. T.; Ophir, A. G.; Osborn, S.; Ostrander, E. A.; Parsons, K. M.; Paul, K. C.; Pellegrini, M.; Peters, K. J.; Pedersen, A. B.; Petersen, J. L.; Pietersen, D. W.; Pinho, G. M.; Plassais, J.; Poganik, J. R.; Prado, N. A.; Reddy, P.; Rey, B.; Ritz, B. R.; Robbins, J.; Rodriguez, M.; Russell, J.; Rydkina, E.; Sailer, L. L.; Salmon, A. B.; Sanghavi, A.; Schachtschneider, K. M.; Schmitt, D.; Schmitt, T.; Schomacher, L.; Schook, L. B.; Sears, K. E.; Seifert, A. W.; Seluanov, A.; Shafer, A. B. A.; Shanmuganayagam, D.; Shindyapina, A. V.; Simmons, M.; Singh, K.; Sinha, I.; Slone, J.; Snell, R. G.; Soltanmaohammadi, E.; Spangler, M. L.; Spriggs, M. C.; Staggs, L.; Stedman, N.; Steinman, K. J.; Stewart, D. T.; Sugrue, V. J.; Szladovits, B.; Takahashi, J. S.; Takasugi, M.; Teeling, E. C.; Thompson, M. J.; Van Bonn, B.; Vernes, S. C.; Villar, D.; Vinters, H. V.; Wallingford, M. C.; Wang, N.; Wayne, R. K.; Wilkinson, G. S.; Williams, C. K.; Williams, R. W.; Yang, X. W.; Yao, M.; Young, B. G.; Zhang, B.; Zhang, Z.; Zhao, P.; Zhao, Y.; Zhou, W.; Zimmermann, J.; Ernst, J.; Raj, K.; Horvath, S.
errShare
errSave
Long-term stability in the circumpolar foraging range of a Southern Ocean predator between the eras of whaling and rapid climate change
err2023-02-27
err7
errOAAI
errDerville, Solene; Torres, Leigh G.; Newsome, Seth D.; Somes., Christopher J.; Valenzuela., Luciano O.; Zanden, Hannah B. Vander.; Baker, C. Scott; Berube, Martine; Busquets-Vass, Geraldine; Carlyon, Kris; Childerhouse, Simon J.; Constantine, Rochelle; Dunshea, Glenn; Flores, Paulo A. C.; Goldsworthy, Simon D.; Graham, Brittany; Groch, Karina; Groecke, Darren R.; Harcourt, Robert; Hindell, Mark A.; Hulva, Pavel; Jackson, Jennifer A.; Kennedy, Amy S.; Lundquist, David; Mackay, Alice I.; Neveceralova, Petra; Oliveira, Larissa; Ott, Paulo H.; Palsboll, Per J.; Patenaude, Nathalie J.; Rowntree, Victoria; Sironi, Mariano; Vermeuelen, Els; Watson, Mandy; Zerbini, Alexandre N.; Carroll, Emma L.
errShare
errSave
A surplus no more? Variation in krill availability impacts reproductive rates of Antarctic baleen whales
err2023-01-15
err27
errOAAI
errPallin, Logan J.; Kellar, Nick M.; Steel, Debbie; Botero-Acosta, Natalia; Baker, C. Scott; Conroy, Jack A.; Costa, Daniel P.; Johnson, Chris M.; Johnston, David W.; Nichols, Ross C.; Nowacek, Doug P.; Read, Andrew J.; Savenko, Oksana; Schofield, Oscar M.; Stammerjohn, Sharon E.; Steinberg, Deborah K.; Friedlaender, Ari S.
errShare
errSave
Biogeography in the deep: Hierarchical population genomic structure of two beaked whale species
err2022-12-01
err9
errOAAI
errOnoufriou, Aubrie B.; Gaggiotti, Oscar E.; de Soto, Natacha Aguilar; McCarthy, Morgan L.; Morin, Phillip A.; Rosso, Massimiliano; Dalebout, Merel; Davison, Nicholas; Baird, Robin W.; Baker, C. Scott; Berrow, Simon; Brownlow, Andrew; Burns, Daniel; Caurant, Florence; Claridge, Diane; Constantine, Rochelle; Demaret, Fabien; Dreyer, Sascha; Duras, Martina; Durban, John W.; Frantzis, Alexandros; Freitas, Luis; Genty, Gabrielle; Galov, Ana; Hansen, Sabine S.; Kitchener, Andrew C.; Martin, Vidal; Mignucci-Giannoni, Antonio A.; Montano, Valeria; Moulins, Aurelie; Olavarria, Carlos; Poole, M. Michael; Suarez, Cristel Reyes; Rogan, Emer; Ryan, Conor; Schiavi, Agustina; Tepsich, Paola; Urban, Jorge R.; West, Kristi; Olsen, Morten Tange; Carroll, Emma L.
errShare
errSave
Variation in blubber cortisol levels in a recovering humpback whale population inhabiting a rapidly changing environment
err2022-11-24
err9
errOAAI
errPallin, L. J.; Botero-Acosta, N.; Steel, D.; Baker, C. S.; Casey, C.; Costa, D. P.; Goldbogen, J. A.; Johnston, D. W.; Kellar, N. M.; Modest, M.; Nichols, R.; Roberts, D.; Roberts, M.; Savenko, O.; Friedlaender, A. S.
errShare
errSave
mtDNA heteroplasmy gives rise to a new maternal lineage in North Pacific humpback whales (Megaptera novaeangliae)
err2022-09-23
err0
errOAAI
errPierszalowski, Sophie P.; Steel, Debbie J.; Gabriele, Christine M.; Neilson, Janet L.; Vanselow, Phoebe B. S.; Cedarleaf, Jennifer A.; Straley, Janice M.; Baker, C. Scott
errShare
errSave
An epigenetic clock to estimate the age of living beluga whales
err2021-02-03
err37
errOAAI
errBors, Eleanor K.; Baker, C. Scott; Wade, Paul R.; O'Neill, Kaimyn B.; Shelden, Kim E. W.; Thompson, Michael J.; Fei, Zhe; Jarman, Simon; Horvath, Steve
errShare
errSave
Genetic Diversity and Connectivity of Southern Right Whales (Eubalaena australis) Found in the Brazil and Chile-Peru Wintering Grounds and the South Georgia (Islas Georgias del Sur) Feeding Ground
err2020-04-29
err22
errOAAI
errCarroll, Emma L.; Ott, Paulo H.; McMillan, Louise F.; Vernazzani, Barbara Galletti; Neveceralova, Petra; Vermeulen, Els; Gaggiotti, Oscar E.; Andriolo, Artur; Baker, C. Scott; Bamford, Connor; Best, Peter; Cabrera, Elsa; Calderan, Susannah; Chirife, Andrea; Fewster, Rachel M.; Flores, Paulo A. C.; Frasier, Timothy; Freitas, Thales R. O.; Groch, Karina; Hulva, Pavel; Kennedy, Amy; Leaper, Russell; Leslie, Matthew S.; Moore, Michael; Oliveira, Larissa; Seger, Jon; Stepien, Emilie N.; Valenzuela, Luciano O.; Zerbini, Alexandre; Jackson, Jennifer A.
errShare
errSave
Whales in warming water: Assessing breeding habitat diversity and adaptability in Oceania's changing climate
err2019-02-13
err39
PREAI
errDerville, Solene; Torres, Leigh G.; Albertson, Renee; Andrews, Olive; Baker, C. Scott; Carzon, Pamela; Constantine, Rochelle; Donoghue, Michael; Dutheil, Cyril; Gannier, Alexandre; Oremus, Marc; Poole, Michael M.; Robbins, Jooke; Garrigue, Claire
errShare
errSave
The Influence of Selection on MHC DQA and DQB Haplotypes in the Endemic New Zealand Hector's and Maui Dolphins
err2018-09-21
err6
errOAAI
errHeimeier, Dorothea; Alexander, Alana; Hamner, Rebecca M.; Pichler, Franz; Baker, C. Scott
errShare
errSave
Incorporating non-equilibrium dynamics into demographic history inferences of a migratory marine species
err2018-05-03
err22
errOAAI
errCarroll, E. L.; Alderman, R.; Bannister, J. L.; Berube, M.; Best, P. B.; Boren, L.; Baker, C. S.; Constantine, R.; Findlay, K.; Harcourt, R.; Lemaire, L.; Palsboll, P. J.; Patenaude, N. J.; Rowntree, V. J.; Seger, J.; Steel, D.; Valenzuela, L. O.; Watson, M.; Gaggiotti, O. E.
errShare
errSave
Genotype-based estimates of local abundance and effective population size for Hector's dolphins
err2017-07-01
err9
PREAI
errHamner, Rebecca M.; Constantine, Rochelle; Mattlin, Rob; Waples, Robin; Baker, C. Scott
errShare
errSave
Historical dimensions of population structure in a continuously distributed marine species: The case of the endemic Chilean dolphin
err2016-10-19
err11
errOAAI
errPerez-Alvarez, M. J.; Olavarria, C.; Moraga, R.; Baker, C. S.; Hamner, R. M.; Poulin, E.
errShare
errSave
Cultural traditions across a migratory network shape the genetic structure of southern right whales around Australia and New Zealand
err2015-11-09
err74
errOAAI
errCarroll, E. L.; Baker, C. S.; Watson, M.; Alderman, R.; Bannister, J.; Gaggiotti, O. E.; Groecke, D. R.; Patenaude, N.; Harcourt, R.
errShare
errSave