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Playbook workflow builder: Interactive construction of bioinformatics workflows Clarke, Daniel J. B.; Evangelista, John Erol; Xie, Zhuorui; Marino, Giacomo B.; Byrd, Anna I.; Maurya, Mano R.; Srinivasan, Sumana; Yu, Keyang; Petrosyan, Varduhi; Roth, Matthew E.; Milinkov, Miroslav; King, Charles Hadley; Vora, Jeet Kiran; Keeney, Jonathon; Nemarich, Christopher; Khan, William; Lachmann, Alexander; Ahmed, Nasheath; Agris, Alexandra; Pan, Juncheng; Ramachandran, Srinivasan; Fahy, Eoin; Esquivel, Emmanuel; Mihajlovic, Aleksandar; Jevtic, Bosko; Milinovic, Vuk; Kim, Sean; McNeely, Patrick; Wang, Tianyi; Wenger, Eric; Brown, Miguel A.; Sickler, Alexander; Zhu, Yuankun; Jenkins, Sherry L.; Blood, Philip D.; Taylor, Deanne M.; Resnick, Adam C.; Mazumder, Raja; Milosavljevic, Aleksandar; Subramaniam, Shankar; Ma'ayan, Avi Share Save
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Multiomics2Targets identifies targets from cancer cohorts profiled with transcriptomics, proteomics, and phosphoproteomics Deng, Eden Z.; Marino, Giacomo B.; Clarke, Daniel J. B.; Diamant, Ido; Resnick, Adam C.; Ma, Weiping; Wang, Pei; Maayan, Avi Share Save
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Toxicology knowledge graph for structural birth defects Evangelista, John Erol; Clarke, Daniel J. B.; Xie, Zhuorui; Marino, Giacomo B.; Utti, Vivian; Jenkins, Sherry L.; Ahooyi, Taha Mohseni; Bologa, Cristian G.; Yang, Jeremy J.; Binder, Jessica L.; Kumar, Praveen; Lambert, Christophe G.; Grethe, Jeffrey S.; Wenger, Eric; Taylor, Deanne; Oprea, Tudor, I; de Bono, Bernard; Ma'ayan, Avi Share Save
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Making Common Fund data more findable: catalyzing a data ecosystem Charbonneau, Amanda L.; Brady, Arthur; Czajkowski, Karl; Aluvathingal, Jain; Canchi, Saranya; Carter, Robert; Chard, Kyle; Clarke, Daniel J. B.; Crabtree, Jonathan; Creasy, Heather H.; D'Arcy, Mike; Felix, Victor; Giglio, Michelle; Gingrich, Alicia; Harris, Rayna M.; Hodges, Theresa K.; Ifeonu, Olukemi; Jeon, Minji; Kropiwnicki, Eryk; Lim, Marisa C. W.; Liming, R. Lee; Lumian, Jessica; Mahurkar, Anup A.; Mandal, Meisha; Munro, James B.; Nadendla, Suvarna; Richter, Rudyard; Romano, Cia; Rocca-Serra, Philippe; Schor, Michael; Schuler, Robert E.; Tangmunarunkit, Hongsuda; Waldrop, Alex; Williams, Cris; Word, Karen; Sansone, Susanna-Assunta; Ma'ayan, Avi; Wagner, Rick; Foster, Ian; Kesselman, Carl; Brown, C. Titus; White, Owen Share Save
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A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses Gross, Sean M.; Dane, Mark A.; Smith, Rebecca L.; Devlin, Kaylyn L.; McLean, Ian C.; Derrick, Daniel S.; Mills, Caitlin E.; Subramanian, Kartik; London, Alexandra B.; Torre, Denis; Evangelista, John Erol; Clarke, Daniel J. B.; Xie, Zhuorui; Erdem, Cemal; Lyons, Nicholas; Natoli, Ted; Pessa, Sarah; Lu, Xiaodong; Mullahoo, James; Li, Jonathan; Adam, Miriam; Wassie, Brook; Liu, Moqing; Kilburn, David F.; Liby, Tiera A.; Bucher, Elmar; Sanchez-Aguila, Crystal; Daily, Kenneth; Omberg, Larsson; Wang, Yunguan; Jacobson, Connor; Yapp, Clarence; Chung, Mirra; Vidovic, Dusica; Lu, Yiling; Schurer, Stephan; Lee, Albert; Pillai, Ajay; Subramanian, Aravind; Papanastasiou, Malvina; Fraenkel, Ernest; Feiler, Heidi S.; Mills, Gordon B.; Jaffe, Jake D.; Ma'ayan, Avi; Birtwistle, Marc R.; Sorger, Peter K.; Korkola, James E.; Gray, Joe W.; Heiser, Laura M. Share Save
Connecting omics signatures and revealing biological mechanisms with iLINCS Pilarczyk, Marcin; Fazel-Najafabadi, Mehdi; Kouril, Michal; Shamsaei, Behrouz; Vasiliauskas, Juozas; Niu, Wen; Mahi, Naim; Zhang, Lixia; Clark, Nicholas A.; Ren, Yan; White, Shana; Karim, Rashid; Xu, Huan; Biesiada, Jacek; Bennett, Mark F.; Davidson, Sarah E.; Reichard, John F.; Roberts, Kurt; Stathias, Vasileios; Koleti, Amar; Vidovic, Dusica; Clarke, Daniel J. B.; Schurer, Stephan C.; Ma'ayan, Avi; Meller, Jarek; Medvedovic, Mario Share Save
SigCom LINCS: data and metadata search engine for a million gene expression signatures Evangelista, John Erol; Clarke, Daniel J. B.; Xie, Zhuorui; Lachmann, Alexander; Jeon, Minji; Chen, Kerwin; Jagodnik, Kathleen M.; Jenkins, Sherry L.; Kuleshov, Maxim, V; Wojciechowicz, Megan L.; Schurer, Stephan C.; Medvedovic, Mario; Ma'ayan, Avi Share Save
Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning Kropiwnicki, Eryk; Evangelista, John E.; Stein, Daniel J.; Clarke, Daniel J. B.; Lachmann, Alexander; Kuleshov, Maxim, V; Jeon, Minji; Jagodnik, Kathleen M.; Ma'ayan, Avi Share Save
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