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José Manuel Rodrı́guez

centro nacional de investigaciones oncologicas (cnio)

33H-index
81Paper Count
1.4WCitation Count
Published Papers 32
Publication Date
A Multiplexed Quantitative Proteomics Approach to the Human Plasma Protein Signature
err2024-09-18
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errNunez, Estefania; Gomez-Serrano, Maria; Calvo, Enrique; Bonzon-Kulichenko, Elena; Trevisan-Herraz, Marco; Rodriguez, Jose Manuel; Garcia-Marques, Fernando; Magni, Ricardo; Lara-Pezzi, Enrique; Martin-Ventura, Jose Luis; Camafeita, Emilio; Vazquez, Jesus
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Evidence for widespread translation of 5′ untranslated regions
err2024-07-02
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errRodriguez, Jose Manuel; Abascal, Federico; Cerdan-Velez, Daniel; Gomez, Laura Martinez; Vazquez, Jesus; Tress, Michael L.
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Oxidative Post-translational Protein Modifications upon Ischemia/Reperfusion Injury
err2024-01-16
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errOAAI
errBinek, Aleksandra; Castans, Celia; Jorge, Inmaculada; Bagwan, Navratan; Rodriguez, Jose Manuel; Fernandez-Jimenez, Rodrigo; Galan-Arriola, Carlos; Oliver, Eduardo; Gomez, Monica; Clemente-Moragon, Agustin; Ibanez, Borja; Camafeita, Emilio; Vazquez, Jesus
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Unbiased plasma proteomics discovery of biomarkers for improved detection of subclinical atherosclerosis
err2022-02-01
err32
errOAAI
errNunez, Estefania; Fuster, Valentin; Gomez-Serrano, Maria; Manuel Valdivielso, Jose; Miguel Fernandez-Alvira, Juan; Martinez-Lopez, Diego; Manuel Rodriguez, Jose; Bonzon-Kulichenko, Elena; Calvo, Enrique; Alfayate, Alvaro; Bermudez-Lopez, Marcelino; Carles Escola-Gil, Joan; Fernandez-Friera, Leticia; Cerro-Pardo, Isabel; Maria Mendiguren, Jose; Sanchez-Cabo, Fatima; Sanz, Javier; Maria Ordovas, Jose; Miguel Blanco-Colio, Luis; Manuel Garcia-Ruiz, Jose; Ibanez, Borja; Lara-Pezzi, Enrique; Fernandez-Ortiz, Antonio; Luis Martin-Ventura, Jose; Vazquez, Jesus
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APPRIS: selecting functionally important isoforms
err2021-11-10
err28
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errManuel Rodriguez, Jose; Pozo, Fernando; Cerdan-Velez, Daniel; Di Domenico, Tomas; Vazquez, Jesus; Tress, Michael L.
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Assessing the functional relevance of splice isoforms
err2021-05-22
err29
errOAAI
errPozo, Fernando; Martinez-Gomez, Laura; Walsh, Thomas A.; Rodriguez, Jose Manuel; Di Domenico, Tomas; Abascal, Federico; Vazquez, Jesus; Tress, Michael L.
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The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
err2019-11-19
err264
errOAAI
errZhou, Naihui; Jiang, Yuxiang; Bergquist, Timothy R.; Lee, Alexandra J.; Kacsoh, Balint Z.; Crocker, Alex W.; Lewis, Kimberley A.; Georghiou, George; Nguyen, Huy N.; Hamid, Md Nafiz; Davis, Larry; Dogan, Tunca; Atalay, Volkan; Rifaioglu, Ahmet S.; Dalkiran, Alperen; Atalay, Rengul Cetin; Zhang, Chengxin; Hurto, Rebecca L.; Freddolino, Peter L.; Zhang, Yang; Bhat, Prajwal; Supek, Fran; Fernandez, Jose M.; Gemovic, Branislava; Perovic, Vladimir R.; Davidovic, Radoslav S.; Sumonja, Neven; Veljkovic, Nevena; Asgari, Ehsaneddin; Mofrad, Mohammad R. K.; Profiti, Giuseppe; Savojardo, Castrense; Martelli, Pier Luigi; Casadio, Rita; Boecker, Florian; Schoof, Heiko; Kahanda, Indika; Thurlby, Natalie; McHardy, Alice C.; Renaux, Alexandre; Saidi, Rabie; Gough, Julian; Freitas, Alex A.; Antczak, Magdalena; Fabris, Fabio; Wass, Mark N.; Hou, Jie; Cheng, Jianlin; Wang, Zheng; Romero, Alfonso E.; Paccanaro, Alberto; Yang, Haixuan; Goldberg, Tatyana; Zhao, Chenguang; Holm, Liisa; Toronen, Petri; Medlar, Alan J.; Zosa, Elaine; Borukhov, Itamar; Novikov, Ilya; Wilkins, Angela; Lichtarge, Olivier; Chi, Po-Han; Tseng, Wei-Cheng; Linial, Michal; Rose, Peter W.; Dessimoz, Christophe; Vidulin, Vedrana; Dzeroski, Saso; Sillitoe, Ian; Das, Sayoni; Lees, Jonathan Gill; Jones, David T.; Wan, Cen; Cozzetto, Domenico; Fa, Rui; Torres, Mateo; Vesztrocy, Alex Warwick; Rodriguez, Jose Manuel; Tress, Michael L.; Frasca, Marco; Notaro, Marco; Grossi, Giuliano; Petrini, Alessandro; Re, Matteo; Valentini, Giorgio; Mesiti, Marco; Roche, Daniel B.; Reeb, Jonas; Ritchie, David W.; Aridhi, Sabeur; Alborzi, Seyed Ziaeddin; Devignes, Marie-Dominique; Koo, Da Chen Emily; Bonneau, Richard; Gligorijevic, Vladimir; Barot, Meet; Fang, Hai; Toppo, Stefano; Lavezzo, Enrico; Falda, Marco; Berselli, Michele; Tosatto, Silvio C. E.; Carraro, Marco; Piovesan, Damiano; Rehman, Hafeez Ur; Mao, Qizhong; Zhang, Shanshan; Vucetic, Slobodan; Black, Gage S.; Jo, Dane; Suh, Erica; Dayton, Jonathan B.; Larsen, Dallas J.; Omdahl, Ashton R.; McGuffin, Liam J.; Brackenridge, Danielle A.; Babbitt, Patricia C.; Yunes, Jeffrey M.; Fontana, Paolo; Zhang, Feng; Zhu, Shanfeng; You, Ronghui; Zhang, Zihan; Dai, Suyang; Yao, Shuwei; Tian, Weidong; Cao, Renzhi; Chandler, Caleb; Amezola, Miguel; Johnson, Devon; Chang, Jia-Ming; Liao, Wen-Hung; Liu, Yi-Wei; Pascarelli, Stefano; Frank, Yotam; Hoehndorf, Robert; Kulmanov, Maxat; Boudellioua, Imane; Politano, Gianfranco; Di Carlo, Stefano; Benso, Alfredo; Hakala, Kai; Ginter, Filip; Mehryary, Farrokh; Kaewphan, Suwisa; Bjorne, Jari; Moen, Hans; Tolvanen, Martti E. E.; Salakoski, Tapio; Kihara, Daisuke; Jain, Aashish; Smuc, Tomislav; Altenhoff, Adrian; Ben-Hur, Asa; Rost, Burkhard; Brenner, Steven E.; Orengo, Christine A.; Jeffery, Constance J.; Bosco, Giovanni; Hogan, Deborah A.; Martin, Maria J.; O'Donovan, Claire; Mooney, Sean D.; Greene, Casey S.; Radivojac, Predrag; Friedberg, Iddo
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Loose ends: almost one in five human genes still have unresolved coding status (vol 46, pg 7070, 2018)
err2018-11-05
err3
errOAAI
errAbascal, Federico; Juan, David; Jungreis, Irwin; Kellis, Manolis; Martinez, Laura; Rigau, Maria; Manuel Rodriguez, Jose; Vazquez, Jesus; Tress, Michael L.
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Loose ends: almost one in five human genes still have unresolved coding status
err2018-06-30
err47
errOAAI
errAbascal, Federico; Juan, David; Jungreis, Irwin; Martinez, Laura; Rigau, Maria; Manuel Rodriguez, Jose; Vazquez, Jesus; Tress, Michael L.
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Comprehensive Quantification of the Modified Proteome Reveals Oxidative Heart Damage in Mitochondrial Heteroplasmy
err2018-06-01
err35
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errBagwan, Navratan; Bonzon-Kulichenko, Elena; Calvo, Enrique; Victoria Lechuga-Vieco, Ana; Michalakopoulos, Spiros; Trevisan-Herraz, Marco; Ezkurdia, Iakes; Manuel Rodriguez, Jose; Magni, Ricardo; Latorre-Pellicer, Ana; Antonio Enriquez, Jose; Vazquez, Jesus
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APPRIS 2017: principal isoforms for multiple gene sets
err2017-10-23
err92
errOAAI
errRodriguez, Jose Manuel; Rodriguez-Rivas, Juan; Di Domenico, Tomas; Vazquez, Jesus; Valencia, Alfonso; Tress, Michael L.
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APPRIS WebServer and WebServices
err2015-05-18
err18
errOAAI
errManuel Rodriguez, Jose; Carro, Angel; Valencia, Alfonso; Tress, Michael L.
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Most Highly Expressed Protein-Coding Genes Have a Single Dominant Isoform
err2015-03-11
err91
errOAAI
errEzkurdia, Iakes; Manuel Rodriguez, Jose; Carrillo-de Santa Pau, Enrique; Vazquez, Jesus; Valencia, Alfonso; Tress, Michael L.
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Multiple evidence strands suggest that there may be as few as 19 000 human protein-coding genes
err2014-06-16
err423
errOAAI
errEzkurdia, Iakes; Juan, David; Manuel Rodriguez, Jose; Frankish, Adam; Diekhans, Mark; Harrow, Jennifer; Vazquez, Jesus; Valencia, Alfonso; Tress, Michael L.
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De Novo Assembly and Functional Annotation of the Olive (Olea europaea) Transcriptome
err2013-01-07
err81
errOAAI
errMunoz-Merida, Antonio; Jose Gonzalez-Plaza, Juan; Canada, Andres; Maria Blanco, Ana; del Carmen Garcia-Lopez, Maria; Manuel Rodriguez, Jose; Pedrola, Laia; Dolores Sicardo, M.; Luisa Hernandez, M.; De la Rosa, Raul; Belaj, Angjelina; Gil-Borja, Mayte; Luque, Francisco; Manuel Martinez-Rivas, Jose; Pisano, David G.; Trelles, Oswaldo; Valpuesta, Victoriano; Beuzon, Carmen R.
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APPRIS: annotation of principal and alternative splice isoforms
err2012-11-17
err175
errOAAI
errManuel Rodriguez, Jose; Maietta, Paolo; Ezkurdia, Iakes; Pietrelli, Alessandro; Wesselink, Jan-Jaap; Lopez, Gonzalo; Valencia, Alfonso; Tress, Michael L.
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GENCODE: The reference human genome annotation for The ENCODE Project
err2012-09-05
err3.9K
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errHarrow, Jennifer; Frankish, Adam; Gonzalez, Jose M.; Tapanari, Electra; Diekhans, Mark; Kokocinski, Felix; Aken, Bronwen L.; Barrell, Daniel; Zadissa, Amonida; Searle, Stephen; Barnes, If; Bignell, Alexandra; Boychenko, Veronika; Hunt, Toby; Kay, Mike; Mukherjee, Gaurab; Rajan, Jeena; Despacio-Reyes, Gloria; Saunders, Gary; Steward, Charles; Harte, Rachel; Lin, Michael; Howald, Cedric; Tanzer, Andrea; Derrien, Thomas; Chrast, Jacqueline; Walters, Nathalie; Balasubramanian, Suganthi; Pei, Baikang; Tress, Michael; Manuel Rodriguez, Jose; Ezkurdia, Iakes; van Baren, Jeltje; Brent, Michael; Haussler, David; Kellis, Manolis; Valencia, Alfonso; Reymond, Alexandre; Gerstein, Mark; Guigo, Roderic; Hubbard, Tim J.
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Development of a Population-Based Cost-Effectiveness Model of Chronic Graft-Versus-Host Disease in Spain
err2012-08-01
err12
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errCrespo, Carlos; Anton Perez-Simon, Jose; Manuel Rodriguez, Jose; Sierra, Jordi; Brosa, Max
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Comparative Proteomics Reveals a Significant Bias Toward Alternative Protein Isoforms with Conserved Structure and Function
err2012-03-22
err67
errOAAI
errEzkurdia, Iakes; del Pozo, Angela; Frankish, Adam; Manuel Rodriguez, Jose; Harrow, Jennifer; Ashman, Keith; Valencia, Alfonso; Tress, Michael L.
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firestar-advances in the prediction of functionally important residues
err2011-06-14
err48
errOAAI
errLopez, Gonzalo; Maietta, Paolo; Rodriguez, Jose Manuel; Valencia, Alfonso; Tress, Michael L.
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