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J

Jussi Taipale

Karolinska Institutet

75H-index
256Paper Count
3.8WCitation Count
Published Papers 90
Publication Date
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Multi-omics analysis reveals the attenuation of the interferon pathway as a driver of chemo-refractory ovarian cancer
errCell Reports Medicine
IF10.6
err2025-08-29
err0
errOAAI
errDaria Afenteva; Rong Yu; Anna Rajavuori; Marina Salvadores; Inga-Maria Launonen; Kari Lavikka; Kaiyang Zhang; Anna Pirttikoski; Giovanni Marchi; Sanaz Jamalzadeh; Veli-Matti Isoviita; Yilin Li; Giulia Micoli; Erdogan Pekcan Erkan; Matias M. Falco; Daniela Ungureanu; Alexandra Lahtinen; Jaana Oikkonen; Sakari Hietanen; Anna Vähärautio; Inderpreet Sur; Anni Virtanen; Anniina Färkkilä; Johanna Hynninen; Taru A. Muranen; Jussi Taipale; Sampsa Hautaniemi
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errSave
Diverse oncogenes use common mechanisms to drive growth of major forms of human cancer
errScience Advances
IF12.5
err2025-08-20
err0
PREAI
errOtto Kauko; Mikko Turunen; Päivi Pihlajamaa; Antti Häkkinen; Rayner M. L. Queiroz; Mirva Pääkkönen; Sami Ventelä; Massimiliano Gaetani; Susanna L. Lundström; Antonio Murgia; Biswajyoti Sahu; Johannes Routila; Gong-Hong Wei; Heikki Irjala; Julian L. Griffin; Kathryn S. Lilley; Teemu Kivioja; Sampsa Hautaniemi; Jussi Taipale
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errSave
Shared requirement for MYC upstream super-enhancer region in tissue regeneration and cancer
errLIFE SCIENCE ALLIANCE
IF2.9
err2025-04-03
err0
errOAAI
errSur, Inderpreet; Zhao, Wenshuo; Zhang, Jilin; Pilstrom, Margareta Kling; Webb, Anna T.; Cheng, Huaitao; Ristimaki, Ari; Katajisto, Pekka; Enge, Martin; Rannikmae, Helena; de la Roche, Marc; Taipale, Jussi
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errSave
DNA methylation patterns of transcription factor binding regions characterize their functional and evolutionary contexts
errGENOME BIOLOGY
IF9.4
err2024-06-06
err1
errOAAI
errRimoldi, Martina; Wang, Ning; Zhang, Jilin; Villar, Diego; Odom, Duncan T.; Taipale, Jussi; Flicek, Paul; Roller, Masa
errShare
errSave
Pioneer factors - key regulators of chromatin and gene expression
errNATURE REVIEWS GENETICS
IF52
err2023-09-22
err8
PREAI
errBulyk, Martha L.; Drouin, Jacques; Harrison, Melissa M.; Taipale, Jussi; Zaret, Kenneth S.
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errSave
Deletion of Vascular endothelial growth factor C (VEGF-C) and VEGF-D is not equivalent to VEGF receptor 3 deletion in mouse embryos
errMOLECULAR AND CELLULAR BIOLOGY
IF2.7
err2023-03-27
err187
errOAAI
errHaiko, Paula; Makinen, Taija; Keskitalo, Salla; Taipale, Jussi; Karkkainen, Marika J.; Baldwin, Megan E.; Stacker, Steven A.; Achen, Marc G.; Alitalo, Kari
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errSave
Type 1 diabetes risk genes mediate pancreatic beta cell survival in response to proinflammatory cytokines
errCELL GENOMICS
IF9
err2022-12-01
err7
errOAAI
errBenaglio, Paola; Zhu, Han; Okino, Mei-Lin; Yan, Jian; Elgamal, Ruth; Nariai, Naoki; Beebe, Elisha; Korgaonkar, Katha; Qiu, Yunjiang; Donovan, Margaret K. R.; Chiou, Joshua; Wang, Gaowei; Newsome, Jacklyn; Kaur, Jaspreet; Miller, Michael; Preissl, Sebastian; Corban, Sierra; Aylward, Anthony; Taipale, Jussi; Ren, Bing; Frazer, Kelly A.; Sander, Maike; Gaulton, Kyle J.
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errSave
A competitive precision CRISPR method to identify the fitness effects of transcription factor binding sites
errNATURE BIOTECHNOLOGY
IF41.7
err2022-09-26
err2
errOAAI
errPihlajamaa, Paivi; Kauko, Otto; Sahu, Biswajyoti; Kivioja, Teemu; Taipale, Jussi
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errSave
Upregulation of ribosome biogenesis via canonical E-boxes is required for Myc-driven proliferation
errDEVELOPMENTAL CELL
IF8.7
err2022-04-01
err9
errOAAI
errZielke, Norman; Vaharautio, Anna; Liu, Jianping; Kivioja, Teemu; Taipale, Jussi
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errSave
Sequence determinants of human gene regulatory elements
errNATURE GENETICS
IF31.8
err2022-02-21
err85
errOAAI
errSahu, Biswajyoti; Hartonen, Tuomo; Pihlajamaa, Paivi; Wei, Bei; Dave, Kashyap; Zhu, Fangjie; Kaasinen, Eevi; Lidschreiber, Katja; Lidschreiber, Michael; Daub, Carsten O.; Cramer, Patrick; Kivioja, Teemu; Taipale, Jussi
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errSave
Structural insights into the interaction between transcription factors and the nucleosome
errCURRENT OPINION IN STRUCTURAL BIOLOGY
IF7
err2021-12-01
err16
errOAAI
errMorgunova, Ekaterina; Taipale, Jussi
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errSave
Parity associates with chromosomal damage in uterine leiomyomas
errNATURE COMMUNICATIONS
IF15.7
err2021-09-14
err2
errOAAI
errKuisma, Heli; Bramante, Simona; Rajamaki, Kristiina; Sipila, Lauri J.; Kaasinen, Eevi; Kaukomaa, Jaana; Palin, Kimmo; Makinen, Netta; Sjoberg, Jari; Sarvilinna, Nanna; Taipale, Jussi; Kauppi, Liisa; Tumiati, Manuela; Hassinen, Antti; Pitkaniemi, Janne; Jalkanen, Jyrki; Heikkinen, Sanna; Pasanen, Annukka; Heikinheimo, Oskari; Butzow, Ralf; Valimaki, Niko; Aaltonen, Lauri A.
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errSave
Genetic and Epigenetic Characteristics of Inflammatory Bowel Disease-Associated Colorectal Cancer
errGASTROENTEROLOGY
IF25.1
err2021-08-01
err113
errOAAI
errRajamaki, Kristiina; Taira, Aurora; Katainen, Riku; Valimaki, Niko; Kuosmanen, Anna; Plaketti, Roosa-Maria; Seppala, Toni T.; Ahtiainen, Maarit; Wirta, Erkki-Ville; Vartiainen, Emilia; Sulo, Paivi; Ravantti, Janne; Lehtipuro, Suvi; Granberg, Kirsi J.; Nykter, Matti; Tanskanen, Tomas; Ristimaki, Ari; Koskensalo, Selja; Renkonen-Sinisalo, Laura; Lepisto, Anna; Bohm, Jan; Taipale, Jussi; Mecklin, Jukka-Pekka; Aavikko, Mervi; Palin, Kimmo; Aaltonen, Lauri A.
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errSave
Human cell transformation by combined lineage conversion and oncogene expression
errONCOGENE
IF7.3
err2021-07-23
err15
errOAAI
errSahu, Biswajyoti; Pihlajamaa, Paivi; Zhang, Kaiyang; Palin, Kimmo; Ahonen, Saija; Cervera, Alejandra; Ristimaki, Ari; Aaltonen, Lauri A.; Hautaniemi, Sampsa; Taipale, Jussi
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errSave
WNT2 activation through proximal germline deletion predisposes to small intestinal neuroendocrine tumors and intestinal adenocarcinomas
errHUMAN MOLECULAR GENETICS
IF3.2
err2021-07-19
err8
errOAAI
errAavikko, Mervi; Kaasinen, Eevi; Andersson, Noora; Pentinmikko, Nalle; Sulo, Paivi; Donner, Iikki; Pihlajamaa, Paivi; Kuosmanen, Anna; Bramante, Simona; Katainen, Riku; Sipila, Lauri J.; Martin, Samantha; Arola, Johanna; Carpen, Olli; Heiskanen, Ilkka; Mecklin, Jukka-Pekka; Taipale, Jussi; Ristimaki, Ari; Lehti, Kaisa; Gucciardo, Erika; Katajisto, Pekka; Schalin-Jantti, Camilla; Vahteristo, Pia; Aaltonen, Lauri A.
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errSave
Transcriptionally active enhancers in human cancer cells
errMOLECULAR SYSTEMS BIOLOGY
IF7.7
err2021-01-27
err18
errOAAI
errLidschreiber, Katja; Jung, Lisa A.; von der Emde, Henrik; Dave, Kashyap; Taipale, Jussi; Cramer, Patrick; Lidschreiber, Michael
errShare
errSave
CRISPR-assisted detection of RNA-protein interactions in living cells (vol 17, pg 685, 2020)
errNATURE METHODS
IF32.1
err2021-01-22
err2
errOAAI
errYi, Wenkai; Li, Jingyu; Zhu, Xiaoxuan; Wang, Xi; Fan, Ligang; Sun, Wenju; Liao, Linbu; Zhang, Jilin; Li, Xiaoyu; Ye, Jing; Chen, Fulin; Taipale, Jussi; Chan, Kui Ming; Zhang, Liang; Yan, Jian
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errSave
A comprehensive library of human transcription factors for cell fate engineering
errNATURE BIOTECHNOLOGY
IF41.7
err2020-11-30
err127
errOAAI
errNg, Alex H. M.; Khoshakhlagh, Parastoo; Arias, Jesus Eduardo Rojo; Pasquini, Giovanni; Wang, Kai; Swiersy, Anka; Shipman, Seth L.; Appleton, Evan; Kiaee, Kiavash; Kohman, Richie E.; Vernet, Andyna; Dysart, Matthew; Leeper, Kathleen; Saylor, Wren; Huang, Jeremy Y.; Graveline, Amanda; Taipale, Jussi; Hill, David E.; Vidal, Marc; Melero-Martin, Juan M.; Busskamp, Volker; Church, George M.
errShare
errSave
Binding specificities of human RNA-binding proteins toward structured and linear RNA sequences
errGENOME RESEARCH
IF5.5
err2020-07-23
err66
errOAAI
errJolma, Arttu; Zhang, Jilin; Mondragon, Estefania; Morgunova, Ekaterina; Kivioja, Teemu; Laverty, Kaitlin U.; Yin, Yimeng; Zhu, Fangjie; Bourenkov, Gleb; Morris, Quaid; Hughes, Timothy R.; Maher III, Louis James; Taipale, Jussi
errShare
errSave
CRISPR-assisted detection of RNA-protein interactions in living cells
errNATURE METHODS
IF32.1
err2020-06-22
err87
errOAAI
errYi, Wenkai; Li, Jingyu; Zhu, Xiaoxuan; Wang, Xi; Fan, Ligang; Sun, Wenju; Liao, Linbu; Zhang, Jilin; Li, Xiaoyu; Ye, Jing; Chen, Fulin; Taipale, Jussi; Chan, Kui Ming; Zhang, Liang; Yan, Jian
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
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K
Kari Alitalo
H-index: 187 · Papers: 1.1K
A
Aarno Palotie
H-index: 171 · Papers: 1.2K
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Johan G. Eriksson
H-index: 169 · Papers: 1.8K
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