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Silvi Rouskin

Harvard University

24H-index
73Paper Count
5.9KCitation Count
Published Papers 28
Publication Date
Diverse database and machine learning model to narrow the generalization gap in RNA structure prediction
err2026-02-25
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errOAAI
errAlbéric A. de Lajarte; Yves J. Martin des Taillades; Justin Aruda; Pierre Bongrand; Federico Fuchs Wightman; Dragui Salazar; Matthew F. Allan; Colin Kalicki; Casper L’Esperance-Kerckhoff; Alex Kashi; Fabrice Jossinet; Silvi Rouskin
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Controlling intermolecular base pairing in Drosophila germ granules by mRNA folding and its implications in fly development
err2025-08-30
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errOAAI
errSiran Tian; Hung Nguyen; Ziqing Ye; Silvi Rouskin; D. Thirumalai; Tatjana Trcek
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SEISMICgraph: a web-based tool for RNA structure data visualization
err2025-08-12
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errWightman, Federico Fuchs; Yang, Grant; des Taillades, Yves J. Martin; L'Esperance-Kerckhoff, Casper; Grote, Scott; Allan, Matthew F.; Herschlag, Daniel; Rouskin, Silvi; Hagler, Lauren D.
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Viral RNA Interactome: The Ultimate Researcher's Guide to RNA-Protein Interactions
err2024-10-30
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errOAAI
errHanson, Wesley A.; Agosto, Gabriel A. Romero; Rouskin, Silvi
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KREH2 helicase represses ND7 mRNA editing in procyclic-stage Trypanosoma brucei by opposite modulation of canonical and 'moonlighting' gRNA utilization creating a proposed mRNA structure
err2024-08-16
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errMeehan, Joshua; Ivens, Alasdair; Grote, Scott; Rodshagen, Tyler; Chen, Zihao; Goode, Cody; Sharma, Sunil K.; Kumar, Vikas; Frese, Addison; Goodall, Zachary; McCleskey, Laura; Sechrist, Rebecca; Zeng, Lanying; Savill, Nicholas J.; Rouskin, Silvi; Schnaufer, Achim; Mcdermott, Suzanne M.; Cruz-Reyes, Jorge
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Pre-mRNA splicing order is predetermined and maintains splicing fidelity across multi-intronic transcripts
err2023-07-13
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PREAI
errChoquet, Karine; Baxter-Koenigs, Autum R.; Dulk, Sarah-Luisa; Smalec, Brendan M.; Rouskin, Silvi; Churchman, L. Stirling
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Trypanosome RNA helicase KREH2 differentially controls non-canonical editing and putative repressive structure via a novel proposed 'bifunctional' gRNA in mRNA A6
err2023-05-29
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errMeehan, Joshua; McDermott, Suzanne M.; Ivens, Alasdair; Goodall, Zachary; Chen, Zihao; Yu, Zihao; Woo, Jia; Rodshagen, Tyler; McCleskey, Laura; Sechrist, Rebecca; Stuart, Kenneth; Zeng, Lanying; Rouskin, Silvi; Savill, Nicholas J.; Schnaufer, Achim; Zhang, Xiuren; Cruz-Reyes, Jorge
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RNA levers and switches controlling viral gene expression
err2023-04-01
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errOAAI
errAllan, Matthew F.; Brivanlou, Amir; Rouskin, Silvi
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3D RNA-scaffolded wireframe origami
err2023-01-24
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errParsons, Molly F.; Allan, Matthew F.; Li, Shanshan; Shepherd, Tyson R.; Ratanalert, Sakul; Zhang, Kaiming; Pullen, Krista M.; Chiu, Wah; Rouskin, Silvi; Bathe, Mark
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Recurrent emergence of Klebsiella pneumoniae carbapenem resistance mediated by an inhibitory ompK36 mRNA secondary structure
err2022-09-12
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errOAAI
errWong, Joshua L. C.; David, Sophia; Sanchez-Garrido, Julia; Woo, Jia Z.; Low, Wen Wen; Morecchiato, Fabio; Giani, Tommaso; Rossolini, Gian Maria; Beis, Konstantinos; Brett, Stephen J.; Clements, Abigail; Aanensen, David M.; Rouskin, Silvi; Frankel, Gad
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An intranasal ASO therapeutic targeting SARS-CoV-2
err2022-08-03
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errZhu, Chi; Lee, Justin Y.; Woo, Jia Z.; Xu, Lei; Nguyenla, Xammy; Yamashiro, Livia H.; Ji, Fei; Biering, Scott B.; Van Dis, Erik; Gonzalez, Federico; Fox, Douglas; Wehri, Eddie; Rustagi, Arjun; Pinsky, Benjamin A.; Schaletzky, Julia; Blish, Catherine A.; Chiu, Charles; Harris, Eva; Sadreyev, Ruslan I.; Stanley, Sarah; Kauppinen, Sakari; Rouskin, Silvi; Naar, Anders M.
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Web-based platform for analysis of RNA folding from high throughput chemical probing data
err2022-06-03
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errJurich, Christopher P.; Brivanlou, Amir; Rouskin, Silvi; Yesselman, Joseph D.
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Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells
err2022-03-02
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errOAAI
errLan, Tammy C. T.; Allan, Matty F.; Malsick, Lauren E.; Woo, Jia Z.; Zhu, Chi; Zhang, Fengrui; Khandwala, Stuti; Nyeo, Sherry S. Y.; Sun, Yu; Guo, Junjie U.; Bathe, Mark; Naar, Anders; Griffiths, Anthony; Rouskin, Silvi
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Differential translation of mRNA isoforms transcribed with distinct sigma factors
errRNA
IF5
err2021-04-29
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errOAAI
errMcCormick, Dylan M.; Lalanne, Jean-Benoit; Lan, Tammy C. T.; Rouskin, Silvi; Li, Gene-Wei
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Viral RNA structure analysis using DMS-MaPseq
errMETHODS
IF4.3
err2020-11-01
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errOAAI
errTomezsko, Phillip; Swaminathan, Harish; Rouskin, Silvi
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Life span extension by glucose restriction is abrogated by methionine supplementation: Cross-talk between glucose and methionine and implication of methionine as a key regulator of life span
err2020-08-07
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errZou, Ke; Rouskin, Silvia; Dervishi, Kevin; McCormick, Mark A.; Sasikumar, Arjun; Deng, Changhui; Chen, Zhibing; Kaeberlein, Matt; Brem, Rachel B.; Polymenis, Michael; Kennedy, Brian K.; Weissman, Jonathan S.; Zheng, Jiashun; Ouyang, Qi; Li, Hao
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A Stress Response that Monitors and Regulates mRNA Structure Is Central to Cold Shock Adaptation
err2018-04-01
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errZhang, Yan; Burkhardt, David H.; Rouskin, Silvi; Li, Gene-Wei; Weissman, Jonathan S.; Gross, Carol A.
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Operon mRNAs are organized into ORF-centric structures that predict translation efficiency
err2017-01-31
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errOAAI
errBurkhardt, David H.; Rouskin, Silvi; Zhang, Yan; Li, Gene-Wei; Weissman, Jonathan S.; Gross, Carol A.
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