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Shuangsang Fang

bgi

8H-index
33Paper Count
575Citation Count
Published Papers 9
Publication Date
RegFormer: a single-cell foundation model powered by gene regulatory hierarchies
err2026-05-05
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errLuni Hu; Hua Qin; Yilin Zhang; Yi Lu; Ping Qiu; Zhihan Guo; Lei Cao; Wenjian Jiang; Yixin Shen; Qianqian Chen; Yanbang Shang; Tianyi Xia; Ziqing Deng; Hansheng Zhao; Xun Xu; Shuangsang Fang; Yuxiang Li; Yong Zhang
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BioLLM: A standardized framework for integrating and benchmarking single-cell foundation models
err2025-07-30
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errPing Qiu; Qianqian Chen; Hua Qin; Shuangsang Fang; Yilin Zhang; Yanlin Zhang; Tianyi Xia; Lei Cao; Yong Zhang; Xiaodong Fang; Yuxiang Li; Luni Hu
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Stereopy: modeling comparative and spatiotemporal cellular heterogeneity via multi-sample spatial transcriptomics
err2025-04-21
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errFang, Shuangsang; Xu, Mengyang; Cao, Lei; Liu, Xiaobin; Bezulj, Marija; Tan, Liwei; Li, Yao; Xia, Tianyi; Guo, Longyu; Kovacevic, Vladimir; Hui, Junhou; Guo, Lidong; Liu, Chao; Cheng, Mengnan; Lin, Li'ang; Wen, Zhenbin; Josic, Bojana; Milicevic, Nikola; Qiu, Ping; Lu, Qin; Li, Yumei; Wang, Leying; Hu, Luni; Zhang, Chao; Kang, Qiang; Chen, Fengzhen; Li, Junhua; Li, Mei; Li, Shengkang; Zhao, Yi; Zhang, Yong; Chen, Ao; Li, Yuxiang; Xu, Xun
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ST-GEARS: Advancing 3D downstream research through accurate spatial information recovery
err2024-09-06
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errXia, Tianyi; Hu, Luni; Zuo, Lulu; Cao, Lei; Zhang, Yunjia; Xu, Mengyang; Lu, Qin; Zhang, Lei; Pan, Taotao; Zhang, Bohan; Ma, Bowen; Chen, Chuan; Guo, Junfu; Shi, Chang; Li, Mei; Liu, Chao; Li, Yuxiang; Zhang, Yong; Fang, Shuangsang
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spatiAlign: an unsupervised contrastive learning model for data integration of spatially resolved transcriptomics
err2024-07-19
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errZhang, Chao; Liu, Lin; Zhang, Ying; Li, Mei; Fang, Shuangsang; Kang, Qiang; Chen, Ao; Xu, Xun; Zhang, Yong; Li, Yuxiang
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Deciphering spatial domains from spatially resolved transcriptomics with Siamese graph autoencoder
err2024-02-20
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errCao, Lei; Yang, Chao; Hu, Luni; Jiang, Wenjian; Ren, Yating; Xia, Tianyi; Xu, Mengyang; Ji, Yishuai; Li, Mei; Xu, Xun; Li, Yuxiang; Zhang, Yong; Fang, Shuangsang
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EAGS: efficient and adaptive Gaussian smoothing applied to high-resolved spatial transcriptomics
err2024-02-20
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errLv, Tongxuan; Zhang, Ying; Li, Mei; Kang, Qiang; Fang, Shuangsang; Zhang, Yong; Brix, Susanne; Xu, Xun
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Computational Approaches and Challenges in Spatial Transcriptomics
err2022-10-14
err31
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errFang, Shuangsang; Chen, Bichao; Zhang, Yong; Sun, Haixi; Liu, Longqi; Liu, Shiping; Li, Yuxiang; Xu, Xun
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Database Resources of the National Genomics Data Center in 2020
err2019-11-08
err169
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errZhang, Zhang; Zhao, Wenming; Xiao, Jingfa; Bao, Yiming; He, Shunmin; Zhang, Guoqing; Li, Yixue; Zhao, Guoping; Chen, Runsheng; Gao, Yang; Zhang, Chao; Yuan, Liyun; Xu, Shuhua; Ning, Zhilin; Lu, Yan; Zeng, Jingyao; Yuan, Na; Zhu, Junwei; Pan, Mengyu; Zhang, Hao; Wang, Qi; Shi, Shuo; Jiang, Meiye; Lu, Mingming; Qian, Qiheng; Gao, Qianwen; Shang, Yunfei; Wang, Jinyue; Du, Zhenglin; Tian, Dongmei; Wang, Pei; Tang, Bixia; Li, Cuiping; Teng, Xufei; Liu, Xiaonan; Zou, Dong; Song, Shuhui; Xiong, Zhuang; Li, Mengwei; Yang, Fei; Ma, Yingke; Sang, Jian; Li, Zhaohua; Li, Rujiao; Wang, Zhonghuang; Zhu, Qianghui; Li, Xin; Zhang, Sisi; Kang, Hailong; Dong, Lili; Ying, Cui; Duan, Guangya; Li, Menghua; Zhi, Xiaoyang; Ling, Yunchao; Cao, Ruifang; Jiang, Zhao; Zhou, Haokui; Lv, Daqing; Liu, Wan; Klenk, Hans-Peter; Zhang, Yadong; Zhang, Zhewen; Chen, Tingting; Chen, Xu; Wang, Yanqing; Wu, Song; Gong, Zheng; Chen, Meili; Fang, Shuangsang; Zhang, Lili; Guo, Jincheng; Niu, Yiwei; Wu, Yang; Li, Hui; Zhao, Lianhe; Li, Xiyuan; Teng, Xueyi; Sun, Xianhui; Sun, Liang; Zhao, Yi; Wang, Jiajia; Zhang, Peng; Li, Yanyan; Zheng, Yu; Chen, Xiaomin; Xue, Hua; Teng, Yiheng; Kang, Quan; Hao, Yajing; Cao, Jiabao; Liu, Lin; Li, Zhao; Li, Qianpeng; Du, Qiang; Abbasi, Amir A.; Shireen, Huma; Pervaiz, Nashaiman; Batool, Fatima; Raza, Rabail Z.; Ma, Lina; Niu, Guangyi; Zhang, Yuansheng; Zhu, Tongtong; Hao, Lili; Wang, Guoliang; Yan, Jun; Li, Chen; Wang, Zhennan; Wang, Xiangfeng; Li, Zhonghai; Zhang, Yang; Wang, Houling; Zhang, Yi; Xia, Xinli; Guo, Hongwei; Zhu, Junwen; Zhou, Qing; Kang, Hongen; Lan, Li; Zhang, Xin; Xue, Yongbiao; Sun, Yubin; Zhai, Shuang; Yu, Lei; Sun, Mingyuan; Chen, Huanxin; Hu, Hui; Guo, An-Yuan; Lin, Shaofeng; Xue, Yu; Wang, Chenwei; Ning, Wanshan; Zhang, Xinxin; Xiao, Yun; Li, Xia; Tu, Yiran; Wu, Wanying; Ji, Peifeng; Zhao, Fangqing; Luo, Hao; Gao, Feng; Guo, Yaping; Yuan, Hao; Zhang, Yong E.; Zhang, Qiong; Zhou, Jiaqi; Huang, Zhou; Cui, Qinghua; Miao, Ya-Ru; Ruan, Chen; Yuan, Chunhui; Chen, Ming; Jin, Jin-Pu; Tian, Feng; Gao, Ge; Shi, Ying; Yao, Lan; Li, Xiangshang; Li, Chuan-Yun; Tang, Qing; Peng, Di
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