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V

Vipin Kumar

Broad Institute of MIT and Harvard

14H-index
52Paper Count
1.7KCitation Count
Published Papers 12
Publication Date
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Single-nucleus multimodal spatial transcriptomics reveals spatial colocalization of neoantigen-expressing tumor cells and cognate T cells
errNature Biotechnology
IF41.7
err2026-07-22
err0
PREAI
errAdi Nagler; Amit Sud; Jack Y. Ghannam; Lucas Pomerance; Camila Robles-Oteiza; Alexander B. Afeyan; Jackson A. Weir; Andrew J. C. Russell; Wesley S. Lu; McKayla Van Orden; Andrea Sonnenholzner; Giovanni J. Marrero; Qiyu Gong; Vipin Kumar; Kun Huang; Chloe Tu; Emma Lin; Bohoon Shim; Gabriel R. De Oliveira; MacLean C. Sellars; Charles H. Yoon; David A. Reardon; Toni K. Choueiri; Lars R. Olsen; Sabina Signoretti; Patrick A. Ott; David A. Braun; Giacomo Oliveira; Shuqiang Li; Kenneth J. Livak; Nir Hacohen; Fei Chen; Catherine J. Wu
errShare
errSave
Exponential synchronization of neutral-type neural networks with leakage and mixed delays on time scales
errJournal of the Franklin Institute
IF4.2
err2026-01-05
err0
errOAAI
errVipin Kumar; Roberto Guglielmi
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errSave
JASPAR 2026: expansion of transcription factor binding profiles and integration of deep learning models
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-12-01
err0
errOAAI
errOvek baydar, Damla; Rauluseviciute, Ieva; Aronsen, Dina R.; Blanc-Mathieu, Romain; Bonthuis, Ine; De beukelaer, Herman; Ferenc, Katalin; Jegou, Alice; Kumar, Vipin; Lemma, Roza Berhanu; Lucas, Jeremy; Pochon, Mathis; Yun, Chang M.; Ramalingam, Vivekanandan; Deshpande, Salil Sanjay; Patel, Aman; Marinov, Georgi k; Wang, Austin T.; Aguirre, Alejandro; Castro-Mondragon, Jaime a; Baranasic, Damir; Cheneby, Jeanne; Gundersen, Sveinung; Johansen, Morten; Khan, Aziz; Kuijjer, Marieke L.; Hovig, Eivind; Lenhard, Boris; Sandelin, Albin; Vandepoele, Klaas; Wasserman, Wyeth w; Parcy, Francois; Kundaje, Anshul; Mathelier, Anthony
errShare
errSave
Scalable spatial transcriptomics through computational array reconstruction
errNATURE BIOTECHNOLOGY
IF41.7
err2025-04-03
err0
PREAI
errHu, Chenlei; Borji, Mehdi; Marrero, Giovanni J.; Kumar, Vipin; Weir, Jackson A.; Kammula, Sachin V.; Macosko, Evan Z.
errShare
errSave
JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-11-14
err109
errOAAI
errRauluseviciute, Ieva; Riudavets-Puig, Rafael; Blanc-Mathieu, Romain; Castro-Mondragon, Jaime A.; Ferenc, Katalin; Kumar, Vipin; Lemma, Roza Berhanu; Lucas, Jeremy; Cheneby, Jeanne; Baranasic, Damir; Khan, Aziz; Fornes, Oriol; Gundersen, Sveinung; Johansen, Morten; Hovig, Eivind; Lenhard, Boris; Sandelin, Albin; Wasserman, Wyeth W.; Parcy, Francois; Mathelier, Anthony
errShare
errSave
Reversible Protection and Targeted Delivery of DNA Origami with a Disulfide-Containing Cationic Polymer
errSMALL
IF12.1
err2023-11-02
err2
errOAAI
errYoussef, Sarah; Tsang, Emily; Samanta, Anirban; Kumar, Vipin; Gothelf, Kurt V.
errShare
errSave
Triplex-Forming Peptide Nucleic Acid Controls Dynamic Conformations of RNA Bulges
errJOURNAL OF THE AMERICAN CHEMICAL SOCIETY
IF15.6
err2023-05-08
err8
errOAAI
errRyan, Christopher A.; Rahman, Md Motiar; Kumar, Vipin; Rozners, Eriks
errShare
errSave
MoDLE: high-performance stochastic modeling of DNA loop extrusion interactions
errGENOME BIOLOGY
IF9.4
err2022-11-30
err5
errOAAI
errRossini, Roberto; Kumar, Vipin; Mathelier, Anthony; Rognes, Torbjorn; Paulsen, Jonas
errShare
errSave
An Integrated Quantitative Proteomics Workflow for Cancer Biomarker Discovery and Validation in Plasma
errFRONTIERS IN ONCOLOGY
IF3.3
err2020-09-23
err32
errOAAI
errKumar, Vipin; Ray, Sandipan; Ghantasala, Saicharan; Srivastava, Sanjeeva
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errSave
BHi-Cect: a top-down algorithm for identifying the multi-scale hierarchical structure of chromosomes
errNUCLEIC ACIDS RESEARCH
IF13.1
err2020-02-03
err4
errOAAI
errKumar, Vipin; Leclerc, Simon; Taniguchi, Yuichi
errShare
errSave
Toehold-Mediated Strand Displacement in a Triplex Forming Nucleic Acid Clamp for Reversible Regulation of Polymerase Activity and Protein Expression
errCHEMISTRY-A EUROPEAN JOURNAL
IF3.7
err2019-08-29
err10
PREAI
errNguyen, Thuy J. D.; Manuguerra, Ilenia; Kumar, Vipin; Gothelf, Kurt, V
errShare
errSave
Nucleic Acids as a Nature-Inspired Scaffold for Macromolecular Prodrugs of Nucleoside Analogues
errADVANCED SCIENCE
IF14.1
err2019-01-28
err5
errOAAI
errKrueger, Franziska; Kumar, Vipin; Monge, Pere; Conzelmann, Carina; Smith, Nikaia; Gothelf, Kurt V.; Tolstrup, Martin; Muench, Jan; Zelikin, Alexander N.
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errSave

Research Directions

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Co-authors
Cooperation Journals
T
Toni K. Choueiri
H-index: 149 · Papers: 2.4K
S
Sabina Signoretti
H-index: 130 · Papers: 1.2K
D
David A. Reardon
H-index: 119 · Papers: 1.2K
C
Catherine J. Wu
H-index: 97 · Papers: 1.3K
A
Anshul Kundaje
H-index: 85 · Papers: 620
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