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J

Jie Liu

university of michigan system

15H-index
77Paper Count
980Citation Count
Published Papers 25
Publication Date
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Statistically rigorous and computationally efficient chromatin stripe detection with Quagga
errGenome Research
IF5.5
err2026-01-01
err0
PREAI
errFeng, Fan; Moran, Sean; Hansen, Anders S.; Zhang, Xiaotian; Liu, Jie
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An integrated view of the structure and function of the human 4D nucleome
errNature
IF48.5
err2025-12-17
err0
errOAAI
errJob Dekker; Betul Akgol Oksuz; Yang Zhang; Ye Wang; Miriam K. Minsk; Shuzhen Kuang; Liyan Yang; Johan H. Gibcus; Nils Krietenstein; Oliver J. Rando; Jie Xu; Derek H. Janssens; Steven Henikoff; Alexander Kukalev; Willemin Andréa; Warren Winick-Ng; Rieke Kempfer; Ana Pombo; Miao Yu; Pradeep Kumar; Liguo Zhang; Andrew S. Belmont; Takayo Sasaki; Tom van Schaik; Laura Brueckner; Daan Peric-Hupkes; Bas van Steensel; Ping Wang; Haoxi Chai; Minji Kim; Yijun Ruan; Ran Zhang; Sofia A. Quinodoz; Prashant Bhat; Mitchell Guttman; Wenxin Zhao; Shu Chien; Yuan Liu; Sergey V. Venev; Dariusz Plewczynski; Ibai Irastorza Azcarate; Dominik Szabó; Christoph J. Thieme; Teresa Szczepińska; Mateusz Chiliński; Kaustav Sengupta; Mattia Conte; Andrea Esposito; Alex Abraham; Ruochi Zhang; Yuchuan Wang; Xingzhao Wen; Qiuyang Wu; Yang Yang; Jie Liu; Lorenzo Boninsegna; Asli Yildirim; Yuxiang Zhan; Andrea Maria Chiariello; Simona Bianco; Lindsay Lee; Ming Hu; Yun Li; R. Jordan Barnett; Ashley L. Cook; Daniel J. Emerson; Claire Marchal; Peiyao Zhao; Peter J. Park; Burak H. Alver; Andrew J. Schroeder; Rahi Navelkar; Clara Bakker; William Ronchetti; Shannon Ehmsen; Alexander D. Veit; Nils Gehlenborg; Ting Wang; Daofeng Li; Xiaotao Wang; Mario Nicodemi; Bing Ren; Sheng Zhong; Jennifer E. Phillips-Cremins; David M. Gilbert; Katherine S. Pollard; Frank Alber; Jian Ma; William S. Noble; Feng Yue
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CelLink: integrating single-cell multi-omics data with weak feature linkage and imbalanced cell populations
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-12-11
err0
errOAAI
errLuo, Xin; Huang, Yuanhao; Zeng, Haoxuan; Tao, Yicheng; Bao, Xinyu; Feng, Fan; Hopkirk, Alexander l; Pham, Thai; Bate, Thomas S. R.; Saunders, Diane C.; Orchard, Peter; Robertson, Cassie; Shrestha, Shristi; Spraggins, Jeffrey M.; Cartailler, Jean-Philippe; Parker, Stephen c J.; Brissova, Marcela; Liu, Jie
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errSave
The IGVF catalog-from genetic variation to function
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-12-01
err1
PREAI
errLi, Daofeng; Liu, Shane; Assis, Pedro R.; Li, Mingjie; Dong, Shengcheng; Whaling, Ian; Jolanki, Otto; Kagda, Meenakshi; Zhang, Wenjin; Macias-Velasco, Juan F.; Liu, Tianjie; Cody, Sarah; Antonacci-Fulton, Lucinda; Huang, Yuanhao; Liu, Jie; Montgomery, Michael T.; Zeiberg, Daniel; Jain, Shantanu; Pejaver, Vikas; Bergquist, Timothy; Chen, Yile; Radivojac, Predrag; Gersbach, Charles A.; Sherpa, Rintsen N.; Castro, Christopher P.; Boyle, Alan P.; Starita, Lea M.; Fowler, Douglas M.; Ahituv, Nadav; Dey, Kushal K.; Majoros, William H.; Reddy, Timothy E.; Craven, Mark; Sinha, Riya; Sverchkov, Yuriy; Cai, Xiangmeng; Nzima, Mpathi Z.; Calderwood, Michael A.; Rozowsky, Joel; Gerstein, Mark; Ma, Jian; Yue, Feng; Cherry, J. Michael; Love, Michael, I; Engreitz, Jesse M.; Hitz, Benjamin C.; Wang, Ting
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errSave
Developing a general AI model for integrating diverse genomic modalities and comprehensive genomic knowledge
errNucleic Acids Research
IF13.1
err2025-11-13
err0
errOAAI
errZhenhao Zhang; Xinyu Bao; Linghua Jiang; Xin Luo; Zheyu Zhang; Jing Yin; Meiqi Zhao; Yichun Wang; Annelise Comai; Joerg Waldhaus; Anders S Hansen; Wenbo Li; Jie Liu
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errSave
CHROMATIN REMODELING WITH COMBINED FACT AND BET INHIBITION DISRUPTS ONCOGENIC TRANSCRIPTION IN DIFFUSE MIDLINE GLIOMA
errNEURO-ONCOLOGY
IF13.4
err2025-11-01
err0
errOAAI
errHolliday, Holly; Khan, Aaminah; Ehteda, Anahid; Nguyen, Hieu; Ross, Samuel; Jayatilleke, Nisitha; Gopalakrishnan, Anjana; Wang, Eyden; Guo, Xinyi; Sanguino, Yolanda Colino; Kavanagh, Daisy; Liu, Jie; Lawrence, David; Sun, Claire; Lehmann, Rebecca; Ip, Chi Kin; Lee, Alvin; Li, Wenyan; Salomon, Robert; Firestein, Ron; Weatheritt, Robert; Valdes-Mora, Fatima; Dinger, Marcel; Phoenix, Timothy; Mayoh, Chelsea; Rayner, Benjamin; Tsoli, Maria; Ziegler, David
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errSave
Effect of Jardiance on glucose uptake into astrocytomas
errJOURNAL OF NEURO-ONCOLOGY
IF3.1
err2024-07-22
err1
errOAAI
errGhezzi, Chiara; Ellingson, Benjamin M.; Lai, Albert; Liu, Jie; Barrio, Jorge R.; Wright, Ernest M.
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errSave
Translating mesenchymal stem cell and their exosome research into GMP compliant advanced therapy products: Promises, problems and prospects
errMEDICINAL RESEARCH REVIEWS
IF11.6
err2023-12-14
err18
PREAI
errMa, Chui-Yan; Zhai, Yuqing; Li, Chung Tony; Liu, Jie; Xu, Xiang; Chen, Hao; Tse, Hung-Fat; Lian, Qizhou
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errSave
TCAF2 drives glioma cellular migratory/invasion properties through STAT3 signaling
errMOLECULAR AND CELLULAR BIOCHEMISTRY
IF3.7
err2023-11-29
err1
errOAAI
errYun, Debo; Liang, Jianshen; Wang, Xuya; Fan, Jikang; Wang, Xisen; Li, Jiabo; Ren, Xiao; Liu, Jie; Ren, Xiude; Zhang, Hao; Shang, Guanjie; Jin, Wenzhe; Chen, Lei; Li, Tao; Zhang, Chen; Yu, Shengping; Yang, Xuejun
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errSave
A generalizable framework to comprehensively predict epigenome, chromatin organization, and transcriptome
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-05-24
err5
errOAAI
errZhang, Zhenhao; Feng, Fan; Qiu, Yiyang; Liu, Jie
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errSave
GenomicKB: a knowledge graph for the human genome
errNUCLEIC ACIDS RESEARCH
IF13.1
err2022-11-01
err13
errOAAI
errFeng, Fan; Tang, Feitong; Gao, Yijia; Zhu, Dongyu; Li, Tianjun; Yang, Shuyuan; Yao, Yuan; Huang, Yuanhao; Liu, Jie
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errSave
Insufficient S-adenosylhomocysteine hydrolase compromises the beneficial effect of diabetic BMSCs on diabetic cardiomyopathy
errSTEM CELL RESEARCH & THERAPY
IF7.3
err2022-08-13
err3
errOAAI
errWang, Ying; Zhang, Yuying; Chen, Kegong; Liu, Jie; Wu, Donghong; Cheng, Yao; Wang, Hongjie; Li, Yanbo
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errSave
Characterizing collaborative transcription regulation with a graph-based deep learning approach
errplos biology
IF3.6
err2022-06-06
err1
errOAAI
errZhang, Zhenhao; Feng, Fan; Liu, Jie
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errSave
Connecting high-resolution 3D chromatin organization with epigenomics
errNATURE COMMUNICATIONS
IF15.7
err2022-04-19
err15
errOAAI
errFeng, Fan; Yao, Yuan; Wang, Xue Qing David; Zhang, Xiaotian; Liu, Jie
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errSave
Elevated salivary activity of mast cell chymase of periodontitis patients, and a new bradykinin generation cascade, mediating the cross-talks between mast cell and gingival fibroblast
errINTERNATIONAL IMMUNOPHARMACOLOGY
IF4.7
err2021-12-01
err0
PREAI
errLu, Xixi; Liu, Jie; Wei, Tao; Zhou, Xiaoying
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errSave
3′HS1 CTCF binding site in human β-globin locus regulates fetal hemoglobin expression
errELIFE
IF0
err2021-09-29
err12
PREAI
errHimadewi, Pamela; Wang, Xue Qing David; Feng, Fan; Gore, Haley; Liu, Yushuai; Yu, Lei; Kurita, Ryo; Nakamura, Yukio; Pfeifer, Gerd P.; Liu, Jie; Zhang, Xiaotian
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Efficacy and safety of ertugliflozin in patients with type 2 diabetes mellitus and established cardiovascular disease using insulin: A VERTIS CV substudy
errDIABETES OBESITY & METABOLISM
IF5.7
err2021-05-05
err6
errOAAI
errLingvay, Ildiko; Greenberg, Michelle; Gallo, Silvina; Shi, Harry; Liu, Jie; Gantz, Ira
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errSave
Preliminary research on the effects and mechanisms of umbilical cord-derived mesenchymal stem cells in streptozotocin-induced diabetic retinopathy
errINTERNATIONAL JOURNAL OF MOLECULAR MEDICINE
IF5.8
err2020-06-01
err7
errOAAI
errZhao, Ken; Liu, Jie; Dong, Gang; Xia, Huan; Wang, Pingan; Xiao, Xuan; Chen, Zhen
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CM082 Enhances the Efficacy of Chemotherapeutic Drugs by Inhibiting the Drug Efflux Function of ABCG2
errMOLECULAR THERAPY-ONCOLYTICS
IF0
err2020-03-01
err14
errOAAI
errXu, Lejia; Huang, Jiwei; Liu, Jie; Xi, Yun; Zheng, Zongheng; To, Kenneth K. W.; Chen, Zhen; Wang, Fang; Zhang, Yongming; Fu, Liwu
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errSave
p53 Integrates Temporal WDR5 Inputs during Neuroectoderm and Mesoderm Differentiation of Mouse Embryonic Stem Cells
errCELL REPORTS
IF6.9
err2020-01-01
err21
errOAAI
errLi, Qiang; Mao, Fengbiao; Zhou, Bo; Huang, Yuanhao; Zou, Zhenhua; denDekker, Aaron D.; Xu, Jing; Hou, Sean; Liu, Jie; Dou, Yali; Rao, Rajesh C.
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Research Directions

No research directions
Co-authors
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