Not logged in Protocol to set up the CellMinerCDB pharmacogenomics analysis web application with custom cell line data Elloumi, Fathi; Tlemsani, Camille; Heske, Christine M.; Pongor, Lorinc; Khandagale, Prashant; Varma, Sudhir; Meltzer, Paul S.; Khan, Javed; Reinhold, William C.; Pommier, Yves; Luna, Augustin Share Save
Web-based cross-database exploration of molecular pharmacology data from cancer cell lines and patient genomics Reinhold, William C.; Luna, Augustin; Elloumi, Fathi; Varma, Sudhir; Taniyama, Daiki; Mizunuma, Makito; del Rivero, Jaydira; Thomas, Anish; Reilly, Karyyne; Pacak, Karel; Aladjem, Mirit; Pommier, Yves Share Save
CellMinerCDB: NCATS Is a Web-Based Portal Integrating Public Cancer Cell Line Databases for Pharmacogenomic Explorations Reinhold, William C.; Wilson, Kelli; Elloumi, Fathi; Bradwell, Katie R.; Ceribelli, Michele; Varma, Sudhir; Wang, Yanghsin; Duveau, Damien; Menon, Nikhil; Trepel, Jane; Zhang, Xiaohu; Klumpp-Thomas, Carleen; Micheal, Samuel; Shinn, Paul; Luna, Augustin; Thomas, Craig; Pommier, Yves Share Save
Share Save
A brain proteomic signature of incipient Alzheimer's disease in young APOE ε4 carriers identifies novel drug targets Roberts, Jackson A.; Varma, Vijay R.; An, Yang; Varma, Sudhir; Candia, Julian; Fantoni, Giovanna; Tiwari, Vinod; Anerillas, Carlos; Williamson, Andrew; Saito, Atsushi; Loeffler, Tina; Schilcher, Irene; Moaddel, Ruin; Khadeer, Mohammed; Lovett, Jacqueline; Tanaka, Toshiko; Pletnikova, Olga; Troncoso, Juan C.; Bennett, David A.; Albert, Marilyn S.; Yu, Kaiwen; Niu, Mingming; Haroutunian, Vahram; Zhang, Bin; Peng, Junmin; Croteau, Deborah L.; Resnick, Susan M.; Gorospe, Myriam; Bohr, Vilhelm A.; Ferrucci, Luigi; Thambisetty, Madhav Share Save
Abnormal brain cholesterol homeostasis in Alzheimer's disease-a targeted metabolomic and transcriptomic study Varma, Vijay R.; Busra Luleci, H.; Oommen, Anup M.; Varma, Sudhir; Blackshear, Chad T.; Griswold, Michael E.; An, Yang; Roberts, Jackson A.; O'Brien, Richard; Pletnikova, Olga; Troncoso, Juan C.; Bennett, David A.; Cakir, Tunahan; Legido-Quigley, Cristina; Thambisetty, Madhav Share Save
Targeting abnormal metabolism in Alzheimer's disease: The Drug Repurposing for Effective Alzheimer's Medicines (DREAM) study Desai, Rishi J.; Varma, Vijay R.; Gerhard, Tobias; Segal, Jodi; Mahesri, Mufaddal; Chin, Kristyn; Nonnenmacher, Edward; Gabbeta, Avinash; Mammen, Anup M.; Varma, Sudhir; Horton, Daniel B.; Kim, Seoyoung C.; Schneeweiss, Sebastian; Thambisetty, Madhav Share Save
CellMiner Cross-Database (CellMinerCDB) version 1.2: Exploration of patient-derived cancer cell line pharmacogenomics Luna, Augustin; Elloumi, Fathi; Varma, Sudhir; Wang, Yanghsin; Rajapakse, Vinodh N.; Aladjem, Mirit, I; Robert, Jacques; Sander, Chris; Pommier, Yves; Reinhold, William C. Share Save
SCLC-CellMiner: A Resource for Small Cell Lung Cancer Cell Line Genomics and Pharmacology Based on Genomic Signatures Tlemsani, Camille; Pongor, Lorinc; Elloumi, Fathi; Girard, Luc; Huffman, Kenneth E.; Roper, Nitin; Varma, Sudhir; Luna, Augustin; Rajapakse, Vinodh N.; Sebastian, Robin; Kohn, Kurt W.; Krushkal, Julia; Aladjem, Mirit, I; Teicher, Beverly A.; Meltzer, Paul S.; Reinhold, William C.; Minna, John D.; Thomas, Anish; Pommier, Yves Share Save
Share Save
Associations of epigenome-wide DNA methylation patterns with chemosensitivity and chemoresistance of small cell lung cancer cell lines Krushkal, Julia; Silvers, Thomas; Sonkin, Dmitriy; Vural, Suleyman; Connelly, John; Varma, Sudhir; Meltzer, Paul S.; Reinhold, William C.; Rapisarda, Annamaria; Evans, David; Pommier, Yves; Teicher, Beverly A. Share Save
Mitochondrial tyrosyl-DNA phosphodiesterase 2 and its TDP2S short isoform Huang, Shar-yin N.; Dalla Rosa, Ilaria; Michaels, Stephanie A.; Tulumello, David V.; Agama, Keli; Khiati, Salim; Jean, Sae Rin; Baechler, Simone A.; Factor, Valentina M.; Varma, Sudhir; Murai, Junko; Jenkins, Lisa M. Miller; Kelley, Shana O.; Pommier, Yves Share Save
SPARCL1 Accelerates Symptom Onset in Alzheimer's Disease and Influences Brain Structure and Function During Aging Seddighi, Sahba; Varma, Vijay R.; An, Yang; Varma, Sudhir; Beason-Held, Lori L.; Tanaka, Toshiko; Kitner-Triolo, Melissa H.; Kraut, Michael A.; Davatzikos, Christos; Thambisetty, Madhav Share Save
Evidence for brain glucose dysregulation in Alzheimer's disease An, Yang; Varma, Vijay R.; Varma, Sudhir; Casanova, Ramon; Dammer, Eric; Pletnikova, Olga; Chia, Chee W.; Egan, Josephine M.; Ferrucci, Luigi; Troncoso, Juan; Levey, Allan I.; Lah, James; Seyfried, Nicholas T.; Legido-Quigley, Cristina; O'Brien, Richard; Thambisetty, Madhav Share Save
Cytidine Deaminase Deficiency Reveals New Therapeutic Opportunities against Cancer Mameri, Hamza; Bieche, Ivan; Meseure, Didier; Marangoni, Elisabetta; Buhagiar-Labarchede, Geraldine; Nicolas, Andre; Vacher, Sophie; Onclercq-Delic, Rosine; Rajapakse, Vinodh; Varma, Sudhir; Reinhold, William C.; Pommier, Yves; Amor-Gueret, Mounira Share Save
Metabolic network failures in Alzheimer's disease: A biochemical road map Toledo, Jon B.; Arnold, Matthias; Kastenmueller, Gabi; Chang, Rui; Baillie, Rebecca A.; Han, Xianlin; Thambisetty, Madhav; Tenenbaum, Jessica D.; Suhre, Karsten; Thompson, J. Will; St John-Williams, Lisa; MahmoudianDehkordi, Siamak; Rotroff, Daniel M.; Jack, John R.; Motsinger-Reif, Alison; Risacher, Shannon L.; Blach, Colette; Lucas, Joseph E.; Massaro, Tyler; Louie, Gregory; Zhu, Hongjie; Dallmann, Guido; Klavins, Kristaps; Koal, Therese; Kim, Sungeun; Nho, Kwangsik; Shen, Li; Casanova, Ramon; Varma, Sudhir; Legido-Quigley, Cristina; Moseley, M. Arthur; Zhu, Kuixi; Henrion, Marc Y. R.; van der Lee, Sven J.; Harms, Amy C.; Demirkan, Ayse; Hankemeier, Thomas; van Duijn, Cornelia M.; Trojanowski, John Q.; Shaw, Leslie M.; Saykin, Andrew J.; Weiner, Michael W.; Doraiswamy, P. Murali; Kaddurah-Daouk, Rima Share Save
The NCI-60 Methylome and Its Integration into CellMiner Reinhold, William C.; Varma, Sudhir; Sunshine, Margot; Rajapakse, Vinodh; Luna, Augustin; Kohn, Kurt W.; Stevenson, Holly; Wang, Yonghong; Heyn, Holger; Nogales, Vanesa; Moran, Sebastian; Goldstein, David J.; Doroshow, James H.; Meltzer, Paul S.; Esteller, Manel; Pommier, Yves Share Save
Share Save
Alpha-2 macroglobulin in Alzheimer's disease: a marker of neuronal injury through the RCAN1 pathway Varma, V. R.; Varma, S.; An, Y.; Hohman, T. J.; Seddighi, S.; Casanova, R.; Beri, A.; Dammer, E. B.; Seyfried, N. T.; Pletnikova, O.; Moghekar, A.; Wilson, M. R.; Lah, J. J.; O'Brien, R. J.; Levey, A. I.; Troncoso, J. C.; Albert, M. S.; Thambisetty, M. Share Save
A Gene Expression Signature Associated with Overall Survival in Patients with Hepatocellular Carcinoma Suggests a New Treatment Strategy Gillet, Jean-Pierre; Andersen, Jesper B.; Madigan, James P.; Varma, Sudhir; Bagni, Rachel K.; Powell, Katie; Burgan, William E.; Wu, Chung-Pu; Calcagno, Anna Maria; Ambudkar, Suresh V.; Thorgeirsson, Snorri S.; Gottesman, Michael M. Share Save
.png){kind=icon}
.png){kind=icon}
.png){kind=icon}
.png){kind=icon}
.png){kind=icon}
Share.png){kind=icon}
Save
Not logged in.png){kind=icon}