Not logged in Pipeline Olympics: continuable benchmarking of computational workflows for DNA methylation sequencing data against an experimental gold standard Lin, Yu-Yu; Breuer, Kersten; Weichenhan, Dieter; Lafrenz, Pascal; Sarnataro, Antonella; Wilk, Agata; Chepeleva, Maryna; Mucke, Oliver; Schonung, Maximilian; Petermann, Franziska; Kensche, Philip Reiner; Weiser, Lena; Thommen, Frank; Giacomelli, Gideon; Nordstroem, Karl; Gonzalez-Avalos, Edahi; Merkel, Angelika; Kretzmer, Helene; Fischer, Jonas; Kramer, Stephen; Iskar, Murat; Wolf, Stephan; Buchhalter, Ivo; Esteller, Manel; Lawerenz, Christian; Twardziok, Sven; Zapatka, Marc; Hovestadt, Volker; Schlesner, Matthias; Schulz, Marcel H.; Hoffmann, Steve; Gerhauser, Clarissa; Walter, Jorn; Hartmann, Mark; Lipka, Daniel B.; Assenov, Yassen; Bock, Christoph; Plass, Christoph; Toth, Reka; Lutsik, Pavlo Share Save
Deposition of onco-histone H3.3-G34W leads to DNA repair deficiency and activates cGAS/STING-mediated immune responses Mancarella, Daniela; Ellinghaus, Henrik; Sigismondo, Gianluca; Veselinov, Olivera; Kuehn, Alexander; Goyal, Ashish; Hartmann, Mark; Fellenberg, Joerg; Krijgsveld, Jeroen; Plass, Christoph; Popanda, Odilia; Schmezer, Peter; Bakr, Ali Share Save
Multi-omic and functional analysis for classification and treatment of sarcomas with FUS-TFCP2 or EWSR1-TFCP2 fusions Schoepf, Julia; Uhrig, Sebastian; Heilig, Christoph E.; Lee, Kwang-Seok; Walther, Tatjana; Carazzato, Alexander; Dobberkau, Anna Maria; Weichenhan, Dieter; Plass, Christoph; Hartmann, Mark; Diwan, Gaurav D.; Carrero, Zunamys, I; Ball, Claudia R.; Hohl, Tobias; Kindler, Thomas; Rudolph-Haehnel, Patricia; Helm, Dominic; Schneider, Martin; Nilsson, Anna; Ora, Ingrid; Imle, Roland; Banito, Ana; Russell, Robert B.; Jones, Barbara C.; Lipka, Daniel B.; Glimm, Hanno; Huebschmann, Daniel; Hartmann, Wolfgang; Froehling, Stefan; Scholl, Claudia Share Save
Genomic, transcriptomic, functional, and mechanistic characterization of rhabdomyosarcoma with FUS-TFCP2 or EWSR1-TFCP2 fusions Schoepf, Julia; Uhrig, Sebastian; Heilig, Christoph E.; Lee, Kwang-Seok; Walther, Tatjana; Carazzato, Alexander; Dobberkau, Anna Maria; Weichenhan, Dieter; Plass, Christoph; Hartmann, Mark; Diwan, Gaurav; Carrero, Zunamys; Ball, Claudia R.; Hohl, Tobias; Kindler, Thomas; Rudolph-Hahnel, Patricia; Nilsson, Anna; Ora, Ingrid; Imle, Roland; Banito, Ana; Russell, Robert; Jones, Barbara C.; Lipka, Daniel B.; Glimm, Hanno; Hubschmann, Daniel; Hartmann, Wolfgang; Frohling, Stefan; Scholl, Claudia Share Save
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International Consensus Definition of DNA Methylation Subgroups in Juvenile Myelomonocytic Leukemia Schoenung, Maximilian; Meyer, Julia; Noellke, Peter; Olshen, Adam B.; Hartmann, Mark; Murakami, Norihiro; Wakamatsu, Manabu; Okuno, Yusuke; Plass, Christoph; Loh, Mignon L.; Niemeyer, Charlotte M.; Muramatsu, Hideki; Flotho, Christian; Stieglitz, Elliot; Lipka, Daniel B. Share Save
Globally altered epigenetic landscape and delayed osteogenic differentiation in H3.3-G34W-mutant giant cell tumor of bone Lutsik, Pavlo; Baude, Annika; Mancarella, Daniela; Oz, Simin; Kuhn, Alexander; Toth, Reka; Hey, Joschka; Toprak, Umut H.; Lim, Jinyeong; Viet Ha Nguyen; Jiang, Chao; Mayakonda, Anand; Hartmann, Mark; Rosemann, Felix; Breuer, Kersten; Vonficht, Dominik; Gruenschlaeger, Florian; Lee, Suman; Schuhmacher, Maren Kirstin; Kusevic, Denis; Jauch, Anna; Weichenhan, Dieter; Zustin, Jozef; Schlesner, Matthias; Haas, Simon; Park, Joo Hyun; Park, Yoon Jung; Oppermann, Udo; Jeltsch, Albert; Haller, Florian; Fellenberg, Joerg; Lindroth, Anders M.; Plass, Christoph Share Save
Azacitidine is effective for targeting leukemia-initiating cells in juvenile myelomonocytic leukemia Krombholz, Christopher F.; Gallego-Villar, Lorena; Sahoo, Sushree S.; Panda, Pritam K.; Wlodarski, Marcin W.; Aumann, Konrad; Hartmann, Mark; Lipka, Daniel B.; Daskalakis, Michael; Plass, Christoph; Niemeyer, Charlotte M.; Erlacher, Miriam; Flotho, Christian Share Save
Reactivation of endogenous retroviral elements via treatment with DNMT- and HDAC-inhibitors Daskalakis, Michael; Brocks, David; Sheng, Yi-Hua; Islam, Md Saiful; Ressnerova, Alzbeta; Assenov, Yassen; Milde, Till; Oehme, Ina; Witt, Olaf; Goyal, Ashish; Kuehn, Alexander; Hartmann, Mark; Weichenhan, Dieter; Jung, Manfred; Plass, Christoph Share Save
RAS-pathway mutation patterns define epigenetic subclasses in juvenile myelomonocytic leukemia Lipka, Daniel B.; Witte, Tania; Toth, Reka; Yang, Jing; Wiesenfarth, Manuel; Noellke, Peter; Fischer, Alexandra; Brocks, David; Gu, Zuguang; Park, Jeongbin; Strahm, Brigitte; Wlodarski, Marcin; Yoshimi, Ayami; Claus, Rainer; Luebbert, Michael; Busch, Hauke; Boerries, Melanie; Hartmann, Mark; Schoenung, Maximilian; Kilik, Umut; Langstein, Jens; Wierzbinska, Justyna A.; Pabst, Caroline; Garg, Swati; Catala, Albert; De Moerloose, Barbara; Dworzak, Michael; Hasle, Henrik; Locatelli, Franco; Masetti, Riccardo; Schmugge, Markus; Smith, Owen; Stary, Jan; Ussowicz, Marek; van den Heuvel-Eibrink, Marry M.; Assenov, Yassen; Schlesner, Matthias; Niemeyer, Charlotte; Flotho, Christian; Plass, Christoph Share Save
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Dynamic modulation of Dnmt2-dependent tRNA methylation by the micronutrient queuine Mueller, Martin; Hartmann, Mark; Schuster, Isabelle; Bender, Sebastian; Thuering, Kathrin L.; Helm, Mark; Katze, Jon R.; Nellen, Wolfgang; Lyko, Frank; Ehrenhofer-Murray, Ann E. Share Save
Effects of long-term nitroglycerin treatment on endothelial nitric oxide synthase (NOS III) gene expression, NOS III-Mediated superoxide production, and vascular NO bioavailability Münzel, T; Li, H; Mollnau, H; Hink, U; Matheis, E; Hartmann, M; Oelze, M; Skatchkov, M; Warnholtz, A; Duncker, L; Meinertz, T; Förstermann, U Share Save
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