Not logged in CyVerse: Cyberinfrastructure for open science Swetnam, Tyson L.; Antin, Parker B.; Bartelme, Ryan; Bucksch, Alexander; Camhy, David; Chism, Greg; Choi, Illyoung; Cooksey, Amanda M.; Cosi, Michele; Cowen, Cindy; Culshaw-Maurer, Michael; Davey, Robert; Davey, Sean; Devisetty, Upendra; Edgin, Tony; Edmonds, Andy; Fedorov, Dmitry; Frady, Jeremy; Fonner, John; Gillan, Jeffrey K.; Hossain, Iqbal; Joyce, Blake; Lang, Konrad; Lee, Tina; Littin, Shelley; Mcewen, Ian; Merchant, Nirav; Micklos, David; Nelson, Andrew; Ramsey, Ashley; Roberts, Sarah; Sarando, Paul; Skidmore, Edwin; Song, Jawon; Sprinkle, Mary Margaret; Srinivasan, Sriram; Stanzione, Dan; Strootman, Jonathan D.; Stryeck, Sarah; Tuteja, Reetu; Vaughn, Matthew; Wali, Mojib; Wall, Mariah; Walls, Ramona; Wang, Liya; Wickizer, Todd; Williams, Jason; Wregglesworth, John; Lyons, Eric Share Save
Round Trip: An Automated Pipeline for Experimental Design, Execution, and Analysis Bryce, Daniel; Goldman, Robert P.; DeHaven, Matthew; Beal, Jacob; Bartley, Bryan; Nguyen, Tramy T.; Walczak, Nicholas; Weston, Mark; Zheng, George; Nowak, Josh; Lee, Peter; Stubbs, Joe; Gaffney, Niall; Vaughn, Matthew W.; Myers, Chris John; Moseley, Robert C.; Haase, Steven; Deckard, Anastasia; Cummins, Bree; Leiby, Nick Share Save
iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology Bolduc, Benjamin; Zablocki, Olivier; Guo, Jiarong; Zayed, Ahmed A.; Vik, Dean; Dehal, Paramvir; Wood-Charlson, Elisha M.; Arkin, Adam; Merchant, Nirav; Pett-Ridge, Jennifer; Roux, Simon; Vaughn, Matthew; Sullivan, Matthew B. Share Save
Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots Wear, Emily E.; Song, Jawon; Zynda, Gregory J.; Mickelson-Young, Leigh; LeBlanc, Chantal; Lee, Tae-Jin; Deppong, David O.; Allen, George C.; Martienssen, Robert A.; Vaughn, Matthew W.; Hanley-Bowdoin, Linda; Thompson, William F. Share Save
Arabidopsis DNA Replication Initiates in Intergenic, AT-Rich Open Chromatin1[OPEN] Wheeler, Emily; Brooks, Ashley M.; Concia, Lorenzo; Vera, Daniel L.; Wear, Emily E.; LeBlanc, Chantal; Ramu, Umamaheswari; Vaughn, Matthew W.; Bass, Hank W.; Martienssen, Robert A.; Thompson, William F.; Hanley-Bowdoin, Linda Share Save
An 'eFP-Seq Browser' for visualizing and exploring RNA sequencing data Sullivan, Alexander; Purohit, Priyank K.; Freese, Nowlan H.; Pasha, Asher; Esteban, Eddi; Waese, Jamie; Wu, Alison; Chen, Michelle; Chin, Chih Y.; Song, Richard; Watharkar, Sneha R.; Chan, Agnes P.; Krishnakumar, Vivek; Vaughn, Matthew W.; Town, Chris; Loraine, Ann E.; Provart, Nicholas J. Share Save
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Genome-Wide Analysis of the Arabidopsis Replication Timing Program Concia, Lorenzo; Brooks, Ashley M.; Wheeler, Emily; Zynda, Gregory J.; Wear, Emily E.; LeBlanc, Chantal; Song, Jawon; Lee, Tae-Jin; Pascuzzi, Pete E.; Martienssen, Robert A.; Vaughn, Matthew W.; Thompson, William F.; Hanley-Bowdoin, Linda Share Save
The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology Friesner, Joanna; Assmann, Sarah M.; Bastow, Ruth; Bailey-Serres, Julia; Beynon, Jim; Brendel, Volker; Buell, C. Robin; Bucksch, Alexander; Busch, Wolfgang; Demura, Taku; Dinneny, Jose R.; Doherty, Colleen J.; Eveland, Andrea L.; Falter-Braun, Pascal; Gehan, Malia A.; Gonzales, Michael; Grotewold, Erich; Gutierrez, Rodrigo; Kramer, Ute; Krouk, Gabriel; Ma, Shisong; Markelz, R. J. Cody; Megraw, Molly; Meyers, Blake C.; Murray, James A. H.; Provart, Nicholas J.; Rhee, Sue; Smith, Roger; Spalding, Edgar P.; Taylor, Crispin; Teal, Tracy K.; Torii, Keiko U.; Town, Chris; Vaughn, Matthew; Vierstra, Richard; Ware, Doreen; Wilkins, Olivia; Williams, Cranos; Brady, Siobhan M. Share Save
Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips Wear, Emily E.; Song, Jawon; Zynda, Gregory J.; LeBlanc, Chantal; Lee, Tae-Jin; Mickelson-Young, Leigh; Concia, Lorenzo; Mulvaney, Patrick; Szymanski, Eric S.; Allen, George C.; Martienssen, Robert A.; Vaughn, Matthew W.; Hanley-Bowdoin, Linda; Thompson, William F. Share Save
ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery Krishnakumar, Vivek; Contrino, Sergio; Cheng, Chia-Yi; Belyaeva, Irina; Ferlanti, Erik S.; Miller, Jason R.; Vaughn, Matthew W.; Micklem, Gos; Town, Christopher D.; Chan, Agnes P. Share Save
RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome Li, Qing; Gent, Jonathan I.; Zynda, Greg; Song, Jawon; Makarevitch, Irina; Hirsch, Cory D.; Hirsch, Candice N.; Dawe, R. Kelly; Madzima, Thelma F.; McGinnis, Karen M.; Lisch, Damon; Schmitz, Robert J.; Vaughn, Matthew W.; Springer, Nathan M. Share Save
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Genetic Perturbation of the Maize Methylome Li, Qing; Eichten, Steven R.; Hermanson, Peter J.; Zaunbrecher, Virginia M.; Song, Jawon; Wendt, Jennifer; Rosenbaum, Heidi; Madzima, Thelma F.; Sloan, Amy E.; Huang, Ji; Burgess, Daniel L.; Richmond, Todd A.; McGinnis, Karen M.; Meeley, Robert B.; Danilevskaya, Olga N.; Vaughn, Matthew W.; Kaeppler, Shawn M.; Jeddeloh, Jeffrey A.; Springer, Nathan M. Share Save
Araport: the Arabidopsis Information Portal Krishnakumar, Vivek; Hanlon, Matthew R.; Contrino, Sergio; Ferlanti, Erik S.; Karamycheva, Svetlana; Kim, Maria; Rosen, Benjamin D.; Cheng, Chia-Yi; Moreira, Walter; Mock, Stephen A.; Stubbs, Joseph; Sullivan, Julie M.; Krampis, Konstantinos; Miller, Jason R.; Micklem, Gos; Vaughn, Matthew; Town, Christopher D. Share Save
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Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations Eichten, Steven R.; Briskine, Roman; Song, Jawon; Li, Qing; Swanson-Wagner, Ruth; Hermanson, Peter J.; Waters, Amanda J.; Starr, Evan; West, Patrick T.; Tiffin, Peter; Myers, Chad L.; Vaughn, Matthew W.; Springer, Nathan M. Share Save
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