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Structural dynamics of the TPR domain of the peroxisomal cargo receptor Pex5 in Trypanosoma Banasik, Michal; Napolitano, Valeria; Blat, Artur; Abdulkarim, Karim; Plewka, Jacek; Czaplewski, Cezary; Gieldon, Artur; Kozak, Maciej; Wladyka, Benedykt; Popowicz, Grzegorz; Dubin, Grzegorz Share Save
Assessment of Four Theoretical Approaches to Predict Protein Flexibility in the Crystal Phase and Solution Dziadek, L. J.; Sieradzan, A. K.; Czaplewski, C.; Zalewski, M.; Banas, F.; Toczek, M.; Nisterenko, W.; Grudinin, S.; Liwo, A.; Gieldon, A. Share Save
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Exploring the inhibitory potential of in silico-designed small peptides on Helicobacter pylori Hp0231 (DsbK), a periplasmic oxidoreductase involved in disulfide bond formation Roszczenko-Jasinska, Paula; Gieldon, Artur; Mazur, Dominika; Spodzieja, Marta; Plichta, Maciej; Czaplewski, Cezary; Bal, Wojciech; Jagusztyn-Krynicka, Elzbieta K.; Bartosik, Dariusz Share Save
Impact of AlphaFold on structure prediction of protein complexes: The CASP15-CAPRI experiment Lensink, Marc F.; Brysbaert, Guillaume; Raouraoua, Nessim; Bates, Paul A.; Giulini, Marco; Honorato, Rodrigo V.; van Noort, Charlotte; Teixeira, Joao M. C.; Bonvin, Alexandre M. J. J.; Kong, Ren; Shi, Hang; Lu, Xufeng; Chang, Shan; Liu, Jian; Guo, Zhiye; Chen, Xiao; Morehead, Alex; Roy, Raj S.; Wu, Tianqi; Giri, Nabin; Quadir, Farhan; Chen, Chen; Cheng, Jianlin; Del Carpio, Carlos A.; Ichiishi, Eichiro; Rodriguez-Lumbreras, Luis A.; Fernandez-Recio, Juan; Harmalkar, Ameya; Chu, Lee-Shin; Canner, Sam; Smanta, Rituparna; Gray, Jeffrey J.; Li, Hao; Lin, Peicong; He, Jiahua; Tao, Huanyu; Huang, Sheng-You; Roel-Touris, Jorge; Jimenez-Garcia, Brian; Christoffer, Charles W.; Jain, Anika J.; Kagaya, Yuki; Kannan, Harini; Nakamura, Tsukasa; Terashi, Genki; Verburgt, Jacob C.; Zhang, Yuanyuan; Zhang, Zicong; Fujuta, Hayato; Sekijima, Masakazu; Kihara, Daisuke; Khan, Omeir; Kotelnikov, Sergei; Ghani, Usman; Padhorny, Dzmitry; Beglov, Dmitri; Vajda, Sandor; Kozakov, Dima; Negi, Surendra S.; Ricciardelli, Tiziana; Barradas-Bautista, Didier; Cao, Zhen; Chawla, Mohit; Cavallo, Luigi; Oliva, Romina; Yin, Rui; Cheung, Melyssa; Guest, Johnathan D.; Lee, Jessica; Pierce, Brian G.; Shor, Ben; Cohen, Tomer; Halfon, Matan; Schneidman-Duhovny, Dina; Zhu, Shaowen; Yin, Rujie; Sun, Yuanfei; Shen, Yang; Maszota-Zieleniak, Martyna; Bojarski, Krzysztof K.; Lubecka, Emilia A.; Marcisz, Mateusz; Danielsson, Annemarie; Dziadek, Lukasz; Gaardlos, Margrethe; Gieldon, Artur; Liwo, Adam; Samsonov, Sergey A.; Slusarz, Rafal; Zieba, Karolina; Sieradzan, Adam K.; Czaplewski, Cezary; Kobayashi, Shinpei; Miyakawa, Yuta; Kiyota, Yasuomi; Takeda-Shitaka, Mayuko; Olechnovic, Kliment; Valancauskas, Lukas; Dapkunas, Justas; Venclovas, Ceslovas; Wallner, Bjorn; Yang, Lin; Hou, Chengyu; He, Xiaodong; Guo, Shuai; Jiang, Shenda; Ma, Xiaoliang; Duan, Rui; Qui, Liming; Xu, Xianjin; Zou, Xiaoqin; Velankar, Sameer; Wodak, Shoshana J. Share Save
Pragmatic Coarse-Graining of Proteins: Models and Applications Borges-Araujo, Luis; Patmanidis, Ilias; Singh, Akhil P.; Santos, Lucianna H. S.; Sieradzan, Adam K.; Vanni, Stefano; Czaplewski, Cezary; Pantano, Sergio; Shinoda, Wataru; Monticelli, Luca; Liwo, Adam; Marrink, Siewert J.; Souza, Paulo C. T. Share Save
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Optimization of parallel implementation of UNRES package for coarse-grained simulations to treat large proteins Sieradzan, Adam K.; Sans-Duno, Jordi; Lubecka, Emilia A.; Czaplewski, Cezary; Lipska, Agnieszka G.; Ocetkiewicz, Krzysztof M.; Proficz, Jerzy; Czarnul, Pawel; Krawczyk, Henryk; Liwo, Adam; Leszczyfiski, Henryk Share Save
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Prediction of protein assemblies, the next frontier: The CASP14-CAPRI experiment Lensink, Marc F.; Brysbaert, Guillaume; Mauri, Theo; Nadzirin, Nurul; Velankar, Sameer; Chaleil, Raphael A. G.; Clarence, Tereza; Bates, Paul A.; Kong, Ren; Liu, Bin; Yang, Guangbo; Liu, Ming; Shi, Hang; Lu, Xufeng; Chang, Shan; Roy, Raj S.; Quadir, Farhan; Liu, Jian; Cheng, Jianlin; Antoniak, Anna; Czaplewski, Cezary; Gieldon, Artur; Kogut, Mateusz; Lipska, Agnieszka G.; Liwo, Adam; Lubecka, Emilia A.; Maszota-Zieleniak, Martyna; Sieradzan, Adam K.; Slusarz, Rafal; Wesolowski, Patryk A.; Zieba, Karolina; Del Carpio Munoz, Carlos A.; Ichiishi, Eiichiro; Harmalkar, Ameya; Gray, Jeffrey J.; Bonvin, Alexandre M. J. J.; Ambrosetti, Francesco; Vargas Honorato, Rodrigo; Jandova, Zuzana; Jimenez-Garcia, Brian; Koukos, Panagiotis I.; Van Keulen, Siri; Van Noort, Charlotte W.; Reau, Manon; Roel-Touris, Jorge; Kotelnikov, Sergei; Padhorny, Dzmitry; Porter, Kathryn A.; Alekseenko, Andrey; Ignatov, Mikhail; Desta, Israel; Ashizawa, Ryota; Sun, Zhuyezi; Ghani, Usman; Hashemi, Nasser; Vajda, Sandor; Kozakov, Dima; Rosell, Mireia; Rodriguez-Lumbreras, Luis A.; Fernandez-Recio, Juan; Karczynska, Agnieszka; Grudinin, Sergei; Yan, Yumeng; Li, Hao; Lin, Peicong; Huang, Sheng-You; Christoffer, Charles; Terashi, Genki; Verburgt, Jacob; Sarkar, Daipayan; Aderinwale, Tunde; Wang, Xiao; Kihara, Daisuke; Nakamura, Tsukasa; Hanazono, Yuya; Gowthaman, Ragul; Guest, Johnathan D.; Yin, Rui; Taherzadeh, Ghazaleh; Pierce, Brian G.; Barradas-Bautista, Didier; Cao, Zhen; Cavallo, Luigi; Oliva, Romina; Sun, Yuanfei; Zhu, Shaowen; Shen, Yang; Park, Taeyong; Woo, Hyeonuk; Yang, Jinsol; Kwon, Sohee; Won, Jonghun; Seok, Chaok; Kiyota, Yasuomi; Kobayashi, Shinpei; Harada, Yoshiki; Takeda-Shitaka, Mayuko; Kundrotas, Petras J.; Singh, Amar; Vakser, Ilya A.; Dapkunas, Justas; Olechnovic, Kliment; Venclovas, Ceslovas; Duan, Rui; Qiu, Liming; Xu, Xianjin; Zhang, Shuang; Zou, Xiaoqin; Wodak, Shoshana J. Share Save
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Improved Consensus-Fragment Selection in Template-Assisted Prediction of Protein Structures with the UNRES Force Field in CASP13 Karczynska, Agnieszka S.; Zieba, Karolina; Uciechowska, Urszula; Mozolewska, Magdalena A.; Krupa, Pawel; Lubecka, Emilia A.; Lipska, Agnieszka G.; Sikorska, Celina; Samsonov, Sergey A.; Sieradzan, Adam K.; Gieldon, Artur; Liwo, Adam; Slusarz, Rafal; Slusarz, Magdalena; Lee, Jooyoung; Joo, Keehyoung; Czaplewski, Cezary Share Save
Assessment of chemical-crosslink-assisted protein structure modeling in CASP13 (vol 87, pg 1283, 2019) Fajardo, J. Eduardo; Shrestha, Rojan; Gil, Nelson; Belsom, Adam; Crivelli, Silvia N.; Czaplewski, Cezary; Fidelis, Krzysztof; Grudinin, Sergei; Karasikov, Mikhail; Karczynska, Agnieszka S.; Kryshtafovych, Andriy; Leitner, Alexander; Liwo, Adam; Lubecka, Emilia A.; Monastyrskyy, Bohdan; Pages, Guillaume; Rappsilber, Juri; Sieradzan, Adam K.; Sikorska, Celina; Trabjerg, Esben; Fiser, Andras Share Save
Blind prediction of homo- and hetero-protein complexes: The CASP13-CAPRI experiment Lensink, Marc F.; Brysbaert, Guillaume; Nadzirin, Nurul; Velankar, Sameer; Chaleil, Raphael A. G.; Gerguri, Tereza; Bates, Paul A.; Laine, Elodie; Carbone, Alessandra; Grudinin, Sergei; Kong, Ren; Liu, Ran-Ran; Xu, Xi-Ming; Shi, Hang; Chang, Shan; Eisenstein, Miriam; Karczynska, Agnieszka; Czaplewski, Cezary; Lubecka, Emilia; Lipska, Agnieszka; Krupa, Pawel; Mozolewska, Magdalena; Golon, Lukasz; Samsonov, Sergey; Liwo, Adam; Crivelli, Silvia; Pages, Guillaume; Karasikov, Mikhail; Kadukova, Maria; Yan, Yumeng; Huang, Sheng-You; Rosell, Mireia; Rodriguez-Lumbreras, Luis A.; Romero-Durana, Miguel; Diaz-Bueno, Lucia; Fernandez-Recio, Juan; Christoffer, Charles; Terashi, Genki; Shin, Woong-Hee; Aderinwale, Tunde; Maddhuri Venkata Subraman, Sai Raghavendra; Kihara, Daisuke; Kozakov, Dima; Vajda, Sandor; Porter, Kathryn; Padhorny, Dzmitry; Desta, Israel; Beglov, Dmitri; Ignatov, Mikhail; Kotelnikov, Sergey; Moal, Iain H.; Ritchie, David W.; de Beauchene, Isaure Chauvot; Maigret, Bernard; Devignes, Marie-Dominique; Echartea, Maria E. Ruiz; Barradas-Bautista, Didier; Cao, Zhen; Cavallo, Luigi; Oliva, Romina; Cao, Yue; Shen, Yang; Baek, Minkyung; Park, Taeyong; Woo, Hyeonuk; Seok, Chaok; Braitbard, Merav; Bitton, Lirane; Scheidman-Duhovny, Dina; Dapkunas, Justas; Olechnovic, Kliment; Venclovas, Ceslovas; Kundrotas, Petras J.; Belkin, Saveliy; Chakravarty, Devlina; Badal, Varsha D.; Vakser, Ilya A.; Vreven, Thom; Vangaveti, Sweta; Borrman, Tyler; Weng, Zhiping; Guest, Johnathan D.; Gowthaman, Ragul; Pierce, Brian G.; Xu, Xianjin; Duan, Rui; Qiu, Liming; Hou, Jie; Merideth, Benjamin Ryan; Ma, Zhiwei; Cheng, Jianlin; Zou, Xiaoqin; Koukos, Panos I.; Roel-Touris, Jorge; Ambrosetti, Francesco; Geng, Cunliang; Schaarschmidt, Jorg; Trellet, Mikael E.; Melquiond, Adrien S. J.; Xue, Li; Jimenez-Garcia, Brian; van Noort, Charlotte W.; Honorato, Rodrigo V.; Bonvin, Alexandre M. J. J.; Wodak, Shoshana J. Share Save
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