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Zhiping Weng

university of massachusetts chan medical school

119H-index
537Paper Count
6.7WCitation Count
Published Papers 196
Publication Date
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An encyclopedia of human enhancer–gene regulatory interactions
errNature
IF48.5
err2026-07-15
err0
errOAAI
errAndreas R. Gschwind; Kristy S. Mualim; Alireza Karbalayghareh; Maya U. Sheth; Kushal K. Dey; Evelyn Jagoda; Ramil N. Nurtdinov; Wang Xi; Anthony S. Tan; James Galante; Hank Jones; X. Rosa Ma; David Yao; Dulguun Amgalan; Judhajeet Ray; Chad J. Munger; Joseph Nasser; Žiga Avsec; Benjamin T. James; Muhammad S. Shamim; Neva C. Durand; Suhas S. P. Rao; Ragini Mahajan; Benjamin R. Doughty; Kalina Andreeva; Jacob C. Ulirsch; Kaili Fan; Elizabeth M. Perez; Tri C. Nguyen; David R. Kelley; Hilary K. Finucane; Jill E. Moore; Zhiping Weng; Manolis Kellis; Michael C. Bassik; Berk Ustun; Alkes L. Price; Michael A. Beer; Roderic Guigó; John A. Stamatoyannopoulos; Erez Lieberman Aiden; William J. Greenleaf; Christina S. Leslie; Lars M. Steinmetz; Anshul Kundaje; Jesse M. Engreitz
errShare
errSave
Aub, Vasa, and Armi concentration in phase-separated nuage is dispensable for piRNA biogenesis and transposon silencing
errRNA
IF5
err2026-03-01
err1
PREAI
errHo, Samantha; Rice, Nicholas P.; Yu, Tianxiong; Weng, Zhiping; Theurkauf, William E.
errShare
errSave
Transposable element–gene chimera cartography, origination and role in enhancing transcriptome plasticity
errNature Structural & Molecular Biology
IF10.1
err2026-02-25
err0
errOAAI
errYoungseo Cheon; Erik Glen Alvstad; Denis Torre; Daniel Tu Quach; Jennifer Nguyen; Kwangbeom Hyun; Mingqi Zhou; Tianxiong Yu; Liang Liu; Yoseop Yoon; Fairlie Reese; Lauren Faraone; Yingcong Li; Frederick J. Arnold; Yesai S. Fstkchyan; Uttiya Basu; Evgeny Kvon; Enza Maria Valente; Jessica Sook Yuin Ho; Minji Byun; Ernesto Guccione; Yongsheng Shi; Zhiping Weng; Marcus Seldin; Ivan Marazzi
errShare
errSave
An expanded registry of candidate cis-regulatory elements
errNature
IF48.5
err2026-01-07
err0
errOAAI
errJill E. Moore; Henry E. Pratt; Kaili Fan; Nishigandha Phalke; Jonathan Fisher; Shaimae I. Elhajjajy; Gregory Andrews; Mingshi Gao; Nicole Shedd; Yu Fu; Matthew C. Lacadie; Jair Meza; Mansi Khandpekar; Mohit Ganna; Eva Choudhury; Ross Swofford; Huong Phan; Christian C. Ramirez; Maxwell Campbell; Mary Likhite; Nina P. Farrell; Annika K. Weimer; Anusri Pampari; Vivekanandan Ramalingam; Fairlie Reese; Beatrice Borsari; Xuezhu Yu; Eve Wattenberg; Marina Ruiz-Romero; Milad Razavi-Mohseni; Jinrui Xu; Timur Galeev; Andres Colubri; Michael A. Beer; Roderic Guigó; Mark B. Gerstein; Jesse M. Engreitz; Mats Ljungman; Timothy E. Reddy; Michael P. Snyder; Charles B. Epstein; Elizabeth Gaskell; Bradley E. Bernstein; Diane E. Dickel; Axel Visel; Len A. Pennacchio; Ali Mortazavi; Anshul Kundaje; Zhiping Weng
errShare
errSave
FAVOR 2.0: A reengineered functional annotation of variants online resource for interpreting genomic variation
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-12-01
err1
PREAI
errZhou, Hufeng; Verma, Vineet; Li, Xihao; Li, Zilin; Shedd, Nicole; Li, Thomas Cheng; Yang, Haoyu; Zhang, Alvin; Borsari, Beatrice; Buyske, Steven; Gerstein, Mark; Matise, Tara; Zody, Michael C.; Neale, Benjamin; Weng, Zhiping; Sunyaev, Shamil R.; Lin, Xihong
errShare
errSave
Adaptive evolution of koala retrovirus transcription silencing and what it means for conservation
errClinical and Translational Medicine
IF6.8
err2025-07-15
err0
errOAAI
errKeith J. Chappell; Michaela B. J. Blyton; Zhiping Weng; William E. Theurkauf
errShare
errSave
Evolution of KoRV-A transcriptional silencing in wild koalas
errCELL
IF42.5
err2025-04-01
err0
PREAI
errYu, Tianxiong; Blyton, Michaela B. J.; Abajorga, Milky; Koppetsch, Birgit S.; Ho, Samantha; Xu, Bo; Hu, Zhongren; Luban, Jeremy; Chappell, Keith; Weng, Zhiping; Theurkauf, William E.
errShare
errSave
RGT-61159, Best-in-Class Small Molecule Inhibitor of MYB Via Selective RNA Splicing Alteration, Showed Robust Anti-Tumor Activity across AML Tumor Models Harboring Common Genetic Lesions
errBLOOD
IF23.1
err2024-11-05
err0
PREAI
errLu, Norman; Soulard, Patricia; Kay, Ibrahim; Li, Kai; Gu, Xiubin; Sadlish, Heather; Lee, Jay; Elhawary, Mariam; Rotelli, Michael; Hasson, Sam; Wynn, Thomas; Yates, Chris; Weng, Zhiping; Xi, Simon; Wager, Travis
errShare
errSave
Using a comprehensive atlas and predictive models to reveal the complexity and evolution of brain-active regulatory elements
errSCIENCE ADVANCES
IF12.5
err2024-05-24
err1
errOAAI
errPratt, Henry E.; Andrews, Gregory; Shedd, Nicole; Phalke, Nishigandha; Li, Tongxin; Pampari, Anusri; Jensen, Matthew; Wen, Cindy; Gandal, Michael J.; Geschwind, Daniel H.; Gerstein, Mark; Moore, Jill; Kundaje, Anshul; Colubri, Andres; Weng, Zhiping
errShare
errSave
RGT-M001, a first-in-class small molecule mRNA degrader of the oncogenic transcription factor c-Myb, demonstrated remarkable single agent anti-tumor efficacy in cancer patient-derived xenograft model
errCANCER RESEARCH
IF16.6
err2024-03-22
err0
PREAI
errLu, Norman; Soulard, Patricia; Li, Kay; Sadlish, Heather; Yates, Chris; Gu, Xiubin; Kays, Ibrahim; Lee, Jae; Hasson, Sam; Weng, Zhiping; Xi, Simon; Wager, Travis
errShare
errSave
Beyond genome-wide association studies: Investigating the role of noncoding regulatory elements in primary sclerosing cholangitis
errHEPATOLOGY COMMUNICATIONS
IF4.6
err2023-10-01
err3
errOAAI
errPratt, Henry E.; Wu, Tong; Elhajjajy, Shaimae; Zhou, Jeffrey; Fitzgerald, Kate; Fazzio, Tom; Weng, Zhiping; Pratt, Daniel S.
errShare
errSave
Downregulation of Hsp90 and the antimicrobial peptide Mtk suppresses poly(GR)-induced neurotoxicity in C9ORF72-ALS/FTD
errNEURON
IF15
err2023-05-01
err7
errOAAI
errLee, Soojin; Jun, Yong -Woo; Linares, Gabriel R.; Butler, Brandon; Yuva-Adyemir, Yeliz; Moore, Jill; Krishnan, Gopinath; Ruiz-Juarez, Bryan; Santana, Manuel; Pons, Marine; Silverman, Neal; Weng, Zhiping; Ichida, Justin K.; Gao, Fen-Biao
errShare
errSave
Toward a comprehensive catalog of regulatory elements
errHUMAN GENETICS
IF3.6
err2023-03-19
err9
PREAI
errFan, Kaili; Pfister, Edith; Weng, Zhiping
errShare
errSave
Epigenetic and chromosomal features drive transposon insertion in Drosophila melanogaster
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-02-10
err6
errOAAI
errCao, Jichuan; Yu, Tianxiong; Xu, Bo; Hu, Zhongren; Zhang, Xiao-ou; Theurkauf, William E.; Weng, Zhiping
errShare
errSave
The transcription factor TCFL5 responds to A-MYB to elaborate the male meiotic program in mice
errREPRODUCTION
IF3.7
err2023-02-01
err12
errOAAI
errCecchini, Katharine; Biasini, Adriano; Yu, Tianxiong; Saflund, Martin; Mou, Haiwei; Arif, Amena; Eghbali, Atiyeh; Colpan, Cansu; Gainetdinov, Ildar; de Rooij, Dirk G.; Weng, Zhiping; Zamore, Phillip D.; Ozata, Deniz M.
errShare
errSave
FAVOR: functional annotation of variants online resource and annotator for variation across the human genome
errNUCLEIC ACIDS RESEARCH
IF13.1
err2022-11-09
err41
errOAAI
errZhou, Hufeng; Arapoglou, Theodore; Li, Xihao; Li, Zilin; Zheng, Xiuwen; Moore, Jill; Asok, Abhijith; Kumar, Sushant; Blue, Elizabeth E.; Buyske, Steven; Cox, Nancy; Felsenfeld, Adam; Gerstein, Mark; Kenny, Eimear; Li, Bingshan; Matise, Tara; Philippakis, Anthony; Rehm, Heidi L.; Sofia, Heidi J.; Snyder, Grace; Weng, Zhiping; Neale, Benjamin; Sunyaev, Shamil R.; Lin, Xihong
errShare
errSave
A-MYB/TCFL5 regulatory architecture ensures the production of pachytene piRNAs in placental mammals
errRNA
IF5
err2022-10-14
err13
errOAAI
errYu, Tiangxiong; Biasini, Adriano; Cecchini, Katharine; Saflund, Martin; Mou, Haiwei; Arif, Amena; Eghbali, Atiyeh; De Rooij, Dirk G.; Weng, Zhiping; Zamore, Phillip D.; Ozata, Deniz M.
errShare
errSave
Flnc: Machine Learning Improves the Identification of Novel Long Noncoding RNAs from Stand-Alone RNA-Seq Data
errnon coding rna research
IF3
err2022-10-13
err3
errOAAI
errLi, Zixiu; Zhou, Peng; Kwon, Euijin; Fitzgerald, Katherine A.; Weng, Zhiping; Zhou, Chan
errShare
errSave
GLH/VASA helicases promote germ granule formation to ensure the fidelity of piRNA-mediated transcriptome surveillance
errNATURE COMMUNICATIONS
IF15.7
err2022-09-09
err10
errOAAI
errChen, Wenjun; Brown, Jordan S.; He, Tao; Wu, Wei-Sheng; Tu, Shikui; Weng, Zhiping; Zhang, Donglei; Lee, Heng-Chi
errShare
errSave
Building integrative functional maps of gene regulation
errHUMAN MOLECULAR GENETICS
IF3.2
err2022-09-09
err4
errOAAI
errXu, Jinrui; Pratt, Henry E.; Moore, Jill E.; Gerstein, Mark B.; Weng, Zhiping
errShare
errSave

Research Directions

No research directions
Co-authors
Cooperation Journals
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Gonçalo R. Abecasis
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