Not logged in COMPARATIVE PATHOLOGY OF A RAREMN1::PATZ1-FUSION NEUROEPITHELIAL PRIMARY TUMOR AND RECURRENCE DEMONSTRATING MARKED HETEROGENEITY, POTENTIAL CHANGES IN TUMOR IMMUNE COMPOSITION, AND CELL-STATE TRANSITIONS Nasajpour, Emon; Wei, Ruolun; Panovska, Dena; Xing, Lulu; Dhami, Tejas; Che, Caden; Rabin, Leif; Feng, Zhi-Ping; Lyle, Geoffrey; Beale, Holly; Kephart, Ellen; Vaske, Olena; Geraldo, Ana Filipa; Newman, John; Vogel, Hannes; Mahaney, Kelly; Campen, Cynthia; Jones, Jackie; Ligon, Keith; Mueller, Sabine; Petritsch, Claudia Share Save
Comparative analysis of RNA expression identifies effective targeted drug in myoepithelial carcinoma Vasquez, Yvonne A.; Sanders, Lauren; Beale, Holly C.; Lyle, A. Geoffrey; Kephart, Ellen T.; Learned, Katrina; Peralez, Jennifer; Li, Amy; Huang, Min; Pyke-Grimm, Kimberly A.; Tan, Serena Y.; Salama, Sofie R.; Haussler, David; Bjork, Isabel; Vaske, Olena M.; Spunt, Sheri L. Share Save
Comparative analysis of RNA expression in a single institution cohort of pediatric cancer patients Vasquez, Yvonne A.; Beale, Holly C.; Sanders, Lauren; Lyle, A. Geoffrey; Kephart, Ellen T.; Learned, Katrina; Thompson, Drew; Peralez, Jennifer; Li, Amy; Huang, Min; Pyke-Grimm, Kimberly A.; Salama, Sofie R.; Haussler, David; Bjork, Isabel; Sheri, L. Spunt Share Save
Machine learning multi-omics analysis reveals cancer driver dysregulation in pan-cancer cell lines compared to primary tumors Sanders, Lauren M.; Chandra, Rahul; Zebarjadi, Navid; Beale, Holly C.; Lyle, A. Geoffrey; Rodriguez, Analiz; Kephart, Ellen Towle; Pfeil, Jacob; Cheney, Allison; Learned, Katrina; Currie, Rob; Gitlin, Leonid; Vengerov, David; Haussler, David; Salama, Sofie R.; Vaske, Olena M. Share Save
A Functional Precision Medicine Pipeline Combines Comparative Transcriptomics and Tumor Organoid Modeling to Identify Bespoke Treatment Strategies for Glioblastoma Reed, Megan R.; Lyle, A. Geoffrey; De Loose, Annick; Maddukuri, Leena; Learned, Katrina; Beale, Holly C.; Kephart, Ellen T.; Cheney, Allison; van den Bout, Anouk; Lee, Madison P.; Hundley, Kelsey N.; Smith, Ashley M.; DesRochers, Teresa M.; Vibat, Cecile Rose T.; Gokden, Murat; Salama, Sofie; Wardell, Christopher P.; Eoff, Robert L.; Vaske, Olena M.; Rodriguez, Analiz Share Save
The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets Beale, Holly C.; Roger, Jacquelyn M.; Cattle, Matthew A.; McKay, Liam T.; Thompson, Drew K. A.; Learned, Katrina; Lyle, A. Geoffrey; Kephart, Ellen T.; Currie, Rob; Du Linh Lam; Sanders, Lauren; Pfeil, Jacob; Vivian, John; Bjork, Isabel; Salama, Sofie R.; Haussler, David; Vaske, Olena M. Share Save
Identification of a differentiation stall in epithelial mesenchymal transition in histone H3-mutant diffuse midline glioma Sanders, Lauren M.; Cheney, Allison; Seninge, Lucas; van den Bout, Anouk; Chen, Marissa; Beale, Holly C.; Kephart, Ellen Towle; Pfeil, Jacob; Learned, Katrina; Lyle, A. Geoffrey; Bjork, Isabel; Haussler, David; Salama, Sofie R.; Vaske, Olena M. Share Save
Determining accuracy of RNA sequencing data for gene expression profiling of single samples Beale, Holly C.; Roger, Jacquelyn M.; Cattle, Matthew A.; McKay, Liam T.; Learned, Katrina; Lyle, Geoff; Kephart, Ellen T.; Currie, Rob; Du Linh Lam; Sanders, Lauren; Pfeil, Jacob; Vivian, John; Bjork, Isabel; Salama, Sofie R.; Haussler, David; Vaske, Olena M. Share Save
SHARED LONG NON-CODING RNA DYSREGULATION IN HISTONE H3 K27M GLIOMAS AND PF-A EPENDYMOMAS Sanders, Lauren; Cheney, Allison; Field, Andrew; Beale, Holly; Kephart, Ellen; Learned, Katrina; Bjork, Isabel; Durbin, Ann; Lyle, Geoff; Pfeil, Jacob; Salama, Sofie; Haussler, David; Vaske, Olena Share Save
Identification of gene expression differences between primary pediatric tumors and their PDX models Pfeil, Jacob J.; Lee, Alex G.; Sayles, Leanne C.; Kephart, Ellen T.; Beale, Holly C.; Sanders, Lauren M.; Morozova, Olena; Salama, Sofie R.; Sweet-Cordero, Alejandro; Haussler, David Share Save
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modMine: flexible access to modENCODE data Contrino, Sergio; Smith, Richard N.; Butano, Daniela; Carr, Adrian; Hu, Fengyuan; Lyne, Rachel; Rutherford, Kim; Kalderimis, Alex; Sullivan, Julie; Carbon, Seth; Kephart, Ellen T.; Lloyd, Paul; Stinson, E. O.; Washington, Nicole L.; Perry, Marc D.; Ruzanov, Peter; Zha, Zheng; Lewis, Suzanna E.; Stein, Lincoln D.; Micklem, Gos Share Save
The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details Washington, Nicole L.; Stinson, E. O.; Perry, Marc D.; Ruzanov, Peter; Contrino, Sergio; Smith, Richard; Zha, Zheng; Lyne, Rachel; Carr, Adrian; Lloyd, Paul; Kephart, Ellen; McKay, Sheldon J.; Micklem, Gos; Stein, Lincoln D.; Lewis, Suzanna E. Share Save
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