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S

Shirley W. I. Siu

Faculty of Applied Sciences

27H-index
99Paper Count
3.3KCitation Count
Published Papers 47
Publication Date
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A sequence-based deep learning framework (PepInter) for protein–peptide interaction representation learning with pretrained protein language models
errCommunications Chemistry
IF6.2
err2026-08-20
err0
errOAAI
errXinke Zhan; Silong Zhai; Tiantao Liu; Shaolong Lin; Tao Bi; Bingwen Zhu; Shirley W. I. Siu
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MEGCAM: MEta-Graph and Causal Attention Method for Drug Repurposing on Heterogeneous Drug–Target–Disease Knowledge Network
errJournal of Chemical Information and Modeling
IF5.3
err2026-05-14
err0
PREAI
errDongqi Liu; Miaoting Hu; Xinke Zhan; Shirley W. I. Siu
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BERT-T6: Toward High-Accuracy T6SS Bacterial Toxin Identification Using a Protein Language Model
errJournal of Chemical Information and Modeling
IF5.3
err2026-05-07
err0
PREAI
errXianwei Mo; Jianxiu Cai; Shirley W. I. Siu
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errSave
Multi-AOP: a lightweight multi-view deep learning framework for antioxidant peptide discovery
errBioresources and Bioprocessing
IF5.1
err2026-02-02
err0
errOAAI
errJianxiu Cai; Xinpo Lou; Chak Fong Chong; Deepa Alex; Joel P. Arrais; Yapeng Wang; Shirley W. I. Siu
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CrossToGene: A bidirectional cross-modality interaction framework for predicting spatial gene expression from histopathological images
errEngineering Applications of Artificial Intelligence
IF8
err2026-01-02
err0
PREAI
errXiangyu Ma; Xinke Zhan; Yutao Hu; Shirley W.I. Siu
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errSave
MambaTransDTA: A Hybrid Mamba-Transformer Architecture for Accurate Drug-Target Binding Affinity Prediction
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2025-12-01
err0
PREAI
errLou, Xinpo; Cai, Jianxiu; Liu, Qidong; Siu, Shirley W. I.
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MAARDTI: a multi-perspective attention aggregation model for the prediction of drug–target interactions
errDigital Discovery
IF5.6
err2025-09-28
err0
errOAAI
errXinke Zhan; Tiantao Liu; Changqing Yu; Yu-An Huang; Zhuhong You; Shirley W. I. Siu
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errSave
A TRPV1 agonist from the transcriptome profiling of Dipsastraea rotumana inhibits neuroinflammation in vivo through the NF-κB and MAPK pathways
errPharmacological Research
IF10.5
err2025-06-25
err0
errOAAI
errHanbin Chen; Nan Xu; Hiotong Kam; Chen Zhao; Qian Chen; Guangyi Fan; Shirley Weng In Siu; Clarence Tsun Ting Wong; Jian-Wen Qiu; Alex Kwok-Kuen Cheung; Ariane Teixeira; Gandhi Rádis‑Baptista; Pak Kin Wong; Shang Li; Guiyi Gong; Simon Ming-Yuen Lee
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Data-driven revolution of enzyme catalysis from the perspective of reactions, pathways, and enzymes
errCELL REPORTS PHYSICAL SCIENCE
IF7.3
err2025-03-01
err0
errOAAI
errLiu, Tiantao; Zhai, Silong; Zhan, Xinke; Siu, Shirley W. I.
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BERT-AmPEP60: A BERT-Based Transfer Learning Approach to Predict the Minimum Inhibitory Concentrations of Antimicrobial Peptides for Escherichia coli and Staphylococcus aureus
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2025-03-01
err0
PREAI
errCai, Jianxiu; Yan, Jielu; Un, Chonwai; Wang, Yapeng; Campbell-Valois, Francois-Xavier; Siu, Shirley W. I.
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Identification of Anticancer Peptides from the Genome of Candida albicans: in Silico Screening, in Vitro and in Vivo Validations
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2024-07-15
err2
PREAI
errCheong, Hong-Hin; Zuo, Weimin; Chen, Jiarui; Un, Chon-Wai; Si, Yain-Whar; Wong, Koon Ho; Kwok, Hang Fai; Siu, Shirley W. I.
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errSave
A deep learning method for predicting the minimum inhibitory concentration of antimicrobial peptides against Escherichia coli using Multi-Branch-CNN and Attention
errMSYSTEMS
IF4.6
err2023-07-11
err13
errOAAI
errYan, Jielu; Zhang, Bob; Zhou, Mingliang; Campbell-Valois, Francois-Xavier; Siu, Shirley W. I.
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Application of ANN, XGBoost, and Other ML Methods to Forecast Air Quality in Macau
errSUSTAINABILITY
IF3.3
err2023-03-17
err17
errOAAI
errLei, Thomas M. T.; Ng, Stanley C. W.; Siu, Shirley W. I.
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errSave
Recent Progress in the Discovery and Design of Antimicrobial Peptides Using Traditional Machine Learning and Deep Learning
errANTIBIOTICS-BASEL
IF4.6
err2022-10-21
err54
errOAAI
errYan, Jielu; Cai, Jianxiu; Zhang, Bob; Wang, Yapeng; Wong, Derek F.; Siu, Shirley W., I
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errSave
Attentive recurrent adversarial domain adaptation with Top-k pseudo-labeling for time series classification
errAPPLIED INTELLIGENCE
IF3.5
err2022-10-06
err6
PREAI
errHe, Qi-Qiao; Siu, Shirley Weng In; Si, Yain-Whar
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errSave
Multi-Branch-CNN: Classification of ion channel interacting peptides using multi-branch convolutional neural network
errCOMPUTERS IN BIOLOGY AND MEDICINE
IF6.3
err2022-08-01
err15
PREAI
errYan, Jielu; Zhang, Bob; Zhou, Mingliang; Kwok, Hang Fai; Siu, Shirley W., I
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errSave
Instance-based deep transfer learning with attention for stock movement prediction
errAPPLIED INTELLIGENCE
IF3.5
err2022-07-12
err13
PREAI
errHe, Qi-Qiao; Siu, Shirley Weng In; Si, Yain-Whar
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A Neuropeptide Y/F-like Polypeptide Derived from the Transcriptome of Turbinaria peltata Suppresses LPS-Induced Astrocytic Inflammation
errJOURNAL OF NATURAL PRODUCTS
IF3.6
err2022-06-13
err7
PREAI
errChen, Qian; Liang, Zirong; Yue, Qian; Wang, Xiufen; Siu, Shirley Weng In; Hoi, Maggie Pui-Man; Lee, Simon Ming-Yuen
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Anti-epileptic Kunitz-like peptides discovered in the branching coral Acropora digitifera through transcriptomic analysis
errARCHIVES OF TOXICOLOGY
IF6.9
err2022-05-23
err3
PREAI
errChen, Hanbin; Siu, Shirley Weng In; Wong, Clarence Tsun Ting; Qiu, Jianwen; Cheung, Alex Kwok-Kuen; Lee, Simon Ming Yuen
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Novel Dihydropyrimidinone Derivatives as Potential P-Glycoprotein Modulators
errACS OMEGA
IF4.3
err2022-05-02
err3
errOAAI
errBijani, Sabera; Shaikh, Faraz; Mirza, Sheefa; Siu, Shirley Weng In; Jain, Nayan; Rawal, Rakesh; Richards, Nigel G. J.; Shah, Anamik; Radadiya, Ashish
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Research Directions

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Co-authors
Cooperation Journals
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David I. Stuart
H-index: 129 · Papers: 1.1K
C
Christopher J. Schofield
H-index: 112 · Papers: 1.3K
陈倩 cover
陈倩 (Qian Chen)
H-index: 104 · Papers: 1.3K
X
Xin‐She Yang
H-index: 96 · Papers: 712
P
Pavel Jungwirth
H-index: 85 · Papers: 430
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