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Felix Kokocinski

European Bioinformatics Institute

26H-index
42Paper Count
2.1WCitation Count
Published Papers 23
Publication Date
Evaluation of Nanopore Sequencing on Polar Bodies for Routine Pre-Implantation Genetic Testing for Aneuploidy
err2024-03-07
err1
errOAAI
errOberle, Anna; Hanzer, Franziska; Kokocinski, Felix; Ennemoser, Anna; Carli, Luca; Vaccari, Enrico; Hengstschlaeger, Markus; Feichtinger, Michael
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The Ensembl gene annotation system
err2016-06-23
err616
errOAAI
errAken, Bronwen L.; Ayling, Sarah; Barrell, Daniel; Clarke, Laura; Curwen, Valery; Fairley, Susan; Banet, Julio Fernandez; Billis, Konstantinos; Giron, Carlos Garcia; Hourlier, Thibaut; Howe, Kevin; Kahari, Andreas; Kokocinski, Felix; Martin, Fergal J.; Murphy, Daniel N.; Nag, Rishi; Ruffier, Magali; Schuster, Michael; Tang, Y. Amy; Vogel, Jan-Hinnerk; White, Simon; Zadissa, Amonida; Flicek, Paul; Searle, Stephen M. J.
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Altered Levels of Mitochondrial DNA Are Associated with Female Age, Aneuploidy, and Provide an Independent Measure of Embryonic Implantation Potential
err2015-06-03
err258
errOAAI
errFragouli, Elpida; Spath, Katharina; Alfarawati, Samer; Kaper, Fiona; Craig, Andrew; Michel, Claude-Edouard; Kokocinski, Felix; Cohen, Jacques; Munne, Santiago; Wells, Dagan
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Reply: Which blastocysts should be considered for genetic screening?
err2015-05-13
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errFiorentino, Francesco; Bono, Sara; Biricik, Anil; Nuccitelli, Andrea; Cotroneo, Ettore; Cottone, Giuliano; Kokocinski, Felix; Michel, Claude-Edouard; Minasi, Maria Giulia; Greco, Ermanno
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Application of next-generation sequencing technology for comprehensive aneuploidy screening of blastocysts in clinical preimplantation genetic screening cycles
err2014-10-21
err219
errOAAI
errFiorentino, Francesco; Bono, Sara; Biricik, Anil; Nuccitelli, Andrea; Cotroneo, Ettore; Cottone, Giuliano; Kokocinski, Felix; Michel, Claude-Edouard; Minasi, Maria Giulia; Greco, Ermanno
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Assessment of transcript reconstruction methods for RNA-seq
err2013-11-03
err566
errOAAI
errSteijger, Tamara; Abril, Josep F.; Engstrom, Par G.; Kokocinski, Felix; Hubbard, Tim J.; Guigo, Roderic; Harrow, Jennifer; Bertone, Paul
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GENCODE: The reference human genome annotation for The ENCODE Project
err2012-09-05
err3.9K
errOAAI
errHarrow, Jennifer; Frankish, Adam; Gonzalez, Jose M.; Tapanari, Electra; Diekhans, Mark; Kokocinski, Felix; Aken, Bronwen L.; Barrell, Daniel; Zadissa, Amonida; Searle, Stephen; Barnes, If; Bignell, Alexandra; Boychenko, Veronika; Hunt, Toby; Kay, Mike; Mukherjee, Gaurab; Rajan, Jeena; Despacio-Reyes, Gloria; Saunders, Gary; Steward, Charles; Harte, Rachel; Lin, Michael; Howald, Cedric; Tanzer, Andrea; Derrien, Thomas; Chrast, Jacqueline; Walters, Nathalie; Balasubramanian, Suganthi; Pei, Baikang; Tress, Michael; Manuel Rodriguez, Jose; Ezkurdia, Iakes; van Baren, Jeltje; Brent, Michael; Haussler, David; Kellis, Manolis; Valencia, Alfonso; Reymond, Alexandre; Gerstein, Mark; Guigo, Roderic; Hubbard, Tim J.
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Combining RT-PCR-seq and RNA-seq to catalog all genic elements encoded in the human genome
err2012-09-05
err47
errOAAI
errHowald, Cedric; Tanzer, Andrea; Chrast, Jacqueline; Kokocinski, Felix; Derrien, Thomas; Walters, Nathalie; Gonzalez, Jose M.; Frankish, Adam; Aken, Bronwen L.; Hourlier, Thibaut; Vogel, Jan-Hinnerk; White, Simon; Searle, Stephen; Harrow, Jennifer; Hubbard, Tim J.; Guigo, Roderic; Reymond, Alexandre
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The GENCODE exome: sequencing the complete human exome
err2011-03-02
err64
errOAAI
errCoffey, Alison J.; Kokocinski, Felix; Calafato, Maria S.; Scott, Carol E.; Palta, Priit; Drury, Eleanor; Joyce, Christopher J.; LeProust, Emily M.; Harrow, Jen; Hunt, Sarah; Lehesjoki, Anna-Elina; Turner, Daniel J.; Hubbard, Tim J.; Palotie, Aarno
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Ensembl 2011
err2010-11-02
err620
errOAAI
errFlicek, Paul; Amode, M. Ridwan; Barrell, Daniel; Beal, Kathryn; Brent, Simon; Chen, Yuan; Clapham, Peter; Coates, Guy; Fairley, Susan; Fitzgerald, Stephen; Gordon, Leo; Hendrix, Maurice; Hourlier, Thibaut; Johnson, Nathan; Kaehaeri, Andreas; Keefe, Damian; Keenan, Stephen; Kinsella, Rhoda; Kokocinski, Felix; Kulesha, Eugene; Larsson, Pontus; Longden, Ian; McLaren, William; Overduin, Bert; Pritchard, Bethan; Riat, Harpreet Singh; Rios, Daniel; Ritchie, Graham R. S.; Ruffier, Magali; Schuster, Michael; Sobral, Daniel; Spudich, Giulietta; Tang, Y. Amy; Trevanion, Stephen; Vandrovcova, Jana; Vilella, Albert J.; White, Simon; Wilder, Steven P.; Zadissa, Amonida; Zamora, Jorge; Aken, Bronwen L.; Birney, Ewan; Cunningham, Fiona; Dunham, Ian; Durbin, Richard; Fernandez-Suarez, Xose M.; Herrero, Javier; Hubbard, Tim J. P.; Parker, Anne; Proctor, Glenn; Vogel, Jan; Searle, Stephen M. J.
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AnnoTrack - a tracking system for genome annotation
err2010-10-05
err6
errOAAI
errKokocinski, Felix; Harrow, Jennifer; Hubbard, Tim
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The GENCODE human gene set
err2010-01-01
err4
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errSearle, S.; Frankish, A.; Bignell, A.; Aken, B.; Derrien, T.; Diekhans, M.; Harte, R.; Howald, C.; Kokocinski, F.; Lin, M.; Tress, M.; Van Baren, M.; Barnes, I.; Hunt, T.; Carvalho-Silva, D.; Davidson, C.; Donaldson, S.; Gilbert, J.; Kay, M.; Lloyd, D.; Loveland, J.; Mudge, J.; Snow, C.; Vamathevan, J.; Wilming, L.; Brent, M.; Gerstein, M.; Guigo, R.; Kellis, M.; Reymond, A.; Zadissa, A.; Valencia, A.; Harrow, J.; Hubbard, T.
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Ensembl's 10th year
err2009-11-11
err209
errOAAI
errFlicek, Paul; Aken, Bronwen L.; Ballester, Benoit; Beal, Kathryn; Bragin, Eugene; Brent, Simon; Chen, Yuan; Clapham, Peter; Coates, Guy; Fairley, Susan; Fitzgerald, Stephen; Fernandez-Banet, Julio; Gordon, Leo; Graef, Stefan; Haider, Syed; Hammond, Martin; Howe, Kerstin; Jenkinson, Andrew; Johnson, Nathan; Kaehaeri, Andreas; Keefe, Damian; Keenan, Stephen; Kinsella, Rhoda; Kokocinski, Felix; Koscielny, Gautier; Kulesha, Eugene; Lawson, Daniel; Longden, Ian; Massingham, Tim; McLaren, William; Megy, Karine; Overduin, Bert; Pritchard, Bethan; Rios, Daniel; Ruffier, Magali; Schuster, Michael; Slater, Guy; Smedley, Damian; Spudich, Giulietta; Tang, Y. Amy; Trevanion, Stephen; Vilella, Albert; Vogel, Jan; White, Simon; Wilder, Steven P.; Zadissa, Amonida; Birney, Ewan; Cunningham, Fiona; Dunham, Ian; Durbin, Richard; Fernandez-Suarez, Xose M.; Herrero, Javier; Hubbard, Tim J. P.; Parker, Anne; Proctor, Glenn; Smith, James; Searle, Stephen M. J.
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Ensembl 2009
err2009-01-01
err735
errOAAI
errHubbard, T. J. P.; Aken, B. L.; Ayling, S.; Ballester, B.; Beal, K.; Bragin, E.; Brent, S.; Chen, Y.; Clapham, P.; Clarke, L.; Coates, G.; Fairley, S.; Fitzgerald, S.; Fernandez-Banet, J.; Gordon, L.; Graf, S.; Haider, S.; Hammond, M.; Holland, R.; Howe, K.; Jenkinson, A.; Johnson, N.; Kahari, A.; Keefe, D.; Keenan, S.; Kinsella, R.; Kokocinski, F.; Kulesha, E.; Lawson, D.; Longden, I.; Megy, K.; Meidl, P.; Overduin, B.; Parker, A.; Pritchard, B.; Rios, D.; Schuster, M.; Slater, G.; Smedley, D.; Spooner, W.; Spudich, G.; Trevanion, S.; Vilella, A.; Vogel, J.; White, S.; Wilder, S.; Zadissa, A.; Birney, E.; Cunningham, F.; Curwen, V.; Durbin, R.; Fernandez-Suarez, X. M.; Herrero, J.; Kasprzyk, A.; Proctor, G.; Smith, J.; Searle, S.; Flicek, P.
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Ensembl 2007
err2007-01-03
err720
errOAAI
errHubbard, T. J. P.; Aken, B. L.; Beal, K.; Ballester, B.; Caccamo, M.; Chen, Y.; Clarke, L.; Coates, G.; Cunningham, F.; Cutts, T.; Down, T.; Dyer, S. C.; Fitzgerald, S.; Fernandez-Banet, J.; Graf, S.; Haider, S.; Hammond, M.; Herrero, J.; Holland, R.; Howe, K.; Howe, K.; Johnson, N.; Kahari, A.; Keefe, D.; Kokocinski, F.; Kulesha, E.; Lawson, D.; Longden, I.; Melsopp, C.; Megy, K.; Meidl, P.; Overduin, B.; Parker, A.; Prlic, A.; Rice, S.; Rios, D.; Schuster, M.; Sealy, I.; Severin, J.; Slater, G.; Smedley, D.; Spudich, G.; Trevanion, S.; Vilella, A.; Vogel, J.; White, S.; Wood, M.; Cox, T.; Curwen, V.; Durbin, R.; Fernandez-Suarez, X. M.; Flicek, P.; Kasprzyk, A.; Proctor, G.; Searle, S.; Smith, J.; Ureta-Vidal, A.; Birney, E.
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Cation of novel tumour-associated genes differentially expressed in the process of squamous cell cancer development
err2005-10-17
err77
PREAI
errHummerich, L; Müller, R; Hess, J; Kokocinski, F; Hahn, M; Fürstenberger, G; Mauch, C; Lichter, P; Angel, P
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Distinct gene expression patterns associated with FLT3- and NRAS-activating mutations in acute myeloid leukemia with normal karyotype
err2005-01-10
err69
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errNeben, K; Schnittger, S; Brors, B; Tews, B; Kokocinski, F; Haferlach, T; Müller, J; Hahn, M; Hiddemann, W; Eils, R; Lichter, P; Schoch, C
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Identification of novel AP-1 target genes in fibroblasts regulated during cutaneous wound healing
err2004-07-26
err60
PREAI
errFlorin, L; Hummerich, L; Dittrich, BT; Kokocinski, F; Wrobel, G; Gack, S; Schorpp-Kistner, M; Werner, S; Hahn, M; Lichter, P; Szabowski, A; Angel, P
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