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DNA Methylation Signature of Synchronous Endometrioid Endometrial and Ovarian Carcinomas Lin, Lawrence Hsu; Allison, Douglas H. R.; Turashvili, Gulisa; Vasudevaraja, Varshini; Tran, Ivy; Serrano, Jonathan; Weigelt, Britta; Ladanyi, Marc; Abu-Rustum, Nadeem R.; Snuderl, Matija; Chiang, Sarah Share Save
DNA Methylation Identifies Epigenetic Subtypes of Triple-Negative Breast Cancers With Distinct Clinicopathologic and Molecular Features Lin, Lawrence Hsu; Tran, Ivy; Yang, Yiying; Shen, Guomiao; Miah, Pabel; Cotzia, Paolo; Roses, Daniel; Schnabel, Freya; Darvishian, Farbod; Snuderl, Matija Share Save
Impact of Rare and Multiple Concurrent Gene Fusions on Diagnostic DNA Methylation Classifier in Brain Tumors Galbraith, Kristyn; Serrano, Jonathan; Shen, Guomiao; Tran, Ivy; Slocum, Cheyanne C.; Ketchum, Courtney; Abdullaev, Zied; Turakulov, Rust; Bale, Tejus; Ladanyi, Marc; Sukhadia, Purvil; Zaidinski, Michael; Mullaney, Kerry; Dinapoli, Sara; Liechty, Benjamin L.; Barbaro, Marissa; Allen, Jeffrey C.; Gardner, Sharon L.; Wisoff, Jeffrey; Harter, David; Hidalgo, Eveline Teresa; Golfinos, John G.; Orringer, Daniel A.; Aldape, Kenneth; Benhamida, Jamal; Wrzeszczynski, Kazimierz O.; Jour, George; Snuderl, Matija Share Save
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Clinical utility of whole-genome DNA methylation profiling as a primary molecular diagnostic assay for central nervous system tumors-A prospective study and guidelines for clinical testing Galbraith, Kristyn; Vasudevaraja, Varshini; Serrano, Jonathan; Shen, Guomiao; Tran, Ivy; Abdallat, Nancy; Wen, Mandisa; Patel, Seema; Movahed-Ezazi, Misha; Faustin, Arline; Spino-Keeton, Marissa; Roberts, Leah Geiser; Maloku, Ekrem; Drexler, Steven A.; Liechty, Benjamin L.; Pisapia, David; Krasnozhen-Ratush, Olga; Rosenblum, Marc; Shroff, Seema; Boue, Daniel R.; Davidson, Christian; Mao, Qinwen; Suchi, Mariko; North, Paula; Hopp, Amanda; Segura, Annette; Jarzembowski, Jason A.; Parsons, Lauren; Johnson, Mahlon D.; Mobley, Bret; Samore, Wesley; McGuone, Declan; Gopal, Pallavi P.; Canoll, Peter D.; Horbinski, Craig; Fullmer, Joseph M.; Farooqui, Midhat S.; Gokden, Murat; Wadhwani, Nitin R.; Richardson, Timothy E.; Umphlett, Melissa; Tsankova, Nadejda M.; DeWitt, John C.; Sen, Chandra; Placantonakis, Dimitris G.; Pacione, Donato; Wisoff, Jeffrey H.; Teresa Hidalgo, Eveline; Harter, David; William, Christopher M.; Cordova, Christine; Kurz, Sylvia C.; Barbaro, Marissa; Orringer, Daniel A.; Karajannis, Matthias A.; Sulman, Erik P.; Gardner, Sharon L.; Zagzag, David; Tsirigos, Aristotelis; Allen, Jeffrey C.; Golfinos, John G.; Snuderl, Matija Share Save
The prognostic impact of subclonal IDH1 mutation in grade 2-4 astrocytomas Vij, Meenakshi; Yokoda, Raquel T.; Rashidipour, Omid; Tran, Ivy; Vasudevaraja, Varshini; Snuderl, Matija; Yong, Raymund L.; Cobb, William S.; Umphlett, Melissa; Walker, Jamie M.; Tsankova, Nadejda M.; Richardson, Timothy E. Share Save
Whole genome cell-free tumor DNA mutational signatures from blood for early detection of recurrence of low stage lung adenocarcinoma Tran, Ivy; Vargas, Alejandro; Wilkins, Reid; Pizzillo, Isabella; Tokoro, Kenneth; Afterman, Danielle; Lauterman, Tomer; Kuzman, Maja; Gonzalez, Santiago; Glavas, Dunja; Smadbeck, James; Maloney, Dillon; Levatic, Jurica; Phillips, Samuel; Deochand, Sunil; Yahalom, Michael; Ptashkin, Ryan; Tavassoly, Iman; Donenhirsh, Zohar; White, Eric; Kandasamy, Ravi; Alon, Ury; Polak, Paz; Oklander, Boris; Zviran, Asaf; Snuderl, Matija; Pass, Harvey I. Share Save
Atypical neurofibromas reveal distinct epigenetic features with proximity to benign peripheral nerve sheath tumor entities Kresbach, Catena; Dottermusch, Matthias; Eckhardt, Alicia; Ristow, Inka; Paplomatas, Petros; Altendorf, Lea; Wefers, Annika K.; Bockmayr, Michael; Belakhoua, Sarra; Tran, Ivy; Pohl, Lara; Neyazi, Sina; Bode, Helena; Farschtschi, Said; Well, Lennart; Friedrich, Reinhard E.; Reuss, David; Snuderl, Matija; Hagel, Christian; Mautner, Victor-Felix; Schueller, Ulrich Share Save
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Clinicopathologic and molecular spectrum of testicular sex cord-stromal tumors not amenable to specific histopathologic subclassification Siegmund, Stephanie E.; Sholl, Lynette M.; Tsai, Harrison K.; Yang, Yiying; Vasudevaraja, Varshini; Tran, Ivy; Snuderl, Matija; Fletcher, Christopher D. M.; Cornejo, Kristine M.; Idrees, Muhammad T.; Al-Obaidy, Khaleel, I; Collins, Katrina; Gordetsky, Jennifer B.; Wobker, Sara E.; Hirsch, Michelle S.; Trpkov, Kiril; Yilmaz, Asli; Anderson, William J.; Quiroga-Garza, Gabriela; Magi-Galluzzi, Cristina; Canete-Portillo, Sofia; Acosta, Andres M. Share Save
Molecular correlates of male germ cell tumors with overgrowth of components resembling somatic malignancies Wyvekens, Nicolas; Sholl, Lynette M.; Yang, Yiying; Tran, Ivy; Vasudevaraja, Varshini; Dickson, Brendan C.; Al-Obaidy, Khaleel, I; Baniak, Nicholas; Collins, Katrina; Gordetsky, Jennifer B.; Idrees, Muhammad T.; Kao, Chia-Sui; Maclean, Fiona; Matoso, Andres; Ulbright, Thomas M.; Wobker, Sara E.; Fletcher, Christopher D. M.; Hirsch, Michelle S.; Hornick, Jason L.; Snuderl, Matija; Acosta, Andres M. Share Save
Association of hyperglycemia and molecular subclass on survival in IDH-wildtype glioblastoma Liu, Elisa K.; Vasudevaraja, Varshini; Sviderskiy, Vladislav O.; Feng, Yang; Tran, Ivy; Serrano, Jonathan; Cordova, Christine; Kurz, Sylvia C.; Golfinos, John G.; Sulman, Erik P.; Orringer, Daniel A.; Placantonakis, Dimitris; Possemato, Richard; Snuderl, Matija Share Save
Epigenetic and genomic profiling of chordoid meningioma: implications for clinical management Daoud, Elena, V; Zhu, Kelsey; Mickey, Bruce; Mohamed, Hussein; Wen, Mandisa; Delorenzo, Michael; Tran, Ivy; Serrano, Jonathan; Hatanpaa, Kimmo J.; Raisanen, Jack M.; Snuderl, Matija; Cai, Chunyu Share Save
Comprehensive profiling of myxopapillary ependymomas identifies a distinct molecular subtype with relapsing disease Bockmayr, Michael; Harnisch, Kim; Pohl, Lara C.; Schweizer, Leonille; Mohme, Theresa; Korner, Meik; Alawi, Malik; Suwala, Abigail K.; Dorostkar, Mario M.; Monoranu, Camelia M.; Hasselblatt, Martin; Wefers, Annika K.; Capper, David; Hench, Juergen; Frank, Stephan; Richardson, Timothy E.; Tran, Ivy; Liu, Elisa; Snuderl, Matija; Engertsberger, Lara; Benesch, Martin; von Deimling, Andreas; Obrecht, Denise; Mynarek, Martin; Rutkowski, Stefan; Glatzel, Markus; Neumann, Julia E.; Schueller, Ulrich Share Save
Spatial progression and molecular heterogeneity of IDH-mutant glioblastoma determined by DNA methylation-based mapping Lyon, James F.; Vasudevaraja, Varshini; Mirchia, Kanish; Walker, Jamie M.; Corona, Robert J.; Chin, Lawrence S.; Tran, Ivy; Snuderl, Matija; Richardson, Timothy E.; Viapiano, Mariano S. Share Save
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Fibroblastic niches prime T cell alloimmunity through Delta-like Notch ligands Chung, Jooho; Ebens, Christen L.; Perkey, Eric; Radojcic, Vedran; Koch, Ute; Scarpellino, Leonardo; Tong, Alexander; Allen, Frederick; Wood, Sherri; Feng, Jiane; Friedman, Ann; Granadier, David; Tran, Ivy T.; Chai, Qian; Onder, Lucas; Yan, Minhong; Reddy, Pavan; Blazar, Bruce R.; Huang, Alex Y.; Brennan, Todd V.; Bishop, D. Keith; Ludewig, Burkhard; Siebel, Christian W.; Radtke, Freddy; Luther, Sanjiv A.; Maillard, Ivan Share Save
T Cell-Specific Notch Inhibition Blocks Graft-versus-Host Disease by Inducing a Hyporesponsive Program in Alloreactive CD4+ and CD8+ T Cells Sandy, Ashley R.; Chung, Jooho; Toubai, Tomomi; Shan, Gloria T.; Tran, Ivy T.; Friedman, Ann; Blackwell, Timothy S.; Reddy, Pavan; King, Philip D.; Maillard, Ivan Share Save
Blockade of individual Notch ligands and receptors controls graft-versus-host disease Tran, Ivy T.; Sandy, Ashley R.; Carulli, Alexis J.; Ebens, Christen; Chung, Jooho; Shan, Gloria T.; Radojcic, Vedran; Friedman, Ann; Gridley, Thomas; Shelton, Amy; Reddy, Pavan; Samuelson, Linda C.; Yan, Minhong; Siebel, Christian W.; Maillard, Ivan Share Save
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