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K

Ken A. Dill

Stony Brook University

105H-index
581Paper Count
4.3WCitation Count
Published Papers 182
Publication Date
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A principled basis for nonequilibrium network flows
errNature Communications
IF15.7
err2026-04-08
err0
errOAAI
errYing-Jen Yang; Ken A. Dill
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errSave
Modeling Protein–Protein and Protein–Ligand Interactions by the ClusPro Team in CASP16
errProteins: Structure, Function, and Bioinformatics
IF0
err2025-10-20
err0
errOAAI
errRyota Ashizawa; Sergei Kotelnikov; Omeir Khan; Stan Xiaogang Li; Ernest Glukhov; Xin Cao; Maria Lazou; Ayse Bekar-Cesaretli; Derara Hailegeorgis; Veranika Averkava; Yimin Zhu; George Jones; Hao Yu; Dmytro Kalitin; Darya Stepanenko; Kushal Koirala; Taras Patsahan; Dmitri Beglov; Mark Lukin; Diane Joseph-McCarthy; Carlos Simmerling; Alexander Tropsha; Evangelos Coutsias; Ken A. Dill; Dzmitry Padhorny; Sandor Vajda; Dima Kozakov
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Brain aging shows nonlinear transitions, suggesting a midlife critical window for metabolic intervention
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2025-03-03
err0
errOAAI
errAntal, Botond B.; van Nieuwenhuizen, Helena; Chesebro, Anthony G.; Strey, Helmut H.; Jones, David T.; Clarke, Kieran; Weistuch, Corey; Ratai, Eva-Maria; Dill, Ken A.; Mujica-Parodi, Lilianne R.
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errSave
MELD in Action: Harnessing Data to Accelerate Molecular Dynamics
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2025-02-02
err0
PREAI
errGaza, Jokent; Brini, Emiliano; Maccallum, Justin L.; Dill, Ken A.; Perez, Alberto
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errSave
Normal tissue transcriptional signatures for tumor-type-agnostic phenotype prediction
errSCIENTIFIC REPORTS
IF3.9
err2024-11-08
err0
errOAAI
errWeistuch, Corey; Murgas, Kevin A.; Zhu, Jiening; Norton, Larry; Dill, Ken A.; Tannenbaum, Allen R.; Deasy, Joseph O.
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errSave
Brain signaling becomes less integrated and more segregated with age
errNETWORK NEUROSCIENCE
IF3.1
err2024-10-01
err1
errOAAI
errRazban, Rostam M.; Antal, Botond B.; Dill, Ken A.; Mujica-Parodi, Lilianne R.
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errSave
MHC-Fine: Fine-tuned AlphaFold for precise MHC-peptide complex prediction
errBIOPHYSICAL JOURNAL
IF3.1
err2024-09-01
err2
errOAAI
errGlukhov, Ernest; Kalitin, Dmytro; Stepanenko, Darya; Zhu, Yimin; Nguyen, Thu; Jones, George; Patsahan, Taras; Simmerling, Carlos; Mitchell, Julie C.; Vajda, Sandor; Dill, Ken A.; Padhorny, Dzmitry; Kozakov, Dima
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Transcriptional drift in aging cells: A global decontroller
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2024-07-16
err0
errOAAI
errMatsuzaki, Tyler; Weistuch, Corey; de Graff, Adam; Dill, Ken A.; Balazsi, Gabor
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errSave
Antibody association in solution: cluster distributions and mechanisms
errMABS
IF7.3
err2024-04-26
err0
errOAAI
errBrudar, Sandi; Breydo, Leonid; Chung, Elisha; Dill, Ken A.; Ehterami, Nasim; Phadnis, Ketan; Senapati, Samir; Shameem, Mohammed; Tang, Xiaolin; Tayyab, Muhammmad; Hribar-Lee, Barbara
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errSave
Computational Procedure for Predicting Excipient Effects on Protein-Protein Affinities
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2024-01-31
err1
errOAAI
errDignon, Gregory L.; Dill, Ken A.
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errSave
Computing Free Energies of Fold-Switching Proteins Using MELD x MD
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2023-09-19
err4
PREAI
errParui, Sridip; Brini, Emiliano; Dill, Ken A.
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errSave
MELD-Bracket Ranks Binding Affinities of Diverse Sets of Ligands
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2023-04-24
err2
PREAI
errParui, Sridip; Robertson, James C.; Somani, Sandeep; Tresadern, Gary; Liu, Cong; Dill, Ken A.
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errSave
Early path dominance as a principle for neurodevelopment
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2023-04-13
err4
errOAAI
errRazban, Rostam M.; Pachter, Jonathan Asher; Dill, Ken A.; Mujica-Parodi, Lilianne R.
errShare
errSave
A universal atlas of cellular and oncogenic phenotypes
errCANCER RESEARCH
IF16.6
err2023-04-04
err0
PREAI
errWeistuch, Corey; Murgas, Kevin; Dill, Ken; Norton, Larry; Deasy, Joseph; Tannenbaum, Allen
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errSave
Darwinian evolution as a dynamical principle
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2023-03-07
err5
errOAAI
errKocher, Charles D.; Dill, Ken A.
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errSave
Review of the application of Kirchhoff's Laws of series and parallel flows to pharmacology: Defining organ clearance
errPHARMACOLOGY & THERAPEUTICS
IF12.5
err2022-11-01
err11
errOAAI
errPachter, Jonathan Asher; Dill, Ken A.; Sodhi, Jasleen K.; Benet, Leslie Z.
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errSave
The Bootstrap Model of Prebiotic Networks of Proteins and Nucleic Acids
errLIFE-BASEL
IF3.4
err2022-05-12
err1
errOAAI
errFarquharson, Thomas; Agozzino, Luca; Dill, Ken
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errSave
Accelerating Protein Folding Molecular Dynamics Using Inter-Residue Distances from Machine Learning Servers
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2022-02-08
err14
errOAAI
errNassar, Roy; Brini, Emiliano; Parui, Sridip; Liu, Cong; Dignon, Gregory L.; Dill, Ken A.
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errSave
Accelerating Molecular Dynamics Enrichments of High-Affinity Ligands for Proteins
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2021-12-08
err3
errOAAI
errLiu, Cong; Brini, Emiliano; Dill, Ken A.
errShare
errSave
CryoFold: Determining protein structures and data-guided ensembles from cryo-EM density maps
errMATTER
IF17.5
err2021-10-01
err29
errOAAI
errShekhar, Mrinal; Terashi, Genki; Gupta, Chitrak; Sarkar, Daipayan; Debussche, Gaspard; Sisco, Nicholas J.; Nguyen, Jonathan; Mondal, Arup; Vant, John; Fromme, Petra; Van Horn, Wade D.; Tajkhorshid, Emad; Kihara, Daisuke; Dill, Ken; Perez, Alberto; Singharoy, Abhishek
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Research Directions

No research directions
Co-authors
Cooperation Journals
L
Larry Norton
H-index: 133 · Papers: 1.0K
V
Vijay S. Pande
H-index: 110 · Papers: 494
W
Wah Chiu
H-index: 105 · Papers: 819
L
Lisa M. Coussens
H-index: 100 · Papers: 628
P
Paul D. Adams
H-index: 99 · Papers: 578
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