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Paul D. Adams

lawrence berkeley national laboratory

99H-index
578Paper Count
13.5WCitation Count
Published Papers 178
Publication Date
An additional water is introduced into the manganese cluster during the formation of the S3 state of photosystem II
err2026-08-22
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errOAAI
errAsmit Bhowmick; Miao Zhang; Philipp S. Simon; Hiroki Makita; Isabela I. Nangca; Erzsi Szilagyi; Moritz Kretzschmar; Margaret D. Doyle; Natalie M. Minnetian; Rana Hussein; Olli Hart; Kuntal Chatterjee; A. Orkun Aydin; Dmitry Shevela; Mun Hon Cheah; Nicholas Croy; Petko Chernev; Thomas Fransson; Vandana Tiwari; Humberto Sanchez; Pamela Schleissner; Randy Lemons; Greg Gate; Meredith Henstridge; James M. Glownia; Frédéric Poitevin; Daniel J. Rosenberg; Sebastian Dehe; Leland B. Gee; Kensuke Tono; Shigeki Owada; Roland Oggenfuss; Dmitry Ozerov; Mathias Sander; Roman Mankowsky; Henrik T. Lemke; Iris D. Young; James M. Holton; David W. Mittan-Moreau; Daniel W. Paley; Pavel V. Afonine; Nigel W. Moriarty; Paul D. Adams; Fikret Mamedov; Holger Dobbek; Athina Zouni; Roberto Alonso-Mori; Uwe Bergmann; Aaron S. Brewster; Nicholas K. Sauter; Johannes Messinger; Jan F. Kern; Vittal K. Yachandra; Junko Yano
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Diversity-driven biochemical survey reveals widespread dimerization throughout the rubisco superfamily
err2026-06-03
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errOAAI
errAlexander J. Kehl; Leah Taylor-Kearney; Alexander L. Jaffe; Jose Henrique Pereira; Jennifer Lee; Michal Hammel; Lucas M. Waldburger; Caroline Yeow; Luis Valentin-Alvarado; Paul D. Adams; Jillian F. Banfield; Justin B. Siegel; Noam Prywes; Patrick M. Shih
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Author Correction: A polyketide-based biosynthetic platform for diols, amino alcohols and hydroxy acids
err2026-01-29
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errOAAI
errQingyun Dan; Yan Chiu; Namil Lee; Jose Henrique Pereira; Behzad Rad; Xixi Zhao; Kai Deng; Yiou Rong; Chunjun Zhan; Yan Chen; Seokjung Cheong; Chenyi Li; Jennifer W. Gin; Andria Rodrigues; Trent R. Northen; Tyler W. H. Backman; Edward E. K. Baidoo; Christopher J. Petzold; Paul D. Adams; Jay D. Keasling
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Automation and machine learning drive rapid optimization of isoprenol production in Pseudomonas putida
err2025-12-13
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errDavid N. Carruthers; Patrick C. Kinnunen; Yuerong Li; Yan Chen; Jennifer W. Gin; Ian S. Yunus; William R. Galliard; Stephen Tan; Tijana Radivojevic; Paul D. Adams; Anup K. Singh; Jess Sustarich; Christopher J. Petzold; Aindrila Mukhopadhyay; Hector Garcia Martin; Taek Soon Lee
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A highly active Burkholderia polyketoacyl-CoA thiolase for production of triacetic acid lactone
err2025-12-09
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errOAAI
errZilong Wang; Seokjung Cheong; Jose Henrique Pereira; Weixi Hu; Yifan Guo; Andy DeGiovanni; Guangxu Lan; Jinho Kim; Robert W. Haushalter; Taek Soon Lee; Paul D. Adams; Jay D. Keasling
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One-Step Purification of a Bioactive PAK1-Derived Peptide
err2025-11-19
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errDjamali Muhoza; Emily P. Esquivel; Stacy R. Hunter; Patience S. Okoto; Thallapuranam K.S. Kumar; Paul D. Adams
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Predictive CRISPR-mediated gene downregulation for enhanced production of sustainable aviation fuel precursor in Pseudomonas putida
err2025-11-06
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errIan S. Yunus; David N. Carruthers; Yan Chen; Jennifer W. Gin; Edward E.K. Baidoo; Christopher J. Petzold; Hector G. Martin; Paul D. Adams; Aindrila Mukhopadhyay; Taek Soon Lee
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Enzymology and Structural Basis of Glycosyltransferases Involved in Saponin C28 Carboxylic Acid O-d-Fucosylation
errJACS AU
IF8.7
err2025-11-01
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PREAI
errHudson, Graham A.; Pereira, Jose H.; Winegar, Peter H.; Fitzgerald, David M.; Degiovanni, Andy; Chen, Xiaoyue; Zhao, Xixi; Astolfi, Maria C. T.; Reed, James; El-Demerdash, Amr; Rejzek, Martin; Kikuchi, Shingo; Osbourn, Anne; Scheller, Henrik V.; Adams, Paul D.; Keasling, Jay D.
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Biosensor-driven strain engineering reveals key cellular processes for maximizing isoprenol production in Pseudomonas putida
err2025-10-24
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PREAI
errJavier Menasalvas; Shawn Kulakowski; Yan Chen; Jennifer W. Gin; Emine Akyuz Turumtay; Nawa Raj Baral; Morgan A. Apolonio; Alex Rivier; Ian S. Yunus; Megan E. Garber; Corinne D. Scown; Paul D. Adams; Taek Soon Lee; Ian K. Blaby; Edward E. K. Baidoo; Christopher J. Petzold; Thomas Eng; Aindrila Mukhopadhyay
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AQuaRef: machine learning accelerated quantum refinement of protein structures
err2025-10-17
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errRoman Zubatyuk; Malgorzata Biczysko; Kavindri Ranasinghe; Nigel W. Moriarty; Hatice Gokcan; Holger Kruse; Billy K. Poon; Paul D. Adams; Mark P. Waller; Adrian E. Roitberg; Olexandr Isayev; Pavel V. Afonine
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The crystal structure of Grindelia robusta 7,13-copalyl diphosphate synthase reveals active site features controlling catalytic specificity
err2024-12-01
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errOAAI
errCowie, Anna E.; Pereira, Jose H.; DeGiovanni, Andy; McAndrew, Ryan P.; Palayam, Malathy; Peek, Jedidiah O.; Muchlinski, Andrew J.; Yoshikuni, Yasuo; Shabek, Nitzan; Adams, Paul D.; Zerbe, Philipp
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EcoFAB 3.0: a sterile system for studying sorghum that replicates previous field and greenhouse observations
err2024-10-07
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errOAAI
errGupta, Kshitiz; Tian, Yang; Eudes, Aymerick; Scheller, Henrik V.; Singh, Anup K.; Adams, Paul D.; Andeer, Peter F.; Northen, Trent R.
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Characterization of lignin-degrading enzyme PmdC, which catalyzes a key step in the synthesis of polymer precursor 2-pyrone-4,6-dicarboxylic acid
err2024-10-01
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errOAAI
errRodrigues, Andria V.; Moriarty, Nigel W.; Kakumanu, Ramu; DeGiovanni, Andy; Pereira, Jose Henrique; Gin, Jennifer W.; Chen, Yan; Baidoo, Edward E. K.; Petzold, Christopher J.; Adams, Paul D.
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Structural and biochemical basis for regiospecificity of the flavonoid glycosyltransferase UGT95A1
err2024-09-01
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errOAAI
errSirirungruang, Sasilada; Blay, Vincent; Scott, Yasmine F.; Pereira, Jose H.; Hammel, Michal; Barnum, Collin R.; Adams, Paul D.; Shih, Patrick M.
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Systematic engineering for production of anti-aging sunscreen compound in Pseudomonas putida
err2024-07-01
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errOAAI
errYunus, Ian S.; Hudson, Graham A.; Chen, Yan; Gin, Jennifer W.; Kim, Joonhoon; Baidoo, Edward E. K.; Petzold, Christopher J.; Adams, Paul D.; Simmons, Blake A.; Mukhopadhyay, Aindrila; Keasling, Jay D.; Lee, Taek Soon
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Putative rhamnogalacturonan-II glycosyltransferase identified through callus gene editing which bypasses embryo lethality
err2024-05-13
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errZhang, Yuan; Sharma, Deepak; Liang, Yan; Downs, Nick; Dolman, Fleur; Thorne, Kristen; Black, Ian M.; Pereira, Jose Henrique; Adams, Paul; Scheller, Henrik, V; O'Neill, Malcolm; Urbanowicz, Breeanna; Mortimer, Jenny C.
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Purification of Rubredoxin tagged Recombinant Proteins using the Three Phase Partitioning technique
err2024-03-01
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errOAAI
errShahzad, Kaynat; Al-Ameer, Musaab; Okoto, Patience; Adams, Paul; Thallapuranam, Suresh
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AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination
err2023-11-30
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errOAAI
errTerwilliger, Thomas C.; Liebschner, Dorothee; Croll, Tristan I.; Williams, Christopher J.; McCoy, Airlie J.; Poon, Billy K.; Afonine, Pavel V.; Oeffner, Robert D.; Richardson, Jane S.; Read, Randy J.; Adams, Paul D.
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Simultaneous carbon catabolite repression governs sugar and aromatic co-utilization in Pseudomonas putida M2
err2023-10-31
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errOAAI
errShrestha, Shilva; Awasthi, Deepika; Chen, Yan; Gin, Jennifer; Petzold, Christopher J.; Adams, Paul D.; Simmons, Blake A.; Singer, Steven W.
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Expanding Extender Substrate Selection for Unnatural Polyketide Biosynthesis by Acyltransferase Domain Exchange within a Modular Polyketide Synthase
err2023-04-14
err11
errOAAI
errEnglund, Elias; Schmidt, Matthias; Nava, Alberto A.; Lechner, Anna; Deng, Kai; Jocic, Renee; Lin, Yingxin; Roberts, Jacob; Benites, Veronica T.; Kakumanu, Ramu; Gin, Jennifer W.; Chen, Yan; Liu, Yuzhong; Petzold, Christopher J.; Baidoo, Edward E. K.; Northen, Trent R.; Adams, Paul D.; Katz, Leonard; Yuzawa, Satoshi; Keasling, Jay D.
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