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Axel Visel

lawrence berkeley national laboratory

76H-index
253Paper Count
3.9WCitation Count
Published Papers 99
Publication Date
Non-coding structural variants disrupt FOXG1 transcriptional regulation in early neurodevelopment
err2026-06-03
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errLisa Hamerlinck; Eva D’haene; Michael B. Vaughan; Nore Van Loon; María del Rocío Pérez Baca; Sebastian Leimbacher; Michael Kosicki; Lara Colombo; Lukas Genbrugge; Lies Vantomme; Esperanza Daal; Luiza Lorena Pires Ramos; Daniela Mircheva Avdjieva-Tzavella; Himanshu Goel; Koen Devriendt; Albena Jordanova; Annelies Dheedene; Axel Visel; Björn Menten; Bert Callewaert; Sarah Vergult
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Cis-regulatory evolution shapes facial diversity in birds and mammals
err2026-05-06
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errStella Kyomen; Louk W. G. Seton; Laura E. Cook; Elio Escamilla-Vega; Andrea P. Murillo-Rincón; Alexander Jacobsen; Amor Damatac; Carsten Fortmann-Grote; Janina Fuss; Axel Visel; Markéta Kaucká
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An expanded registry of candidate cis-regulatory elements
errNature
IF48.5
err2026-01-07
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errJill E. Moore; Henry E. Pratt; Kaili Fan; Nishigandha Phalke; Jonathan Fisher; Shaimae I. Elhajjajy; Gregory Andrews; Mingshi Gao; Nicole Shedd; Yu Fu; Matthew C. Lacadie; Jair Meza; Mansi Khandpekar; Mohit Ganna; Eva Choudhury; Ross Swofford; Huong Phan; Christian C. Ramirez; Maxwell Campbell; Mary Likhite; Nina P. Farrell; Annika K. Weimer; Anusri Pampari; Vivekanandan Ramalingam; Fairlie Reese; Beatrice Borsari; Xuezhu Yu; Eve Wattenberg; Marina Ruiz-Romero; Milad Razavi-Mohseni; Jinrui Xu; Timur Galeev; Andres Colubri; Michael A. Beer; Roderic Guigó; Mark B. Gerstein; Jesse M. Engreitz; Mats Ljungman; Timothy E. Reddy; Michael P. Snyder; Charles B. Epstein; Elizabeth Gaskell; Bradley E. Bernstein; Diane E. Dickel; Axel Visel; Len A. Pennacchio; Ali Mortazavi; Anshul Kundaje; Zhiping Weng
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Uncovering hidden enhancers through unbiased in vivo testing
err2025-08-08
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errBrandon J. Mannion; Stella Tran; Ingrid Plajzer-Frick; Catherine S. Novak; Veena Afzal; Jennifer A. Akiyama; Ismael Sospedra-Arrufat; Sarah Barton; Erik Beckman; Tyler H. Garvin; Patrick Godfrey; Janeth Godoy; Riana D. Hunter; Momoe Kato; Michael Kosicki; Anne N. Kronshage; Elizabeth A. Lee; Eman M. Meky; Quan T. Pham; Kianna von Maydell; Yiwen Zhu; Javier Lopez-Rios; Diane E. Dickel; Marco Osterwalder; Axel Visel; Len A. Pennacchio
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Identification of functional non-coding variants associated with orofacial cleft
err2025-07-16
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errPriyanka Kumari; Ryan Z. Friedman; Sarah W. Curtis; Lira Pi; Kitt Paraiso; Axel Visel; Lindsey Rhea; Martine Dunnwald; Anjali P. Patni; Daniel Mar; Karol Bomsztyk; Julie Mathieu; Hannele Ruohola-Baker; Elizabeth J. Leslie-Clarkson; Michael A. White; Barak A. Cohen; Robert A. Cornell
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Range extender mediates long-distance enhancer activity
errNature
IF48.5
err2025-07-02
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errGrace Bower; Ethan W. Hollingsworth; Sandra H. Jacinto; Joshua A. Alcantara; Benjamin Clock; Kaitlyn Cao; Mandy Liu; Adam Dziulko; Ana Alcaina-Caro; Qianlan Xu; Dorota Skowronska-Krawczyk; Javier Lopez-Rios; Diane E. Dickel; Anaïs F. Bardet; Len A. Pennacchio; Axel Visel; Evgeny Z. Kvon
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Integrative analysis of the 3D genome and epigenome in mouse embryonic tissues
err2024-12-16
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errYu, Miao; Zemke, Nathan R.; Chen, Ziyin; Juric, Ivan; Hu, Rong; Raviram, Ramya; Abnousi, Armen; Fang, Rongxin; Zhang, Yanxiao; Gorkin, David U.; Li, Yang E.; Zhao, Yuan; Lee, Lindsay; Mishra, Shreya; Schmitt, Anthony D.; Qiu, Yunjiang; Dickel, Diane E.; Visel, Axel; Pennacchio, Len A.; Hu, Ming; Ren, Bing
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High incidence and geographic distribution of cleft palate in Finland are associated with the IRF6 gene
err2024-11-06
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errRahimov, Fedik; Nieminen, Pekka; Kumari, Priyanka; Juuri, Emma; Nikopensius, Tiit; Paraiso, Kitt; German, Jakob; Karvanen, Antti; Kals, Mart; Elnahas, Abdelrahman G.; Karjalainen, Juha; Kurki, Mitja; Palotie, Aarno; Heliovaara, Arja; Esko, Tonu; Jukarainen, Sakari; Palta, Priit; Ganna, Andrea; Patni, Anjali P.; Mar, Daniel; Bomsztyk, Karol; Mathieu, Julie; Ruohola-Baker, Hannele; Visel, Axel; Fakhouri, Walid D.; Schutte, Brian C.; Cornell, Robert A.; Rice, David P.
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VISTA Enhancer browser: an updated database of tissue-specific developmental enhancers
err2024-10-29
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errKosicki, Michael; Baltoumas, Fotis A.; Kelman, Guy; Boverhof, Joshua; Ong, Yeongshnn; Cook, Laura E.; Dickel, Diane E.; Pavlopoulos, Georgios A.; Pennacchio, Len A.; Visel, Axel
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A gene desert required for regulatory control of pleiotropic Shox2 expression and embryonic survival
err2024-10-10
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errAbassah-Oppong, Samuel; Zoia, Matteo; Mannion, Brandon J.; Rouco, Raquel; Tissieres, Virginie; Spurrell, Cailyn H.; Roland, Virginia; Darbellay, Fabrice; Itum, Anja; Gamart, Julie; Festa-Daroux, Tabitha A.; Sullivan, Carly S.; Kosicki, Michael; Rodriguez-Carballo, Eddie; Fukuda-Yuzawa, Yoko; Hunter, Riana D.; Novak, Catherine S.; Plajzer-Frick, Ingrid; Tran, Stella; Akiyama, Jennifer A.; Dickel, Diane E.; Lopez-Rios, Javier; Barozzi, Iros; Andrey, Guillaume; Visel, Axel; Pennacchio, Len A.; Cobb, John; Osterwalder, Marco
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Nr2f1 enhancers have distinct functions in controlling Nr2f1 expression during cortical development
err2024-09-23
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errLiu, Zhidong; Ypsilanti, Athena R.; Papadimitriou, Eirene Markenscoff-; Dickel, Diane E.; Sanders, Stephan J.; Dong, Shan; Pennacchio, Len A.; Visel, Axel; Rubenstein, John L.
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Pre-hypertrophic chondrogenic enhancer landscape of limb and axial skeleton development
err2024-06-06
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errDarbellay, Fabrice; Ramisch, Anna; Lopez-Delisle, Lucille; Kosicki, Michael; Rauseo, Antonella; Jouini, Zahra; Visel, Axel; Andrey, Guillaume
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A conserved molecular logic for neurogenesis to gliogenesis switch in the cerebral cortex
err2024-05-07
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errLiang, Xiaoyi G.; Hoang, Kendy; Meyerink, Brandon L.; Pratiksha, Kc; Paraiso, Kitt; Wang, Li; Jones, Ian R.; Zhang, Yue; Katzman, Sol; Finn, Thomas S.; Tsyporin, Jeremiah; Qu, Fangyuan; Chen, Zhaoxu; Visel, Axel; Kriegstein, Arnold; Shen, Yin; Pilaz, Louis - Jan; Chen, Bin
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Spatial co-transcriptomics reveals discrete stages of the arbuscular mycorrhizal symbiosis
err2024-04-08
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errSerrano, Karen; Bezrutczyk, Margaret; Goudeau, Danielle; Dao, Thai; O'Malley, Ronan; Malmstrom, Rex R.; Visel, Axel; Scheller, Henrik V.; Cole, Benjamin
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Increased enhancer-promoter interactions during developmental enhancer activation in mammals
err2024-03-20
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errChen, Zhuoxin; Snetkova, Valentina; Bower, Grace; Jacinto, Sandra; Clock, Benjamin; Dizehchi, Atrin; Barozzi, Iros; Mannion, Brandon J.; Alcaina-Caro, Ana; Lopez-Rios, Javier; Dickel, Diane E.; Visel, Axel; Pennacchio, Len A.; Kvon, Evgeny Z.
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Dynamic enhancer landscapes in human craniofacial development
err2024-03-06
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errRajderkar, Sudha Sunil; Paraiso, Kitt; Amaral, Maria Luisa; Kosicki, Michael; Cook, Laura E.; Darbellay, Fabrice; Spurrell, Cailyn H.; Osterwalder, Marco; Zhu, Yiwen; Wu, Han; Afzal, Sarah Yasmeen; Blow, Matthew J.; Kelman, Guy; Barozzi, Iros; Fukuda-Yuzawa, Yoko; Akiyama, Jennifer A.; Afzal, Veena; Tran, Stella; Plajzer-Frick, Ingrid; Novak, Catherine S.; Kato, Momoe; Hunter, Riana D.; von Maydell, Kianna; Wang, Allen; Lin, Lin; Preissl, Sebastian; Lisgo, Steven; Ren, Bing; Dickel, Diane E.; Pennacchio, Len A.; Visel, Axel
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Identification of conserved skeletal enhancers associated with craniosynostosis risk genes
err2023-10-26
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errHe, Xuan Anita; Berenson, Anna; Bernard, Michelle; Weber, Chris; Cook, Laura E.; Visel, Axel; Bass, Juan I. Fuxman; Fisher, Shannon
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Conserved enhancers control notochord expression of vertebrate Brachyury
err2023-10-18
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errKemmler, Cassie L.; Smolikova, Jana; Moran, Hannah R.; Mannion, Brandon J.; Knapp, Dunja; Lim, Fabian; Czarkwiani, Anna; Hermosilla Aguayo, Viviana; Rapp, Vincent; Fitch, Olivia E.; Boetschi, Seraina; Selleri, Licia; Farley, Emma; Braasch, Ingo; Yun, Maximina; Visel, Axel; Osterwalder, Marco; Mosimann, Christian; Kozmik, Zbynek; Burger, Alexa
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Induction of kidney-related gene programs through co-option of SALL1 in mole ovotestes
err2023-09-01
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errSchindler, Magdalena; Osterwalder, Marco; Harabula, Izabela; Wittler, Lars; Tzika, Athanasia C.; Dechmann, Dina K. N.; Vingron, Martin; Visel, Axel; Haas, Stefan A.; Real, Francisca M.
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A spatio-temporally constrained gene regulatory network directed by PBX1/2 acquires limb patterning specificity via HAND2
err2023-07-06
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errLosa, Marta; Barozzi, Iros; Osterwalder, Marco; Hermosilla-Aguayo, Viviana; Morabito, Angela; Chacon, Brandon H.; Zarrineh, Peyman; Girdziusaite, Ausra; Benazet, Jean Denis; Zhu, Jianjian; Mackem, Susan; Capellini, Terence D.; Dickel, Diane; Bobola, Nicoletta; Zuniga, Aimee; Visel, Axel; Zeller, Rolf; Selleri, Licia
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