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Philip Hugenholtz

the university of queensland

133H-index
875Paper Count
13.2WCitation Count
Published Papers 190
Publication Date
The planktonic microbiome of the Great Barrier Reef
errNature
IF48.5
err2026-07-22
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errOAAI
errSteven Robbins; Marko Terzin; Katherine Dougan; Julian Zaugg; Sara C. Bell; Patrick W. Laffy; J. Pamela Engelberts; Kim-Anh Lê Cao; Renee K. Gruber; Nicole S. Webster; David G. Bourne; Philip Hugenholtz; Yun Kit Yeoh
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Resolving the evolutionary duality of marine symbionts: redefining the genus Endozoicomonas and proposing Neoendozoicomonas gen. nov.
err2026-05-13
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errOAAI
errFlúvio Modolon; Alessandro N Garritano; Philip Hugenholtz; Christian R Voolstra; Tina Keller-Costa; Rodrigo Costa; Torsten Thomas; Raquel S Peixoto
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A molecular inventory of the faecal microbiomes of 23 marsupial species
err2026-01-01
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PREAI
errBowerman, Kate L.; Soo, Rochelle M.; Chaumeil, Pierre-Alain; Blyton, Michaela D. J.; Sorensen, Mette; Gunbilig, Disan; Malig, Maika; Islam, Moutusee; Zaugg, Julian; Wood, David L. A.; Liachko, Ivan; Auch, Benjamin; Morrison, Mark; Krause, Lutz; Moller, Birger Lindberg; Neilson, Elizabeth H. J.; Hugenholtz, Philip
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Structome-AlignViewer: On Confidence Assessment in Structure-Aware Alignments
err2026-01-01
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PREAI
errMalik, Ashar J.; Mao, Siying; Hugenholtz, Philip; Ascher, David B.
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Metagenomic analysis of fecal microbiomes reveals genetic potential for diverse hydrogen management strategies in marsupials
err2025-12-01
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PREAI
errBowerman, Kate L.; Lu, Yang; McRae, Harley; Volmer, James G.; Zaugg, Julian; Pope, Phillip B.; Hugenholtz, Philip; Greening, Chris; Morrison, Mark; Soo, Rochelle M.; Evans, Paul N.
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GTDB release 10: a complete and systematic taxonomy for 715 230 bacterial and 17 245 archaeal genomes
err2025-10-01
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PREAI
errParks, Donovan H.; Chaumeil, Pierre-Alain; Mussig, Aaron J.; Rinke, Christian; Chuvochina, Maria; Hugenholtz, Philip
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Exploring extreme environments in Türkiye for novel P450s through metagenomic analysis
err2025-09-08
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errOAAI
errMumcu, Hande; Zaugg, Julian; Keles, Irem; Kayrav, Aycan; Balci, Nurgul; Nelson, David R.; Hugenholtz, Philip; Gillam, Elizabeth M. J.; Karaguler, Nevin Gul
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Genome-resolved long-read sequencing expands known microbial diversity across terrestrial habitats
err2025-07-24
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errOAAI
errMantas Sereika; Aaron James Mussig; Chenjing Jiang; Kalinka Sand Knudsen; Thomas Bygh Nymann Jensen; Francesca Petriglieri; Yu Yang; Vibeke Rudkjøbing Jørgensen; Francesco Delogu; Emil Aarre Sørensen; Per Halkjær Nielsen; Caitlin Margaret Singleton; Philip Hugenholtz; Mads Albertsen
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A long-awaited taxogenomic investigation of the family Halomonadaceae (vol 14, 1293707, 2023)
err2025-01-28
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errOAAI
errde la Haba, Rafael R.; Arahal, David R.; Sanchez-Porro, Cristina; Chuvochina, Maria; Wittouck, Stijn; Hugenholtz, Philip; Ventosa, Antonio
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Microbial solutions must be deployed against climate catastrophe
err2025-01-21
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errOAAI
errPeixoto, Raquel; Voolstra, Christian R.; Stein, Lisa Y.; Hugenholtz, Philip; Falcao Salles, Joana; Amin, Shady A.; Haggblom, Max; Gregory, Ann; Makhalanyane, Thulani P.; Wang, Fengping; Agbodjato, Nadege Adouke; Wang, Yinzhao; Jiao, Nianzhi; Lennon, Jay T.; Ventosa, Antonio; Bavoil, Patrik M.; Miller, Virginia; Gilbert, Jack A.
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Metagenomics: a new frontier for routine pathology testing of gastrointestinal pathogens
err2025-01-18
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errOAAI
errAngel, Nicola Z.; Sullivan, Mitchell J.; Alsheikh-Hussain, Areej; Fang, Liang; Macdonald, Samantha; Pribyl, Alena; Wills, Blake; Tyson, Gene W.; Hugenholtz, Philip; Parks, Donovan H.; Griffin, Paul; Wood, David L. A.
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Isolation of a Methanobrevibacter gottschalkii strain from an Eastern Gray Kangaroo
err2024-12-18
err1
errOAAI
errVolmer, James G.; Evans, Paul N.; Soo, Rochelle M.; Hugenholtz, Philip; Tyson, Gene W.; Morrison, Mark
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Proposal of Patescibacterium danicum gen. nov., sp. nov. in the ubiquitous bacterial phylum Patescibacteriota phyl. nov.
err2024-11-19
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errOAAI
errDutkiewicz, Zuzanna; Singleton, Caitlin M.; Sereika, Mantas; Villada, Juan C.; Mussig, Aaron J.; Chuvochina, Maria; Albertsen, Mads; Schulz, Frederik; Woyke, Tanja; Nielsen, Per H.; Hugenholtz, Philip; Rinke, Christian
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Microbial solutions must be deployed against climate catastrophe
err2024-11-11
err0
errOAAI
errPeixoto, Raquel; Voolstra, Christian R.; Stein, Lisa Y.; Hugenholtz, Philip; Salles, Joana Falcao; Amin, Shady A.; Haggblom, Max; Gregory, Ann; Makhalanyane, Thulani P.; Wang, Fengping; Agbodjato, Nadege Adouke; Wang, Yinzhao; Jiao, Nianzhi; Lennon, Jay T.; Ventosa, Antonio; Bavoil, Patrik M.; Miller, Virginia; Gilbert, Jack A.
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Microbial solutions must be deployed against climate catastrophe
err2024-11-11
err0
errOAAI
errPeixoto, Raquel; Voolstra, Christian R.; Stein, Lisa Y.; Hugenholtz, Philip; Salles, Joana Falcao; Amin, Shady A.; Haggblom, Max; Gregory, Ann; Makhalanyane, Thulani P.; Wang, Fengping; Agbodjato, Nadege Adouke; Wang, Yinzhao; Jiao, Nianzhi; Lennon, Jay T.; Ventosa, Antonio; Bavoil, Patrik M.; Miller, Virginia; Gilbert, Jack A.
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Microbial solutions must be deployed against climate catastrophe
err2024-11-11
err0
errOAAI
errPeixoto, Raquel; Voolstra, Christian R.; Stein, Lisa Y.; Hugenholtz, Philip; Salles, Joana Falcao; Amin, Shady A.; Haeggblom, Max; Gregory, Ann; Makhalanyane, Thulani P.; Wang, Fengping; Agbodjato, Nadege Adouke; Wang, Yinzhao; Jiao, Nianzhi; Lennon, Jay T.; Ventosa, Antonio; Bavoil, Patrik M.; Miller, Virginia; Gilbert, Jack A.
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Microbial solutions must be deployed against climate catastrophe
err2024-11-11
err0
errOAAI
errPeixoto, Raquel; Voolstra, Christian R.; Stein, Lisa Y.; Hugenholtz, Philip; Salles, Joana Falcao; Amin, Shady A.; Haggblom, Max; Gregory, Ann; Makhalanyane, Thulani P.; Wang, Fengping; Agbodjato, Nadege Adouke; Wang, Yinzhao; Jiao, Nianzhi; Lennon, Jay T.; Ventosa, Antonio; Bavoil, Patrik M.; Miller, Virginia; Gilbert, Jack A.
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Microbial solutions must be deployed against climate catastrophe
err2024-11-11
err0
errOAAI
errPeixoto, Raquel; Voolstra, Christian R.; Stein, Lisa Y.; Hugenholtz, Philip; Salles, Joana Falcao; Amin, Shady A.; Haeggblom, Max; Gregory, Ann; Makhalanyane, Thulani P.; Wang, Fengping; Agbodjato, Nadege Adouke; Wang, Yinzhao; Jiao, Nianzhi; Lennon, Jay T.; Ventosa, Antonio; Bavoil, Patrik M.; Miller, Virginia; Gilbert, Jack A.
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Options and considerations for validation of prokaryotic names under the SeqCode
err2024-11-01
err0
errOAAI
errVenter, Stephanus N.; Rodriguez-R, Luis M.; Chuvochina, Maria; Palmer, Marike; Hugenholtz, Philip; Steenkamp, Emma T.
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Phylogenetic reconciliation: making the most of genomes to understand microbial ecology and evolution
err2024-07-13
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errOAAI
errWilliams, Tom A.; Davin, Adrian A.; Szantho, Lenard L.; Stamatakis, Alexandros; Wahl, Noah A.; Woodcroft, Ben J.; Soo, Rochelle M.; Eme, Laura; Sheridan, Paul O.; Gubry-Rangin, Cecile; Spang, Anja; Hugenholtz, Philip; Szollosi, Gergely J.
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