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Andrej Benjak

University of Bern

28H-index
132Paper Count
3.7KCitation Count
Published Papers 36
Publication Date
Hepatitis C Virus Can Induce Gene Expression Changes Associated with Hepatocarcinogenesis
err2026-05-29
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errTuyana Boldanova; Fredrik Trulsson; Fahim Ebrahimi; Andrej Benjak; Matthias S. Matter; Aleksei Suslov; Stefan Wieland; Charlotte K.Y. Ng; Markus H. Heim
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Multi-omics profiling reveals divergent biology and liver microenvironment in HCC of metastatic and de novo origin
err2026-03-06
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errGina F. Boot; Fabian Haak; Mairene Coto-Llerena; Tuyana Boldanova; Eva Dazert; Philip Sedlaczek; George Rosenberger; Cinzia Esposito; Caner Ercan; Stefan Wieland; Salvatore Lorenzo Renne; Andrej Benjak; Matthias S. Matter; Luca Di Tommaso; Michael N. Hall; Luigi M. Terracciano; Markus H. Heim; Salvatore Piscuoglio; Charlotte K. Y. Ng
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Predictive molecular alterations of prostate cancer brain metastases based on a companion diagnostic assay
err2025-11-27
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errAntonio Rodríguez-Calero; Andrej Benjak; Sina Maletti; Dilara Akhoundova Sanoyan; Martin Zoche; Marta Nowak; Holger Moch; Mark A. Rubin
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Loss of PI5P4Kα Slows the Progression of a Pten Mutant Basal Cell Model of Prostate Cancer
err2024-10-09
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errTriscott, Joanna; Lehner, Marika; Benjak, Andrej; Reist, Matthias; Emerling, Brooke M.; Ng, Charlotte K. Y.; de Brot, Simone; Rubin, Mark A.
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PipeIT2: A tumor-only somatic variant calling workflow for molecular diagnostic Ion Torrent sequencing data
err2023-03-01
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errSchnidrig, Desiree; Garofoli, Andrea; Benjak, Andrej; Ratsch, Gunnar; Rubin, Mark A.; Piscuoglio, Salvatore; Ng, Charlotte K. Y.
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DNA Methylation Landscapes of Prostate Cancer Brain Metastasis Are Shaped by Early Driver Genetic Alterations
err2023-02-07
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errGallon, John; Rodriguez-Calero, Antonio; Benjak, Andrej; Akhoundova, Dilara; Maletti, Sina; Amstutz, Ursula; Hewer, Ekkehard; Genitsch, Vera; Fleischmann, Achim; Rushing, Elisabeth J.; Grobholz, Rainer; Fischer, Ingeborg; Jochum, Wolfram; Cathomas, Gieri; Osunkoya, Adeboye O.; Bubendorf, Lukas; Moch, Holger; Thalmann, George; Feng, Felix Y.; Gillessen, Silke; Ng, Charlotte K. Y.; Rubin, Mark A.; Piscuoglio, Salvatore
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Siglec-7 represents a glyco-immune checkpoint for non-exhausted effector memory CD8+T cells with high functional and metabolic capacities
err2022-09-23
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errHaas, Quentin; Markov, Nikita; Muerner, Lukas; Rubino, Viviana; Benjak, Andrej; Haubitz, Monika; Baerlocher, Gabriela M.; Ng, Charlotte K. Y.; Munz, Christian; Riether, Carsten; Ochsenbein, Adrian F.; Simon, Hans-Uwe; von Gunten, Stephan
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A new paradigm for leprosy diagnosis based on host gene expression
err2021-10-25
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errLeal-Calvo, Thyago; Avanzi, Charlotte; Mendes, Mayara Abud; Benjak, Andrej; Busso, Philippe; Pinheiro, Roberta Olmo; Sarno, Euzenir Nunes; Cole, Stewart Thomas; Moraes, Milton Ozorio
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Patient-derived xenografts and organoids model therapy response in prostate cancer
err2021-02-18
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errKarkampouna, Sofia; La Manna, Federico; Benjak, Andrej; Kiener, Mirjam; De Menna, Marta; Zoni, Eugenio; Grosjean, Joel; Klima, Irena; Garofoli, Andrea; Bolis, Marco; Vallerga, Arianna; Theurillat, Jean-Philippe; De Filippo, Maria R.; Genitsch, Vera; Keller, David; Booij, Tijmen H.; Stirnimann, Christian U.; Eng, Kenneth; Sboner, Andrea; Ng, Charlotte K. Y.; Piscuoglio, Salvatore; Gray, Peter C.; Spahn, Martin; Rubin, Mark A.; Thalmann, George N.; Kruithof-de Julio, Marianna
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6,11-Dioxobenzo[f]pyrido[1,2-a]indoles Kill Mycobacterium tuberculosis by Targeting Iron-Sulfur Protein Rv0338c (IspQ), A Putative Redox Sensor
err2020-09-15
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errSzekely, Rita; Rengifo-Gonzalez, Monica; Singh, Vinayak; Riabova, Olga; Benjak, Andrej; Piton, Jeremie; Cimino, Mena; Kornobis, Etienne; Mizrahi, Valerie; Johnsson, Kai; Manina, Giulia; Makarov, Vadim; Cole, Stewart T.
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Emergence of Mycobacterium leprae Rifampin Resistance Evaluated by Whole-Genome Sequencing after 48 Years of Irregular Treatment
err2020-06-23
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errAvanzi, Charlotte; Maia, Raquel Cristina; Benjak, Andrej; Nery, Jose Augusto; Sales, Anna Maria; Miranda, Alice; Duppre, Nadia Cristina; Fontes, Amanda Nogueira Brum; da Silva, Tatiana Pereira; Pinheiro, Roberta Olmo; Neves-manta, Fernanda; Moreira, Suelen Justo Maria; Busso, Philippe; Sarno, Euzenir Nunes; Suffys, Phillip Noel; Cole, Stewart Thomas; Moraes, Milton Ozorio
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Genomic Characterization ofMycobacterium lepraeto Explore Transmission Patterns Identifies New Subtype in Bangladesh
err2020-06-16
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errTio-Coma, Maria; Avanzi, Charlotte; Verhard, Els M.; Pierneef, Louise; van Hooij, Anouk; Benjak, Andrej; Roy, Johan Chandra; Khatun, Marufa; Alam, Khorshed; Corstjens, Paul; Cole, Stewart T.; Richardus, Jan Hendrik; Geluk, Annemieke
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Population Genomics of Mycobacterium leprae Reveals a New Genotype in Madagascar and the Comoros
err2020-05-11
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errAvanzi, Charlotte; Lecorche, Emmanuel; Rakotomalala, Fetra Angelot; Benjak, Andrej; Rabenja, Fahafahantsoa Rapelanoro; Ramarozatovo, Lala S.; Cauchoix, Bertrand; Rakoto-Andrianarivelo, Mala; Tio-Coma, Maria; Leal-Calvo, Thyago; Busso, Philippe; Boy-Roettger, Stefanie; Chauffour, Aurelie; Rasamoelina, Tahinamandrato; Andrianarison, Aina; Sendrasoa, Fandresena; Spencer, John S.; Singh, Pushpendra; Dashatwar, Digambar Ramchandra; Narang, Rahul; Berland, Jean-Luc; Jarlier, Vincent; Salgado, Claudio G.; Moraes, Milton O.; Geluk, Annemieke; Randrianantoandro, Andriamira; Cambau, Emmanuelle; Cole, Stewart T.
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New 2-Ethylthio-4-methylaminoquinazoline derivatives inhibiting two subunits of cytochrome bc1 in Mycobacterium tuberculosis
err2020-01-23
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errLupien, Andreanne; Foo, Caroline Shi-Yan; Savina, Svetlana; Vocat, Anthony; Piton, Jeremie; Monakhova, Natalia; Benjak, Andrej; Lamprecht, Dirk A.; Steyn, Adrie J. C.; Pethe, Kevin; Makarov, Vadim A.; Cole, Stewart T.
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EspL is essential for virulence and stabilizes EspE, EspF and EspH levels in Mycobacterium tuberculosis
err2018-12-20
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errSala, Claudia; Odermatt, Nina T.; Soler-Arnedo, Paloma; Guelen, Muhammet F.; von Schultz, Sofia; Benjak, Andrej; Cole, Stewart T.
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Arylvinylpiperazine Amides, a New Class of Potent Inhibitors Targeting QcrB of Mycobacterium tuberculosis
errMBIO
IF4.7
err2018-11-07
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errFoo, Caroline S.; Lupien, Andreanne; Kienle, Maryline; Vocat, Anthony; Benjak, Andrej; Sommer, Raphael; Lamprecht, Dirk A.; Steyn, Adrie J. C.; Pethe, Kevin; Piton, Jeremie; Altmann, Karl-Heinz; Cole, Stewart T.
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Highly Reduced Genome of the New Species Mycobacterium uberis, the Causative Agent of Nodular Thelitis and Tuberculoid Scrotitis in Livestock and a Close Relative of the Leprosy Bacilli
errMSPHERE
IF3.1
err2018-10-31
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errBenjak, Andrej; Avanzi, Charlotte; Benito, Yvonne; Breysse, Franck; Chartier, Christophe; Boschiroli, Maria-Laura; Fourichon, Christine; Michelet, Lorraine; Pin, Didier; Flandrois, Jean-Pierre; Bruyere, Pierre; Dumitrescu, Oana; Cole, Stewart T.; Lina, Gerard
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Ancient genomes reveal a high diversity of Mycobacterium leprae in medieval Europe
err2018-05-10
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errSchuenemann, Verena J.; Avanzi, Charlotte; Krause-Kyora, Ben; Seitz, Alexander; Herbig, Alexander; Inskip, Sarah; Bonazzi, Marion; Reiter, Ella; Urban, Christian; Pedersen, Dorthe Dangvard; Taylor, G. Michael; Singh, Pushpendra; Stewart, Graham R.; Veleminsky, Petr; Likovsky, Jakub; Marcsik, Antonia; Molnar, Erika; Palfi, Gyorgy; Mariotti, Valentina; Riga, Alessandro; Belcastro, M. Giovanna; Boldsen, Jesper L.; Nebel, Almut; Mays, Simon; Donoghue, Helen D.; Zakrzewski, Sonia; Benjak, Andrej; Nieselt, Kay; Cole, Stewart T.; Krause, Johannes
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Phylogenomics and antimicrobial resistance of the leprosy bacillus Mycobacterium leprae
err2018-01-24
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errBenjak, Andrej; Avanzi, Charlotte; Singh, Pushpendra; Loiseau, Chloe; Girma, Selfu; Busso, Philippe; Brum Fontes, Amanda N.; Miyamoto, Yuji; Namisato, Masako; Bobosha, Kidist; Salgado, Claudio G.; da Silva, Moises B.; Bouth, Raquel C.; Frade, Marco A. C.; Bernardes Filho, Fred; Barreto, Josafa G.; Nery, Jose A. C.; Buehrer-Sekula, Samira; Lupien, Andreanne; Al-Samie, Abdul R.; Al-Qubati, Yasin; Alkubati, Abdul S.; Bretzel, Gisela; Vera-Cabrera, Lucio; Sakho, Fatoumata; Johnson, Christian R.; Kodio, Mamoudou; Fomba, Abdoulaye; Sow, Samba O.; Gado, Moussa; Konate, Ousmane; Stefani, Mariane M. A.; Penna, Gerson O.; Suffys, Philip N.; Sarno, Euzenir Nunes; Moraes, Milton O.; Rosa, Patricia S.; Dias Baptista, Ida M. F.; Spencer, John S.; Aseffa, Abraham; Matsuoka, Masanori; Kai, Masanori; Cole, Stewart T.
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