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R

Roderic Guigó

The Barcelona Institute of Science and Technology

126H-index
704Paper Count
12.6WCitation Count
Published Papers 171
Publication Date
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An encyclopedia of human enhancer–gene regulatory interactions
errNature
IF48.5
err2026-07-15
err0
errOAAI
errAndreas R. Gschwind; Kristy S. Mualim; Alireza Karbalayghareh; Maya U. Sheth; Kushal K. Dey; Evelyn Jagoda; Ramil N. Nurtdinov; Wang Xi; Anthony S. Tan; James Galante; Hank Jones; X. Rosa Ma; David Yao; Dulguun Amgalan; Judhajeet Ray; Chad J. Munger; Joseph Nasser; Žiga Avsec; Benjamin T. James; Muhammad S. Shamim; Neva C. Durand; Suhas S. P. Rao; Ragini Mahajan; Benjamin R. Doughty; Kalina Andreeva; Jacob C. Ulirsch; Kaili Fan; Elizabeth M. Perez; Tri C. Nguyen; David R. Kelley; Hilary K. Finucane; Jill E. Moore; Zhiping Weng; Manolis Kellis; Michael C. Bassik; Berk Ustun; Alkes L. Price; Michael A. Beer; Roderic Guigó; John A. Stamatoyannopoulos; Erez Lieberman Aiden; William J. Greenleaf; Christina S. Leslie; Lars M. Steinmetz; Anshul Kundaje; Jesse M. Engreitz
errShare
errSave
An expanded registry of candidate cis-regulatory elements
errNature
IF48.5
err2026-01-07
err0
errOAAI
errJill E. Moore; Henry E. Pratt; Kaili Fan; Nishigandha Phalke; Jonathan Fisher; Shaimae I. Elhajjajy; Gregory Andrews; Mingshi Gao; Nicole Shedd; Yu Fu; Matthew C. Lacadie; Jair Meza; Mansi Khandpekar; Mohit Ganna; Eva Choudhury; Ross Swofford; Huong Phan; Christian C. Ramirez; Maxwell Campbell; Mary Likhite; Nina P. Farrell; Annika K. Weimer; Anusri Pampari; Vivekanandan Ramalingam; Fairlie Reese; Beatrice Borsari; Xuezhu Yu; Eve Wattenberg; Marina Ruiz-Romero; Milad Razavi-Mohseni; Jinrui Xu; Timur Galeev; Andres Colubri; Michael A. Beer; Roderic Guigó; Mark B. Gerstein; Jesse M. Engreitz; Mats Ljungman; Timothy E. Reddy; Michael P. Snyder; Charles B. Epstein; Elizabeth Gaskell; Bradley E. Bernstein; Diane E. Dickel; Axel Visel; Len A. Pennacchio; Ali Mortazavi; Anshul Kundaje; Zhiping Weng
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Long-read transcriptomics of a diverse human cohort reveals ancestry bias in gene annotation
errNature Communications
IF15.7
err2025-12-03
err0
errOAAI
errPau Clavell-Revelles; Fairlie Reese; Sílvia Carbonell-Sala; Fabien Degalez; Carme Arnan; Winona Oliveros; Emilio Palumbo; Tamara Perteghella; Roderic Guigó; Marta Melé
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errSave
The Biodiversity Cell Atlas: mapping the tree of life at cellular resolution
errNature
IF48.5
err2025-09-24
err0
PREAI
errArnau Sebé-Pedrós; Amos Tanay; Mara K. N. Lawniczak; Detlev Arendt; Stein Aerts; John Archibald; Maria Ina Arnone; Mark Blaxter; Phillip Cleves; Susana M. Coelho; Mafalda Dias; Casey Dunn; Anamaria Elek; Jonathan Frazer; Toni Gabaldón; Jesse Gillis; Xavier Grau-Bové; Roderic Guigó; Oliver Hobert; Jaime Huerta-Cepas; Manuel Irimia; Allon Klein; Harris Lewin; Christopher J. Lowe; Heather Marlow; Jacob M. Musser; László G. Nagy; Sebastián R. Najle; Lior Pachter; Sadye Paez; Irene Papatheodorou; Michael J. Passalacqua; Nikolaus Rajewsky; Seung Y. Rhee; Thomas A. Richards; Tatjana Sauka-Spengler; Lauren M. Saunders; Eve Seuntjens; Jordi Solana; Yuyao Song; Ulrich Technau; Bo Wang
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errSave
Studying relative RNA localization from nucleus to the cytosol
errNAR GENOMICS AND BIOINFORMATICS
IF2.8
err2025-06-01
err0
PREAI
errNtasis, Vasilis F.; Guigo, Roderic
errShare
errSave
The BioGenome Portal: a web-based platform for biodiversity genomics data management
errgenomics proteomics bioinformatics
IF2.8
err2025-03-22
err0
errOAAI
errRighi, Emilio; Guigo, Roderic
errShare
errSave
Data sharing ethics toolkit: The Human Cell Atlas
errNATURE COMMUNICATIONS
IF15.7
err2024-11-20
err2
errOAAI
errKirby, Emily; Bernier, Alexander; Guigo, Roderic; Wold, Barbara; Arzuaga, Fabiana; Kusunose, Mayumi; Knoppers, Bartha M.
errShare
errSave
Long non-coding RNAs involved in Drosophila development and regeneration
errgenomics proteomics bioinformatics
IF2.8
err2024-08-16
err5
errOAAI
errCamilleri-Robles, Carlos; Amador, Raziel; Tiebe, Marcel; Teleman, Aurelio A.; Serras, Florenci; Guigo, Roderic; Corominas, Montserrat
errShare
errSave
The Catalan initiative for the Earth BioGenome Project: contributing local data to global biodiversity genomics
errgenomics proteomics bioinformatics
IF2.8
err2024-07-17
err3
errOAAI
errCorominas, Montserrat; Marques-Bonet, Tomas; Arnedo, Miquel A.; Bayes, Monica; Belmonte, Jordina; Escriva, Hector; Fernandez, Rosa; Gabaldon, Toni; Garnatje, Teresa; Germain, Josep; Niell, Manel; Palero, Ferran; Pons, Joan; Puigdomenech, Pere; Arroyo, Vanesa; Cuevas-Caballe, Cristian; Obiol, Joan Ferrer; Gut, Ivo; Gut, Marta; Hidalgo, Oriane; Izquierdo-Aranega, Guillem; Perez-Sorribes, Laia; Righi, Emilio; Riutort, Marta; Valles, Joan; Rozas, Julio; Alioto, Tyler; Guigo, Roderic
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errSave
CapTrap-seq: a platform-agnostic and quantitative approach for high-fidelity full-length RNA sequencing
errNATURE COMMUNICATIONS
IF15.7
err2024-06-27
err1
errOAAI
errCarbonell-Sala, Silvia; Perteghella, Tamara; Lagarde, Julien; Nishiyori, Hiromi; Palumbo, Emilio; Arnan, Carme; Takahashi, Hazuki; Carninci, Piero; Uszczynska-Ratajczak, Barbara; Guigo, Roderic
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errSave
Systematic assessment of long-read RNA-seq methods for transcript identification and quantification
errNATURE METHODS
IF32.1
err2024-06-07
err15
errOAAI
errPardo-Palacios, Francisco J.; Wang, Dingjie; Reese, Fairlie; Diekhans, Mark; Carbonell-Sala, Silvia; Williams, Brian; Loveland, Jane E.; De Maria, Maite; Adams, Matthew S.; Balderrama-Gutierrez, Gabriela; Behera, Amit K.; Gonzalez Martinez, Jose M.; Hunt, Toby; Lagarde, Julien; Liang, Cindy E.; Li, Haoran; Meade, Marcus Jerryd; Moraga Amador, David A.; Prjibelski, Andrey D.; Birol, Inanc; Bostan, Hamed; Brooks, Ashley M.; Celik, Muhammed Hasan; Chen, Ying; Du, Mei R. M.; Felton, Colette; Goeke, Jonathan; Hafezqorani, Saber; Herwig, Ralf; Kawaji, Hideya; Lee, Joseph; Li, Jian-Liang; Lienhard, Matthias; Mikheenko, Alla; Mulligan, Dennis; Nip, Ka Ming; Pertea, Mihaela; Ritchie, Matthew E.; Sim, Andre D.; Tang, Alison D.; Wan, Yuk Kei; Wang, Changqing; Wong, Brandon Y.; Yang, Chen; Barnes, If; Berry, Andrew E.; Capella-Gutierrez, Salvador; Cousineau, Alyssa; Dhillon, Namrita; Fernandez-Gonzalez, Jose M.; Ferrandez-Peral, Luis; Garcia-Reyero, Natalia; Goetz, Stefan; Hernandez-Ferrer, Carles; Kondratova, Liudmyla; Liu, Tianyuan; Martinez-Martin, Alessandra; Menor, Carlos; Mestre-Tomas, Jorge; Mudge, Jonathan M.; Panayotova, Nedka G.; Paniagua, Alejandro; Repchevsky, Dmitry; Ren, Xingjie; Rouchka, Eric; Saint-John, Brandon; Sapena, Enrique; Sheynkman, Leon; Smith, Melissa Laird; Suner, Marie-Marthe; Takahashi, Hazuki; Youngworth, Ingrid A.; Carninci, Piero; Denslow, Nancy D.; Guigo, Roderic; Hunter, Margaret E.; Maehr, Rene; Shen, Yin; Tilgner, Hagen U.; Wold, Barbara J.; Vollmers, Christopher; Frankish, Adam; Au, Kin Fai; Sheynkman, Gloria M.; Mortazavi, Ali; Conesa, Ana; Brooks, Angela N.
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errSave
An Insertion Within SIRPβ1 Shows a Dual Effect Over Alzheimer's Disease Cognitive Decline Altering the Microglial Response
errJOURNAL OF ALZHEIMERS DISEASE
IF3.1
err2024-03-19
err1
PREAI
errGarcia-Alberca, Jose Maria; de Rojas, Itziar; Sanchez-Mejias, Elisabeth; Garrido-Martin, Diego; Gonzalez-Palma, Laura; Jimenez, Sebastian; Pino-Angeles, Almudena; Cruz-Gamero, Jose Manuel; Mendoza, Silvia; Alarcon-Martin, Emilio; Munoz-Castro, Clara; Miguel Real, Luis; Jesus Tenao, Juan; Polvillo, Rocio; Govantes, Fernando; Lopez, Aroa; Royo-Aguado, Jose Luis; Navarro, Victoria; Gonzalez, Irene; Ruiz, Maximiliano; Reyes-Engel, Armando; Gris, Esther; Jose Bravo, Maria; Lopez-Gutierrez, Lidia; Mejias-Ortega, Marina; De la Guia, Paz; Lopez de la Rica, Maria; Ocejo, Olga; Torrecilla, Javier; Zafra, Carmen; Dolores Nieto, Maria; Urbano, Concepcion; Jimenez-Sanchez, Rocio; Pareja, Nuria; Luque, Macarena; Garcia-Peralta, Maria; Carrillejo, Rosario; del Carmen Furniet, Maria; Rueda, Lourdes; Sanchez-Fernandez, Ana; Mancilla, Tomas; Pena, Isabel; Garcia-Casares, Natalia; Moreno-Grau, Sonia; Hernandez, Isabel; Montrreal, Laura; Quintela, Ines; Gonzalez-Perez, Antonio; Calero, Miguel; Franco-Macias, Emilio; Macias, Juan; Menendez-Gonzalez, Manuel; Frank-Garcia, Ana; Huerto Vilas, Raquel; Diez-Fairen, Monica; Lage, Carmen; Garcia-Madrona, Sebastian; Garcia-Gonzalez, Pablo; Valero, Sergi; Sotolongo-Grau, Oscar; Perez-Cordon, Alba; Rabano, Alberto; Arias Pastor, Alfonso; Belen Pastor, Ana; Espinosa, Ana; Corma-Gomezn, Anais; Martin Montes, Angel; Sanabria, Angela; Martinez Rodriguez, Carmen; Buiza-Rueda, Dolores; Rodriguez-Rodriguez, Eloy; Ortega, Gemma; Alvarez, Ignacio; Rosas Allende, Irene; Pineda, Juan A.; Rosende-Roca, Maitee; Sanchez-Arjona, Maria Bernal; Fernandez-Fuertes, Marta; Alegret, Montserrat; Roberto, Natalia; del Ser, Teodoro; Garcia-Ribas, Guillermo; Sanchez-Juan, Pascual; Pastor, Pau; Pinol-Ripoll, Gerard; Jose Bullido, Maria; Alvarez, Victoria; Mir, Pablo; Medina, Miguel; Marquie, Marta; Eugenia Saez, Maria; Carracedo, Angel; Laplana, Marina; Tomas-Gallardo, Laura; Orellana, Adelina; Tarraga, Lluis; Boada, Merce; Fibla Palazon, Joan; Vitorica, Javier; Ruiz, Agustin; Guigo, Roderic; Gutierrez, Antonia; Luis Royo, Jose
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Integration of transcription regulation and functional genomic data reveals lncRNA SNHG6's role in hematopoietic differentiation and leukemia
errJOURNAL OF BIOMEDICAL SCIENCE
IF12.1
err2024-02-28
err1
errOAAI
errHazan, Joshua M.; Amador, Raziel; Ali-Nasser, Tahleel; Lahav, Tamar; Shotan, Stav Roni; Steinberg, Miryam; Cohen, Ziv; Aran, Dvir; Meiri, David; Assaraf, Yehuda G.; Guigo, Roderic; Bester, Assaf C.
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errSave
A fast non-parametric test of association for multiple traits
errGENOME BIOLOGY
IF9.4
err2023-10-12
err1
errOAAI
errGarrido-Martin, Diego; Calvo, Miquel; Reverter, Ferran; Guigo, Roderic
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errSave
The hologenome of Daphnia magna reveals possible DNA methylation and microbiome-mediated evolution of the host genome
errNUCLEIC ACIDS RESEARCH
IF13.1
err2023-08-28
err4
errOAAI
errChaturvedi, Anurag; Li, Xiaojing; Dhandapani, Vignesh; Marshall, Hollie; Kissane, Stephen; Cuenca-Cambronero, Maria; Asole, Giovanni; Calvet, Ferriol; Ruiz-Romero, Marina; Marangio, Paolo; Guigo, Roderic; Rago, Daria; Mirbahai, Leda; Eastwood, Niamh; Colbourne, John K.; Zhou, Jiarui; Mallon, Eamonn; Orsini, Luisa
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errSave
Genome annotation : From human genetics to biodiversity genomics
errCELL GENOMICS
IF9
err2023-08-01
err6
errOAAI
errGuigo, Roderic
errShare
errSave
Putting hornets on the genomic map
errSCIENTIFIC REPORTS
IF3.9
err2023-04-21
err4
errOAAI
errFavreau, Emeline; Cini, Alessandro; Taylor, Daisy; Ferreira, Francisco Camara; Bentley, Michael A.; Cappa, Federico; Cervo, Rita; Privman, Eyal; Schneider, Jadesada; Thiery, Denis; Mashoodh, Rahia; Wyatt, Christopher D. R.; Brown, Robert L.; Bodrug-Schepers, Alexandrina; Stralis-Pavese, Nancy; Dohm, Juliane C.; Mead, Daniel; Himmelbauer, Heinz; Guigo, Roderic; Sumner, Seirian
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errSave
Functional Evolution of Clustered Aquaporin Genes Reveals Insights into the Oceanic Success of Teleost Eggs
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2023-03-22
err5
errOAAI
errFerre, Alba; Chauvigne, Francois; Vlasova, Anna; Norberg, Birgitta; Bargelloni, Luca; Guigo, Roderic; Finn, Roderick Nigel; Cerda, Joan
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errSave
Hnf1α (MODY3) Controls Tissue-Specific Transcriptional Programs and Exerts Opposed Effects on Cell Growth in Pancreatic Islets and Liver
errMOLECULAR AND CELLULAR BIOLOGY
IF2.7
err2023-03-21
err124
errOAAI
errServitja, Joan-Marc; Pignatelli, Miguel; Angel Maestro, Miguel; Cardalda, Carina; Boj, Sylvia F.; Lozano, Juanjo; Blanco, Enrique; Lafuente, Amalia; McCarthy, Mark I.; Sumoy, Lauro; Guigo, Roderic; Ferrer, Jorge
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The landscape of expression and alternative splicing variation across human traits
errCELL GENOMICS
IF9
err2023-01-01
err14
errOAAI
errGarcia-Perez, Raquel; Ramirez, Jose Miguel; Ripoll-Cladellas, Aida; Chazarra-Gil, Ruben; Oliveros, Winona; Soldatkina, Oleksandra; Bosio, Mattia; Rognon, Paul Joris; Capella-Gutierrez, Salvador; Calvo, Miquel; Reverter, Ferran; Guigo, Roderic; Aguet, Francois; Ferreira, Pedro G.; Ardlie, Kristin G.; Mele, Marta
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Research Directions

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