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Barbara E. Engelhardt

gladstone institutes

47H-index
228Paper Count
2.3WCitation Count
Published Papers 35
Publication Date
Machine learning and statistical methods for molecular quantitative trait loci
err2026-09-25
err0
PREAI
errBarbara E. Engelhardt; Joshua S. Weinstock; Sarah K. Nyquist; Alexis Battle
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Understanding tumor-immune-stromal dynamics driving response and resistance to immune checkpoint blockade in melanoma
err2025-11-01
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PREAI
errTarantino, Giuseppe; He, Yiwen; Solanky, Priyanka; Cui, Xinyu; Pfaff, Kathleen; Thorner, Aaron R.; Blosser, Timothy; Boblitt, Elliot; Frangieh, Allison; Aprati, Tyler; Zhang, Boyang; Chen, Jiajia; Faulkner, Hannah Mae; Lawless, Aleigha; Manos, Michael; Helvie, Karla; Sharova, Tatyana; Frederick, Dennie; Krishna, Sachi; Mangum, Chanell; Abbondanza, Domenic; Mccann, Cai; Johnson, Bruce; Shalek, Alex K.; Van Allen, Eliezer; Zhuang, Xiaowei; Sullivan, Ryan; Engelhardt, Barbara; Farhi, Sami; Rodig, Scott; Hodi, F. Stephen; Boland, Genevieve M.; Liu, David
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Genomic characterization of normal and aberrant human milk production
err2025-09-10
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errOAAI
errYarden Golan; Sarah K. Nyquist; Zhe Liu; Dena Ennis; Jingjing Zhao; Emily Blair; Abdur Rahim Khan; Mary Prahl; Stephanie L. Gaw; Moran Yassour; Barbara E. Engelhardt; Valerie J. Flaherman; Nadav Ahituv
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Integrated ‘omics analysis reveals human milk oligosaccharide biosynthesis programs in human lactocytes
err2025-08-05
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errOAAI
errSarah Kate Nyquist; Laasya Devi Annepureddy; Kristija Sejane; Annalee Furst; G. Devon Trahan; Michael C. Rudolph; Alecia-Jane Twigger; Lars Bode; Barbara E. Engelhardt; Jayne F. Martin Carli; Britt Anne Goods
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Optimizing the design of spatial genomic studies
err2024-06-11
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errOAAI
errJones, Andrew; Cai, Diana; Li, Didong; Engelhardt, Barbara E.
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Alignment of spatial genomics data using deep Gaussian processes
err2023-08-17
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errOAAI
errJones, Andrew; Townes, F. William; Li, Didong; Engelhardt, Barbara E.
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Parts-based decomposition of spatial genomics data finds distinct tissue regions
err2023-01-07
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errOAAI
errTownes, F. William; Engelhardt, Barbara E.
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Nonnegative spatial factorization applied to spatial genomics
err2022-12-31
err25
errOAAI
errTownes, F. William; Engelhardt, Barbara E. E.
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Telescoping bimodal latent Dirichlet allocation to identify expression QTLs across tissues
err2022-08-17
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errOAAI
errGewirtz, Ariel D. H.; Townes, William F.; Engelhardt, Barbara E.
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Towards 'end-to-end' analysis and understanding of biological timecourse data
err2022-06-17
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errOAAI
errJena, Siddhartha G.; Goglia, Alexander G.; Engelhardt, Barbara E.
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Guiding Efficient, Effective, and Patient-Oriented Electrolyte Replacement in Critical Care: An Artificial Intelligence Reinforcement Learning Approach
err2022-04-20
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errOAAI
errPrasad, Niranjani; Mandyam, Aishwarya; Chivers, Corey; Draugelis, Michael; Hanson, C. William, III; Engelhardt, Barbara E.; Laudanski, Krzysztof
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A self-exciting point process to study multicellular spatial signaling patterns
err2021-08-06
err5
errOAAI
errVerma, Archit; Jena, Siddhartha G.; Isakov, Danielle R.; Aoki, Kazuhiro; Toettcher, Jared E.; Engelhardt, Barbara E.
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Joint analysis of expression levels and histological images identifies genes associated with tissue morphology
err2021-03-11
err48
errOAAI
errAsh, Jordan T.; Darnell, Gregory; Munro, Daniel; Engelhardt, Barbara E.
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Optimal marker gene selection for cell type discrimination in single cell analyses
err2021-02-19
err37
errOAAI
errDumitrascu, Bianca; Villar, Soledad; Mixon, Dustin G.; Engelhardt, Barbara E.
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Causal network inference from gene transcriptional time-series response to glucocorticoids
err2021-01-29
err21
errOAAI
errLu, Jonathan; Dumitrascu, Bianca; McDowell, Ian C.; Jo, Brian; Barrera, Alejandro; Hong, Linda K.; Leichter, Sarah M.; Reddy, Timothy E.; Engelhardt, Barbara E.
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Sparse multi-output Gaussian processes for online medical time series prediction
err2020-07-08
err26
errOAAI
errCheng, Li-Fang; Dumitrascu, Bianca; Darnell, Gregory; Chivers, Corey; Draugelis, Michael; Li, Kai; Engelhardt, Barbara E.
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Measuring the predictability of life outcomes with a scientific mass collaboration
err2020-03-30
err157
errOAAI
errSalganik, Matthew J.; Lundberg, Ian; Kindel, Alexander T.; Ahearn, Caitlin E.; Al-Ghoneim, Khaled; Almaatouq, Abdullah; Altschul, Drew M.; Brand, Jennie E.; Carnegie, Nicole Bohme; Compton, Ryan James; Datta, Debanjan; Davidson, Thomas; Filippova, Anna; Gilroy, Connor; Goode, Brian J.; Jahani, Eaman; Kashyap, Ridhi; Kirchner, Antje; McKay, Stephen; Morgan, Allison C.; Pentland, Alex; Polimis, Kivan; Raes, Louis; Rigobon, Daniel E.; Roberts, Claudia V.; Stanescu, Diana M.; Suhara, Yoshihiko; Usmania, Adaner; Wang, Erik H.; Adem, Muna; Alhajri, Abdulla; AlShebli, Bedoor; Amin, Redwane; Amos, Ryan B.; Argyle, Lisa P.; Baer-Bositis, Livia; Buechi, Moritz; Chung, Bo-Ryehn; Eggert, William; Faletto, Gregory; Fan, Zhilin; Freese, Jeremy; Gadgil, Tejomay; Gagne, Josh; Gao, Yue; Halpern-Manners, Andrew; Hashim, Sonia P.; Hausen, Sonia; He, Guanhua; Higuera, Kimberly; Hogan, Bernie; Horwitz, Ilana M.; Hummel, Lisa M.; Jain, Naman; Jin, Kun; Jurgens, David; Kaminski, Patrick; Karapetyan, Areg; Kim, E. H.; Leizman, Ben; Liu, Naijia; Moeser, Malte; Mack, Andrew E.; Mahajan, Mayank; Mandell, Noah; Marahrens, Helge; Mercado-Garcia, Diana; Mocz, Viola; Mueller-Gastell, Katariina; Musse, Ahmed; Niu, Qiankun; Nowak, William; Omidvar, Hamidreza; Or, Andrew; Ouyang, Karen; Pinto, Katy M.; Porter, Ethan; Porter, Kristin E.; Qian, Crystal; Rauf, Tamkinat; Sargsyan, Anahit; Schaffner, Thomas; Schnabel, Landon; Schonfeld, Bryan; Sender, Ben; Tang, Jonathan D.; Tsurkov, Emma; van Loon, Austin; Varol, Onur; Wang, Xiafei; Wang, Zhi; Wang, Julia; Wang, Flora; Weissman, Samantha; Whitaker, Kirstie; Wolters, Maria K.; Woo, Wei Lee; Wu, James; Wu, Catherine; Yang, Kengran; Yin, Jingwen; Zhao, Bingyu; Zhu, Chenyun; Brooks-Gunn, Jeanne; Engelhardt, Barbara E.; Hardt, Moritz; Knox, Dean; Levy, Karen; Narayanan, Arvind; Stewart, Brandon M.; Watta, Duncan J.; McLanahan, Sara
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netNMF-sc: leveraging gene-gene interactions for imputation and dimensionality reduction in single-cell expression analysis
err2020-01-28
err58
errOAAI
errElyanow, Rebecca; Dumitrascu, Bianca; Engelhardt, Barbara E.; Raphael, Benjamin J.
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SEX DIFFERENCES AT THE MOLECULAR LEVEL: LESSONS FROM THE HUMAN TRANSCRIPTOME
err2019-01-01
err0
PREAI
errStranger, Barbara; Oliva, Meritxell; Gamazon, Eric; Reverter, Ferran; Wucher, Valentin; Balliu, Brunilda; Dumitrascu, Bianca; Parsana, Princy; Payne, Anthony; Jo, Brian; Montgomery, Stephen; Battle, Alexis; Ardlie, Kristin; Guigo, Roderic; Engelhardt, Barbara
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